-
1
-
-
84856264333
-
Impact of small repeat sequences on bacterial genome evolution
-
Delihas N. 2011. Impact of small repeat sequences on bacterial genome evolution. Genome Biol. Evol. 3:959-973.
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 959-973
-
-
Delihas, N.1
-
2
-
-
0002331669
-
Miniature inverted-repeat transposable elements and their relationship to established DNA transposons
-
Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), American Society for Microbiology, Washington, DC
-
Feschotte C, Zhang X, Wessler SR. 2002. Miniature inverted-repeat transposable elements and their relationship to established DNA transposons. In Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), Mobile DNA II. American Society for Microbiology, Washington, DC.
-
(2002)
Mobile DNA II
-
-
Feschotte, C.1
Zhang, X.2
Wessler, S.R.3
-
4
-
-
0024266651
-
A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae
-
Correia FF, Inouye S, Inouye M. 1988. A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae. J. Biol. Chem. 263:12194-12198.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 12194-12198
-
-
Correia, F.F.1
Inouye, S.2
Inouye, M.3
-
5
-
-
80053919660
-
Miniature transposable sequences are frequently mobilized in the bacterial plant pathogen Pseudomonas syringae pv. phaseolocola
-
doi:10.1371/journal.pone.0025773
-
Bardaji L, Añorga M, Jackson RW, Martínez-Bilbao A, Yanguas-Casás N. 2011. Miniature transposable sequences are frequently mobilized in the bacterial plant pathogen Pseudomonas syringae pv. phaseolocola. PLoS One 6:e25773. doi:10.1371/journal.pone.0025773.
-
(2011)
PLoS One
, vol.6
-
-
Bardaji, L.1
Añorga, M.2
Jackson, R.W.3
Martínez-Bilbao, A.4
Yanguas-Casás, N.5
-
6
-
-
37749047898
-
Enterobacterial small mobile sequences carry open reading frames and are found intragenically-evolutionary implications for formation of new peptides
-
Delihas N. 2007. Enterobacterial small mobile sequences carry open reading frames and are found intragenically-evolutionary implications for formation of new peptides. Gene Regul. Syst. Biol. 1:191-205.
-
(2007)
Gene Regul. Syst. Biol.
, vol.1
, pp. 191-205
-
-
Delihas, N.1
-
7
-
-
0025761156
-
ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria
-
Hulton CS, Higgins CF, Sharp PM. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:825-834.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 825-834
-
-
Hulton, C.S.1
Higgins, C.F.2
Sharp, P.M.3
-
8
-
-
79551690292
-
Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators
-
Lin S, Hass S, Zemojtel T, Xiao P, Vingron M, Li R. 2011. Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators. Gene 473:139-149.
-
(2011)
Gene
, vol.473
, pp. 139-149
-
-
Lin, S.1
Hass, S.2
Zemojtel, T.3
Xiao, P.4
Vingron, M.5
Li, R.6
-
9
-
-
0035980680
-
Whole-genome organization and functional properties of miniature DNA insertion sequences conserved in pathogenic Neisseriae
-
Mazzone M, De Gregorio E, Lavitola A, Paqliarulo C, Alifano P, Di Nocera PP. 2001. Whole-genome organization and functional properties of miniature DNA insertion sequences conserved in pathogenic Neisseriae. Gene 278:211-222.
-
(2001)
Gene
, vol.278
, pp. 211-222
-
-
Mazzone, M.1
De Gregorio, E.2
Lavitola, A.3
Paqliarulo, C.4
Alifano, P.5
Di Nocera, P.P.6
-
10
-
-
84864020007
-
Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population
-
Nelson WC, Bhaya D, Heidelberg JF. 2012. Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population. J. Bacteriol. 194:3636-3642.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 3636-3642
-
-
Nelson, W.C.1
Bhaya, D.2
Heidelberg, J.F.3
-
11
-
-
0034644597
-
Selfish DNA in protein-coding genes of Rickettsia
-
Ogata H, Audic S, Barbe V, Artiquenave F, Fournier PE, Raoult D, Claverie JM. 2000. Selfish DNA in protein-coding genes of Rickettsia. Science 290:347-350.
-
(2000)
Science
, vol.290
, pp. 347-350
-
-
Ogata, H.1
Audic, S.2
Barbe, V.3
Artiquenave, F.4
Fournier, P.E.5
Raoult, D.6
Claverie, J.M.7
-
12
-
-
0032824652
-
Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae
-
Oggioni MR, Claverys JP. 1999. Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae. Microbiology 145:2647-2653.
-
(1999)
Microbiology
, vol.145
, pp. 2647-2653
-
-
Oggioni, M.R.1
Claverys, J.P.2
-
13
-
-
84855894340
-
E622, a miniature, virulence-associated mobile element
-
Stavrinides J, Kirzinger MWB, Beasley FC, Guttman DS. 2012. E622, a miniature, virulence-associated mobile element. J. Bacteriol. 194:509-517.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 509-517
-
-
Stavrinides, J.1
Kirzinger, M.W.B.2
Beasley, F.C.3
Guttman, D.S.4
-
14
-
-
36849025572
-
Nezha, a novel active miniature invertedrepeat transposable element in cyanobacteria
-
Zhou F, Tran T, Xu Y. 2008. Nezha, a novel active miniature invertedrepeat transposable element in cyanobacteria. Biochem. Biophys. Res. Commun. 365:790-794.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.365
, pp. 790-794
-
-
Zhou, F.1
Tran, T.2
Xu, Y.3
-
15
-
-
33645686073
-
Huanglongbing: a destructive, newly-emerging, centuryold disease of citrus
-
Bové JM. 2006. Huanglongbing: a destructive, newly-emerging, centuryold disease of citrus. J. Plant Pathol. 88:7-37.
-
(2006)
J. Plant Pathol.
, vol.88
, pp. 7-37
-
-
Bové, J.M.1
-
16
-
-
42149118095
-
Observations on yellow shoot of citrus
-
Lin KH. 1956. Observations on yellow shoot of citrus. Acta Phytopathol. Sin. 2:1-11.
-
(1956)
Acta Phytopathol. Sin.
, vol.2
, pp. 1-11
-
-
Lin, K.H.1
-
17
-
-
41049095047
-
The studies on detection of citrus Huanglongbing pathogen by polymerase chain reaction
-
Deng X, Tang W. 1996. The studies on detection of citrus Huanglongbing pathogen by polymerase chain reaction. J. South China Agric. Univ. 17:119-120.
-
(1996)
J. South China Agric. Univ.
, vol.17
, pp. 119-120
-
-
Deng, X.1
Tang, W.2
-
18
-
-
77953203159
-
Detection and quantitation of citrus Huanglongbing pathogen by polymerase chain reaction
-
Tian Y, Ke S, Ke C. 1996. Detection and quantitation of citrus Huanglongbing pathogen by polymerase chain reaction. Acta Phytopathol. Sin. 26:243-250.
-
(1996)
Acta Phytopathol. Sin.
, vol.26
, pp. 243-250
-
-
Tian, Y.1
Ke, S.2
Ke, C.3
-
19
-
-
22444447041
-
First report of the causal agent of huanglongbing ('Candidatus Liberibacter asiaticus') in Brazil
-
Coletta-Filho HD, Targon MLPN, Takita MA, De Negri JD, Pompeu J, Machado MA, Amaral AM, Muller GW. 2004. First report of the causal agent of huanglongbing ('Candidatus Liberibacter asiaticus') in Brazil. Plant Dis. 88:1832.
-
(2004)
Plant Dis.
, vol.88
, pp. 1832
-
-
Coletta-Filho, H.D.1
Targon, M.L.P.N.2
Takita, M.A.3
De Negri, J.D.4
Pompeu, J.5
Machado, M.A.6
Amaral, A.M.7
Muller, G.W.8
-
21
-
-
84873914210
-
First report of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing (HLB) in California
-
Kumagai L, Levesque C, Blomquist CL, Madishetty K, Guo YY, Woods P, Rooney-Latham S, Rascoe J, Gallindo T, Schnabel D, Polek M. 2013. First report of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing (HLB) in California. Plant Dis. 97:283.
-
(2013)
Plant Dis.
, vol.97
, pp. 283
-
-
Kumagai, L.1
Levesque, C.2
Blomquist, C.L.3
Madishetty, K.4
Guo, Y.Y.5
Woods, P.6
Rooney-Latham, S.7
Rascoe, J.8
Gallindo, T.9
Schnabel, D.10
Polek, M.11
-
22
-
-
67650447697
-
Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics
-
Duan Y, Zhou L, Hall DG, Li W, Doddapaneni H, Lin H, Liu L, Vahling CM, Gabriel DW, Williams KP, Dickerman A, Sun Y, Gottwald T. 2009. Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol. Plant Microbe Interact. 22:1011-1020.
-
(2009)
Mol. Plant Microbe Interact.
, vol.22
, pp. 1011-1020
-
-
Duan, Y.1
Zhou, L.2
Hall, D.G.3
Li, W.4
Doddapaneni, H.5
Lin, H.6
Liu, L.7
Vahling, C.M.8
Gabriel, D.W.9
Williams, K.P.10
Dickerman, A.11
Sun, Y.12
Gottwald, T.13
-
23
-
-
79952592800
-
'Ca. Liberibacter asiaticus' carries an excision plasmid prophage and a chromosomally integrated prophage that becomes lytic in plant infections
-
Zhang S, Flores-Cruz Z, Zhou L, Kang BH, Fleites L, Gooch MD, Wulff NA, Davis MJ, Duan Y, Gabriel DW. 2011. 'Ca. Liberibacter asiaticus' carries an excision plasmid prophage and a chromosomally integrated prophage that becomes lytic in plant infections. Mol. Plant Microbe Interact. 24:458-468.
-
(2011)
Mol. Plant Microbe Interact.
, vol.24
, pp. 458-468
-
-
Zhang, S.1
Flores-Cruz, Z.2
Zhou, L.3
Kang, B.H.4
Fleites, L.5
Gooch, M.D.6
Wulff, N.A.7
Davis, M.J.8
Duan, Y.9
Gabriel, D.W.10
-
24
-
-
80052801990
-
Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats
-
Zhou L, Powell CA, Hoffman MT, Fan G, Liu B, Lin H, Duan Y. 2011. Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats. Appl. Environ. Microbiol. 77:6663-6673.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 6663-6673
-
-
Zhou, L.1
Powell, C.A.2
Hoffman, M.T.3
Fan, G.4
Liu, B.5
Lin, H.6
Duan, Y.7
-
25
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"
-
doi:10.1073/pnas.0506758102
-
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, Peterson JD, Hauser CR, Sundaram JP, Nelson WC, Madupu R, Brinkac LM, Dodson RJ, Rosovitz MJ, Sullivan SA, Daugherty SC, Haft DH, Selengut J, Gwinn ML, Zhou L, Zafar N, Khouri H, Radune D, Dimitrov G, Watkins K, O'Connor KJ, Smith S, Utterback TR, White O, Rubens CE, Grandi G, Madoff LC, Kasper DL, Telford JL, Wessels MR, Rappuoli R, Fraser CM. 2005. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc. Natl. Acad. Sci. U. S. A. 102:13950-13955. doi:10.1073/pnas.0506758102.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
Donati, C.4
Medini, D.5
Ward, N.L.6
Angiuoli, S.V.7
Crabtree, J.8
Jones, A.L.9
Durkin, A.S.10
Deboy, R.T.11
Davidsen, T.M.12
Mora, M.13
Scarselli, M.14
Margarit y Ros, I.15
Peterson, J.D.16
Hauser, C.R.17
Sundaram, J.P.18
Nelson, W.C.19
Madupu, R.20
Brinkac, L.M.21
Dodson, R.J.22
Rosovitz, M.J.23
Sullivan, S.A.24
Daugherty, S.C.25
Haft, D.H.26
Selengut, J.27
Gwinn, M.L.28
Zhou, L.29
Zafar, N.30
Khouri, H.31
Radune, D.32
Dimitrov, G.33
Watkins, K.34
O'Connor, K.J.35
Smith, S.36
Utterback, T.R.37
White, O.38
Rubens, C.E.39
Grandi, G.40
Madoff, L.C.41
Kasper, D.L.42
Telford, J.L.43
Wessels, M.R.44
Rappuoli, R.45
Fraser, C.M.46
more..
-
26
-
-
77953178850
-
Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats
-
Chen J, Deng X, Sun X, Jones D, Irey M, Civerolo E. 2010. Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats. Phytopathology 100:567-572.
-
(2010)
Phytopathology
, vol.100
, pp. 567-572
-
-
Chen, J.1
Deng, X.2
Sun, X.3
Jones, D.4
Irey, M.5
Civerolo, E.6
-
27
-
-
79955420678
-
Analysis of a prophage gene frequency revealed population variation of 'Candidatus Liberibacter asiaticus' from two citrus-growing provinces in China
-
Liu R, Zhang P, Pu X, Xing X, Chen J, Deng X. 2011. Analysis of a prophage gene frequency revealed population variation of 'Candidatus Liberibacter asiaticus' from two citrus-growing provinces in China. Plant Dis. 95:431-435.
-
(2011)
Plant Dis.
, vol.95
, pp. 431-435
-
-
Liu, R.1
Zhang, P.2
Pu, X.3
Xing, X.4
Chen, J.5
Deng, X.6
-
28
-
-
70249108186
-
Evaluation of genetic diversity among 'Candidatus Liberibacter asiaticus' isolates collected in Southeast Asia
-
Tomimura K, Miyata S, Furuya N, Kubota K, Okuda M, Subandiyah S, Hung TH, Su HJ, Iwanami T. 2009. Evaluation of genetic diversity among 'Candidatus Liberibacter asiaticus' isolates collected in Southeast Asia. Phytopathology 99:1062-1069.
-
(2009)
Phytopathology
, vol.99
, pp. 1062-1069
-
-
Tomimura, K.1
Miyata, S.2
Furuya, N.3
Kubota, K.4
Okuda, M.5
Subandiyah, S.6
Hung, T.H.7
Su, H.J.8
Iwanami, T.9
-
29
-
-
84863287200
-
Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus.'
-
doi:10.1186/1471-2180-12-18
-
Wang X, Zhou C, Deng X, Su H, Chen J. 2012. Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus.' BMC Microbiol. 12:18. doi:10.1186/1471-2180-12-18.
-
(2012)
BMC Microbiol.
, vol.12
, pp. 18
-
-
Wang, X.1
Zhou, C.2
Deng, X.3
Su, H.4
Chen, J.5
-
30
-
-
0028306461
-
The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria
-
Jagoueix S, Bové JM, Garnier M. 1994. The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria. Int. J. Syst. Bacteriol. 44:379-386.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 379-386
-
-
Jagoueix, S.1
Bové, J.M.2
Garnier, M.3
-
31
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
Murray MG, Thompson WF. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 4321-4325
-
-
Murray, M.G.1
Thompson, W.F.2
-
32
-
-
0033990048
-
Primer 3 on theWWWfor general users and for biological programmers
-
Rozen S, Skaletsky HJ. 2000. Primer 3 on theWWWfor general users and for biological programmers. Methods Mol. Biol. 132:365-386.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.J.2
-
33
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
35
-
-
23144452801
-
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
-
doi:10.1093/nar/gki487
-
Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:W451-W454. doi:10.1093/nar/gki487.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
36
-
-
48449095385
-
The Vienna RNA Websuite
-
doi:10.1093/nar/gkn188
-
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL. 2008. The Vienna RNA Websuite. Nucleic Acids Res. 36:W70-W74. doi:10.1093/nar/gkn188.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neuböck, R.4
Hofacker, I.L.5
-
38
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
39
-
-
33644873699
-
ISfinder: the reference centre for bacterial insertion sequences
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. 2006. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34:D32-D36.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
40
-
-
2542625925
-
The helixturn- helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding
-
Rousseau P, Gueguen E, Duval-Valentin Chandler M. 2004. The helixturn- helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding. Nucleic Acids Res. 32:1335-1344.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1335-1344
-
-
Rousseau, P.1
Gueguen, E.2
Duval-Valentin Chandler, M.3
-
41
-
-
0020504897
-
Tn10 transposase acts preferentially on nearby transposon ends in vivo
-
Morisato D, Way JC, Kim HJ, Kleckner N. 1983. Tn10 transposase acts preferentially on nearby transposon ends in vivo. Cell 32:799-807.
-
(1983)
Cell
, vol.32
, pp. 799-807
-
-
Morisato, D.1
Way, J.C.2
Kim, H.J.3
Kleckner, N.4
|