메뉴 건너뛰기




Volumn 194, Issue 14, 2012, Pages 3636-3642

Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENETICS; CELL VIABILITY; CONTROLLED STUDY; GENE DELETION; GENE DOSAGE; GENE INSERTION; GENE INSERTION SEQUENCE; METAGENOMICS; MICROBIAL POPULATION DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SYNECHOCOCCUS; SYNTENY; TRANSPOSON;

EID: 84864020007     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00333-12     Document Type: Article
Times cited : (6)

References (41)
  • 1
    • 33749576307 scopus 로고    scopus 로고
    • Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity
    • Abergel C, et al. 2006. Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity. Mol. Biol. Evol. 23: 2112-2122.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2112-2122
    • Abergel, C.1
  • 3
    • 38649116679 scopus 로고    scopus 로고
    • Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection
    • Barabas O, et al. 2008. Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection. Cell 132: 208-220.
    • (2008) Cell , vol.132 , pp. 208-220
    • Barabas, O.1
  • 4
    • 36849028589 scopus 로고    scopus 로고
    • Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
    • Bhaya D, et al. 2007. Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses. ISME J. 1:703-713.
    • (2007) ISME J , vol.1 , pp. 703-713
    • Bhaya, D.1
  • 5
    • 0037050279 scopus 로고    scopus 로고
    • Mobile elements in archaeal genomes
    • Brugger K, et al. 2002. Mobile elements in archaeal genomes. FEMS Microbiol. Lett. 206:131-141.
    • (2002) FEMS Microbiol. Lett. , vol.206 , pp. 131-141
    • Brugger, K.1
  • 6
    • 0037014604 scopus 로고    scopus 로고
    • Transposon-like Correia elements: structure, distribution and genetic exchange between pathogenic Neisseria sp
    • Buisine N, Tang CM, Chalmers R. 2002. Transposon-like Correia elements: structure, distribution and genetic exchange between pathogenic Neisseria sp. FEBS Lett. 522:52-58.
    • (2002) FEBS Lett , vol.522 , pp. 52-58
    • Buisine, N.1    Tang, C.M.2    Chalmers, R.3
  • 7
    • 0028053180 scopus 로고
    • Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses
    • Bureau TE, Wessler SR. 1994. Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses. Proc. Natl. Acad. Sci. U. S. A. 91:1411-1415.
    • (1994) Proc. Natl. Acad. Sci. U. S. A. , vol.91 , pp. 1411-1415
    • Bureau, T.E.1    Wessler, S.R.2
  • 8
    • 0028450046 scopus 로고
    • Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants
    • Bureau TE, Wessler SR. 1994. Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6:907-916.
    • (1994) Plant Cell , vol.6 , pp. 907-916
    • Bureau, T.E.1    Wessler, S.R.2
  • 9
    • 0026940433 scopus 로고
    • Tourist: a large family of small inverted repeat elements frequently associated with maize genes
    • Bureau TE, Wessler SR. 1992. Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4:1283- 1294.
    • (1992) Plant Cell , vol.4 , pp. 1283-1294
    • Bureau, T.E.1    Wessler, S.R.2
  • 10
    • 85158048416 scopus 로고    scopus 로고
    • Insertion sequences revisited
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), American Society for Microbiology, Washington, DC
    • Chandler M, Mahillon J. 2002. Insertion sequences revisited, p 305-366. In Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), Mobile DNA II. American Society for Microbiology, Washington, DC.
    • (2002) Mobile DNA II , pp. 305-366
    • Chandler, M.1    Mahillon, J.2
  • 11
    • 0042031249 scopus 로고    scopus 로고
    • Identification of long intergenic repeat sequences associated with DNA methylation sites in Caulobacter crescentus and other alpha-proteobacteria
    • Chen SL, Shapiro L. 2003. Identification of long intergenic repeat sequences associated with DNA methylation sites in Caulobacter crescentus and other alpha-proteobacteria. J. Bacteriol. 185:4997-5002.
    • (2003) J. Bacteriol. , vol.185 , pp. 4997-5002
    • Chen, S.L.1    Shapiro, L.2
  • 12
    • 0024266651 scopus 로고
    • A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae
    • Correia FF, Inouye S, Inouye M. 1988. A family of small repeated elements with some transposon-like properties in the genome of Neisseria gonorrhoeae. J. Biol. Chem. 263:12194 -12198.
    • (1988) J. Biol. Chem. , vol.263 , pp. 12194-12198
    • Correia, F.F.1    Inouye, S.2    Inouye, M.3
  • 13
    • 28044466642 scopus 로고    scopus 로고
    • Enterobacterial repetitive intergenic consensus sequence repeats in yersiniae: genomic organization and functional properties
    • De Gregorio E, Silvestro G, Petrillo M, Carlomagno MS, Di Nocera PP. 2005. Enterobacterial repetitive intergenic consensus sequence repeats in yersiniae: genomic organization and functional properties. J. Bacteriol. 187:7945-7954.
    • (2005) J. Bacteriol. , vol.187 , pp. 7945-7954
    • De Gregorio, E.1    Silvestro, G.2    Petrillo, M.3    Carlomagno, M.S.4    Di Nocera, P.P.5
  • 15
    • 37749047898 scopus 로고    scopus 로고
    • Enterobacterial small mobile sequences carry open read-ing frames and are found intragenically-evolutionary implications for formation of new peptides
    • Delihas N. 2007. Enterobacterial small mobile sequences carry open read-ing frames and are found intragenically- evolutionary implications for formation of new peptides. Gene Regul. Syst. Biol. 1:191-205.
    • (2007) Gene Regul. Syst. Biol. , vol.1 , pp. 191-205
    • Delihas, N.1
  • 16
    • 84856264333 scopus 로고    scopus 로고
    • Impact of small repeat sequences on bacterial genome evolution
    • Delihas N. 2011. Impact of small repeat sequences on bacterial genome evolution. Genome Biol. Evol. 3:959 -973.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 959-973
    • Delihas, N.1
  • 17
    • 37749013007 scopus 로고    scopus 로고
    • Small mobile sequences in bacteria display diverse structure/ function motifs
    • Delihas N. 2008. Small mobile sequences in bacteria display diverse structure/ function motifs. Mol. Microbiol. 67:475- 481.
    • (2008) Mol. Microbiol. , vol.67 , pp. 475-481
    • Delihas, N.1
  • 18
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • doi: 10.1186/1471-2105-5-113
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. doi: 10.1186/1471-2105-5-113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 19
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris MJ, Muyzer G, Ward DM. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62:340 -346.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 340-346
    • Ferris, M.J.1    Muyzer, G.2    Ward, D.M.3
  • 20
    • 85158058496 scopus 로고    scopus 로고
    • Miniature inverted-repeat transposable elements and their relationship to established DNA transposons
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), ASM Press, Washington, DC
    • Feschotte C, Zhang X, Wessler SR. 2002. Miniature inverted-repeat transposable elements and their relationship to established DNA transposons, p 1147-1158. In Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), Mobile DNA II. ASM Press, Washington, DC.
    • (2002) Mobile DNA II , pp. 1147-1158
    • Feschotte, C.1    Zhang, X.2    Wessler, S.R.3
  • 21
    • 0023297810 scopus 로고
    • A transcriptional terminator sequence in the prokaryotic transposable element IS1
    • Hubner P, Iida S, Arber W. 1987. A transcriptional terminator sequence in the prokaryotic transposable element IS1. Mol. Gen. Genet. 206:485- 490.
    • (1987) Mol. Gen. Genet. , vol.206 , pp. 485-490
    • Hubner, P.1    Iida, S.2    Arber, W.3
  • 22
    • 0025761156 scopus 로고
    • ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria
    • Hulton CS, Higgins CF, Sharp PM. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:825- 834.
    • (1991) Mol. Microbiol. , vol.5 , pp. 825-834
    • Hulton, C.S.1    Higgins, C.F.2    Sharp, P.M.3
  • 23
    • 0346034923 scopus 로고    scopus 로고
    • An active DNA transposon family in rice
    • Jiang N, et al. 2003. An active DNA transposon family in rice. Nature 421:163-167.
    • (2003) Nature , vol.421 , pp. 163-167
    • Jiang, N.1
  • 24
    • 0027145188 scopus 로고
    • Two putative insertion sequences flank a truncated glycogen branching enzyme gene in the thermophile Bacillus stearothermophilus CU21
    • Kiel JA, Boels JM, Ten Berge AM, Venema G. 1993. Two putative insertion sequences flank a truncated glycogen branching enzyme gene in the thermophile Bacillus stearothermophilus CU21. Mitochondrial DNA 4:1-9.
    • (1993) Mitochondrial DNA , vol.4 , pp. 1-9
    • Kiel, J.A.1    Boels, J.M.2    Ten Berge, A.M.3    Venema, G.4
  • 25
    • 0346003772 scopus 로고    scopus 로고
    • The plant MITE mPing is mobilized in anther culture
    • Kikuchi K, Terauchi K, Wada M, Hirano HY. 2003. The plant MITE mPing is mobilized in anther culture. Nature 421:167-170.
    • (2003) Nature , vol.421 , pp. 167-170
    • Kikuchi, K.1    Terauchi, K.2    Wada, M.3    Hirano, H.Y.4
  • 26
    • 34447499141 scopus 로고    scopus 로고
    • Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship toDNAuptake
    • doi:10.1186/ gb-2007-8-2-r22
    • Kingsford CL, Ayanbule K, Salzberg SL. 2007. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship toDNAuptake. Genome Biol. 8:R22. doi:10.1186/ gb-2007-8-2-r22.
    • (2007) Genome Biol , vol.8
    • Kingsford, C.L.1    Ayanbule, K.2    Salzberg, S.L.3
  • 27
    • 79551690292 scopus 로고    scopus 로고
    • Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators
    • Lin S, et al. 2011. Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators. Gene 473:139 -149.
    • (2011) Gene , vol.473 , pp. 139-149
    • Lin, S.1
  • 28
    • 0035980680 scopus 로고    scopus 로고
    • Whole-genome organization and functional properties of miniatureDNAinsertion sequences conserved in pathogenic Neisseriae
    • Mazzone M, et al. 2001. Whole-genome organization and functional properties of miniatureDNAinsertion sequences conserved in pathogenic Neisseriae. Gene 278:211-222.
    • (2001) Gene , vol.278 , pp. 211-222
    • Mazzone, M.1
  • 29
    • 0019470502 scopus 로고
    • Inactivation of the Serratia marcescens gene for the lipoprotein in Escherichia coli by insertion sequences, IS1 and IS5; sequence analysis of junction points
    • Nakamura K, Inouye M. 1981. Inactivation of the Serratia marcescens gene for the lipoprotein in Escherichia coli by insertion sequences, IS1 and IS5; sequence analysis of junction points. Mol. Gen. Genet. 183:107-114.
    • (1981) Mol. Gen. Genet. , vol.183 , pp. 107-114
    • Nakamura, K.1    Inouye, M.2
  • 30
    • 0037426878 scopus 로고    scopus 로고
    • Mobilization of a transposon in the rice genome
    • Nakazaki T, et al. 2003. Mobilization of a transposon in the rice genome. Nature 421:170 -172.
    • (2003) Nature , vol.421 , pp. 170-172
    • Nakazaki, T.1
  • 31
    • 79961082576 scopus 로고    scopus 로고
    • Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance
    • Nelson WC, Wollerman L, Bhaya D, Heidelberg JF. 2011. Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance. Appl. Environ. Microbiol. 77:5458 -5466.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 5458-5466
    • Nelson, W.C.1    Wollerman, L.2    Bhaya, D.3    Heidelberg, J.F.4
  • 32
    • 0034644597 scopus 로고    scopus 로고
    • Selfish DNA in protein-coding genes of Rickettsia
    • Ogata H, et al. 2000. Selfish DNA in protein-coding genes of Rickettsia. Science 290:347-350.
    • (2000) Science , vol.290 , pp. 347-350
    • Ogata, H.1
  • 33
    • 0032824652 scopus 로고    scopus 로고
    • Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae
    • Oggioni MR, Claverys JP. 1999. Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae. Microbiology 145:2647-2653.
    • (1999) Microbiology , vol.145 , pp. 2647-2653
    • Oggioni, M.R.1    Claverys, J.P.2
  • 34
    • 67049173062 scopus 로고    scopus 로고
    • Integron mobilization unit as a source of mobility of antibiotic resistance genes
    • Poirel L, Carrer A, Pitout JD, Nordmann P. 2009. Integron mobilization unit as a source of mobility of antibiotic resistance genes. Antimicrob. Agents Chemother. 53:2492-2498.
    • (2009) Antimicrob. Agents Chemother. , vol.53 , pp. 2492-2498
    • Poirel, L.1    Carrer, A.2    Pitout, J.D.3    Nordmann, P.4
  • 35
    • 0024999660 scopus 로고
    • A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes
    • Sharples GJ, Lloyd RG. 1990. A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes. Nucleic Acids Res. 18: 6503-6508.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6503-6508
    • Sharples, G.J.1    Lloyd, R.G.2
  • 38
    • 54049108449 scopus 로고    scopus 로고
    • Multiple sequence alignment using ClustalW and ClustalX
    • Bioinformatics Chapter 2:Unit 2.3. doi:10.1002/0471250953.bi0203s00
    • Thompson JD, Gibson TJ, Higgins DG. 2002. Multiple sequence alignment using ClustalW and ClustalX. Curr. Protoc. Bioinformatics Chapter 2:Unit 2.3. doi:10.1002/0471250953.bi0203s00.
    • (2002) Curr. Protoc.
    • Thompson, J.D.1    Gibson, T.J.2    Higgins, D.G.3
  • 39
    • 34047240364 scopus 로고    scopus 로고
    • Causes of insertion sequences abundance in prokaryotic genomes
    • Touchon M, Rocha EP. 2007. Causes of insertion sequences abundance in prokaryotic genomes. Mol. Biol. Evol. 24:969 -981.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 969-981
    • Touchon, M.1    Rocha, E.P.2
  • 40
    • 77957846955 scopus 로고    scopus 로고
    • The insertion sequences of Anabaena sp. strain PCC 7120 and their effects on its open reading frames
    • Wolk CP, Lechno-Yossef S, Jager KM. 2010. The insertion sequences of Anabaena sp. strain PCC 7120 and their effects on its open reading frames. J. Bacteriol. 192:5289 -5303.
    • (2010) J. Bacteriol. , vol.192 , pp. 5289-5303
    • Wolk, C.P.1    Lechno-Yossef, S.2    Jager, K.M.3
  • 41
    • 36849025572 scopus 로고    scopus 로고
    • Nezha, a novel active miniature invertedrepeat transposable element in cyanobacteria
    • Zhou F, Tran T, Xu Y. 2008. Nezha, a novel active miniature invertedrepeat transposable element in cyanobacteria. Biochem. Biophys. Res. Commun. 365:790 -794.
    • (2008) Biochem. Biophys. Res. Commun. , vol.365 , pp. 790-794
    • Zhou, F.1    Tran, T.2    Xu, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.