메뉴 건너뛰기




Volumn 195, Issue 17, 2013, Pages 3979-3986

Detection and characterization of miniature inverted-repeat transposable elements in "Candidatus Liberibacter asiaticus"

Author keywords

[No Author keywords available]

Indexed keywords

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GENOME; BACTERIUM DETECTION; BACTERIUM ISOLATE; CANDIDATUS LIBERIBACTER ASIATICUS; CHINA; DNA POLYMORPHISM; GENE FUNCTION; GENE IDENTIFICATION; GENE INSERTION; INVERTED REPEAT; MINIATURE INVERTED REPEAT TRANSPOSABLE ELEMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROPHAGE; TANDEM REPEAT; TRANSPOSON; UNITED STATES;

EID: 84883521490     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00413-13     Document Type: Article
Times cited : (19)

References (41)
  • 1
    • 84856264333 scopus 로고    scopus 로고
    • Impact of small repeat sequences on bacterial genome evolution
    • Delihas N. 2011. Impact of small repeat sequences on bacterial genome evolution. Genome Biol. Evol. 3:959-973.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 959-973
    • Delihas, N.1
  • 2
    • 0002331669 scopus 로고    scopus 로고
    • Miniature inverted-repeat transposable elements and their relationship to established DNA transposons
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), American Society for Microbiology, Washington, DC
    • Feschotte C, Zhang X, Wessler SR. 2002. Miniature inverted-repeat transposable elements and their relationship to established DNA transposons. In Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), Mobile DNA II. American Society for Microbiology, Washington, DC.
    • (2002) Mobile DNA II
    • Feschotte, C.1    Zhang, X.2    Wessler, S.R.3
  • 4
    • 0024266651 scopus 로고
    • A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae
    • Correia FF, Inouye S, Inouye M. 1988. A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae. J. Biol. Chem. 263:12194-12198.
    • (1988) J. Biol. Chem. , vol.263 , pp. 12194-12198
    • Correia, F.F.1    Inouye, S.2    Inouye, M.3
  • 5
    • 80053919660 scopus 로고    scopus 로고
    • Miniature transposable sequences are frequently mobilized in the bacterial plant pathogen Pseudomonas syringae pv. phaseolocola
    • doi:10.1371/journal.pone.0025773
    • Bardaji L, Añorga M, Jackson RW, Martínez-Bilbao A, Yanguas-Casás N. 2011. Miniature transposable sequences are frequently mobilized in the bacterial plant pathogen Pseudomonas syringae pv. phaseolocola. PLoS One 6:e25773. doi:10.1371/journal.pone.0025773.
    • (2011) PLoS One , vol.6
    • Bardaji, L.1    Añorga, M.2    Jackson, R.W.3    Martínez-Bilbao, A.4    Yanguas-Casás, N.5
  • 6
    • 37749047898 scopus 로고    scopus 로고
    • Enterobacterial small mobile sequences carry open reading frames and are found intragenically-evolutionary implications for formation of new peptides
    • Delihas N. 2007. Enterobacterial small mobile sequences carry open reading frames and are found intragenically-evolutionary implications for formation of new peptides. Gene Regul. Syst. Biol. 1:191-205.
    • (2007) Gene Regul. Syst. Biol. , vol.1 , pp. 191-205
    • Delihas, N.1
  • 7
    • 0025761156 scopus 로고
    • ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria
    • Hulton CS, Higgins CF, Sharp PM. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:825-834.
    • (1991) Mol. Microbiol. , vol.5 , pp. 825-834
    • Hulton, C.S.1    Higgins, C.F.2    Sharp, P.M.3
  • 8
    • 79551690292 scopus 로고    scopus 로고
    • Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators
    • Lin S, Hass S, Zemojtel T, Xiao P, Vingron M, Li R. 2011. Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators. Gene 473:139-149.
    • (2011) Gene , vol.473 , pp. 139-149
    • Lin, S.1    Hass, S.2    Zemojtel, T.3    Xiao, P.4    Vingron, M.5    Li, R.6
  • 9
    • 0035980680 scopus 로고    scopus 로고
    • Whole-genome organization and functional properties of miniature DNA insertion sequences conserved in pathogenic Neisseriae
    • Mazzone M, De Gregorio E, Lavitola A, Paqliarulo C, Alifano P, Di Nocera PP. 2001. Whole-genome organization and functional properties of miniature DNA insertion sequences conserved in pathogenic Neisseriae. Gene 278:211-222.
    • (2001) Gene , vol.278 , pp. 211-222
    • Mazzone, M.1    De Gregorio, E.2    Lavitola, A.3    Paqliarulo, C.4    Alifano, P.5    Di Nocera, P.P.6
  • 10
    • 84864020007 scopus 로고    scopus 로고
    • Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population
    • Nelson WC, Bhaya D, Heidelberg JF. 2012. Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population. J. Bacteriol. 194:3636-3642.
    • (2012) J. Bacteriol. , vol.194 , pp. 3636-3642
    • Nelson, W.C.1    Bhaya, D.2    Heidelberg, J.F.3
  • 12
    • 0032824652 scopus 로고    scopus 로고
    • Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae
    • Oggioni MR, Claverys JP. 1999. Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae. Microbiology 145:2647-2653.
    • (1999) Microbiology , vol.145 , pp. 2647-2653
    • Oggioni, M.R.1    Claverys, J.P.2
  • 14
    • 36849025572 scopus 로고    scopus 로고
    • Nezha, a novel active miniature invertedrepeat transposable element in cyanobacteria
    • Zhou F, Tran T, Xu Y. 2008. Nezha, a novel active miniature invertedrepeat transposable element in cyanobacteria. Biochem. Biophys. Res. Commun. 365:790-794.
    • (2008) Biochem. Biophys. Res. Commun. , vol.365 , pp. 790-794
    • Zhou, F.1    Tran, T.2    Xu, Y.3
  • 15
    • 33645686073 scopus 로고    scopus 로고
    • Huanglongbing: a destructive, newly-emerging, centuryold disease of citrus
    • Bové JM. 2006. Huanglongbing: a destructive, newly-emerging, centuryold disease of citrus. J. Plant Pathol. 88:7-37.
    • (2006) J. Plant Pathol. , vol.88 , pp. 7-37
    • Bové, J.M.1
  • 16
    • 42149118095 scopus 로고
    • Observations on yellow shoot of citrus
    • Lin KH. 1956. Observations on yellow shoot of citrus. Acta Phytopathol. Sin. 2:1-11.
    • (1956) Acta Phytopathol. Sin. , vol.2 , pp. 1-11
    • Lin, K.H.1
  • 17
    • 41049095047 scopus 로고    scopus 로고
    • The studies on detection of citrus Huanglongbing pathogen by polymerase chain reaction
    • Deng X, Tang W. 1996. The studies on detection of citrus Huanglongbing pathogen by polymerase chain reaction. J. South China Agric. Univ. 17:119-120.
    • (1996) J. South China Agric. Univ. , vol.17 , pp. 119-120
    • Deng, X.1    Tang, W.2
  • 18
    • 77953203159 scopus 로고    scopus 로고
    • Detection and quantitation of citrus Huanglongbing pathogen by polymerase chain reaction
    • Tian Y, Ke S, Ke C. 1996. Detection and quantitation of citrus Huanglongbing pathogen by polymerase chain reaction. Acta Phytopathol. Sin. 26:243-250.
    • (1996) Acta Phytopathol. Sin. , vol.26 , pp. 243-250
    • Tian, Y.1    Ke, S.2    Ke, C.3
  • 24
    • 80052801990 scopus 로고    scopus 로고
    • Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats
    • Zhou L, Powell CA, Hoffman MT, Fan G, Liu B, Lin H, Duan Y. 2011. Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats. Appl. Environ. Microbiol. 77:6663-6673.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 6663-6673
    • Zhou, L.1    Powell, C.A.2    Hoffman, M.T.3    Fan, G.4    Liu, B.5    Lin, H.6    Duan, Y.7
  • 26
    • 77953178850 scopus 로고    scopus 로고
    • Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats
    • Chen J, Deng X, Sun X, Jones D, Irey M, Civerolo E. 2010. Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats. Phytopathology 100:567-572.
    • (2010) Phytopathology , vol.100 , pp. 567-572
    • Chen, J.1    Deng, X.2    Sun, X.3    Jones, D.4    Irey, M.5    Civerolo, E.6
  • 27
    • 79955420678 scopus 로고    scopus 로고
    • Analysis of a prophage gene frequency revealed population variation of 'Candidatus Liberibacter asiaticus' from two citrus-growing provinces in China
    • Liu R, Zhang P, Pu X, Xing X, Chen J, Deng X. 2011. Analysis of a prophage gene frequency revealed population variation of 'Candidatus Liberibacter asiaticus' from two citrus-growing provinces in China. Plant Dis. 95:431-435.
    • (2011) Plant Dis. , vol.95 , pp. 431-435
    • Liu, R.1    Zhang, P.2    Pu, X.3    Xing, X.4    Chen, J.5    Deng, X.6
  • 29
    • 84863287200 scopus 로고    scopus 로고
    • Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus.'
    • doi:10.1186/1471-2180-12-18
    • Wang X, Zhou C, Deng X, Su H, Chen J. 2012. Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus.' BMC Microbiol. 12:18. doi:10.1186/1471-2180-12-18.
    • (2012) BMC Microbiol. , vol.12 , pp. 18
    • Wang, X.1    Zhou, C.2    Deng, X.3    Su, H.4    Chen, J.5
  • 30
    • 0028306461 scopus 로고
    • The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria
    • Jagoueix S, Bové JM, Garnier M. 1994. The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria. Int. J. Syst. Bacteriol. 44:379-386.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 379-386
    • Jagoueix, S.1    Bové, J.M.2    Garnier, M.3
  • 31
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG, Thompson WF. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 32
    • 0033990048 scopus 로고    scopus 로고
    • Primer 3 on theWWWfor general users and for biological programmers
    • Rozen S, Skaletsky HJ. 2000. Primer 3 on theWWWfor general users and for biological programmers. Methods Mol. Biol. 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 33
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 35
    • 23144452801 scopus 로고    scopus 로고
    • GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
    • doi:10.1093/nar/gki487
    • Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:W451-W454. doi:10.1093/nar/gki487.
    • (2005) Nucleic Acids Res. , vol.33
    • Besemer, J.1    Borodovsky, M.2
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 2542625925 scopus 로고    scopus 로고
    • The helixturn- helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding
    • Rousseau P, Gueguen E, Duval-Valentin Chandler M. 2004. The helixturn- helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding. Nucleic Acids Res. 32:1335-1344.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1335-1344
    • Rousseau, P.1    Gueguen, E.2    Duval-Valentin Chandler, M.3
  • 41
    • 0020504897 scopus 로고
    • Tn10 transposase acts preferentially on nearby transposon ends in vivo
    • Morisato D, Way JC, Kim HJ, Kleckner N. 1983. Tn10 transposase acts preferentially on nearby transposon ends in vivo. Cell 32:799-807.
    • (1983) Cell , vol.32 , pp. 799-807
    • Morisato, D.1    Way, J.C.2    Kim, H.J.3    Kleckner, N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.