-
1
-
-
84859863444
-
Empirically determining the sample size for largescale gene network inference algorithms
-
Altay G (2012). Empirically determining the sample size for largescale gene network inference algorithms. IET Syst Biol 6: 35- 63.
-
(2012)
IET Syst Biol
, vol.6
, pp. 35
-
-
Altay, G.1
-
2
-
-
79960556206
-
Differential C3NET reveals disease networks of direct physical interactions
-
Altay G, Asim M, Markowetz F, Neal DE (2011). Differential C3NET reveals disease networks of direct physical interactions. BMC Bioinformatics 12: 296.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 296
-
-
Altay, G.1
Asim, M.2
Markowetz, F.3
Neal, D.E.4
-
3
-
-
77957141016
-
Inferring the conservative causal core of gene regulatory networks
-
Altay G, Emmert-Streib F (2010a). Inferring the conservative causal core of gene regulatory networks. BMC Syst Biol 4: 132
-
(2010)
BMC Syst Biol
, vol.4
, pp. 132
-
-
Altay, G.1
Emmert-Streib, F.2
-
4
-
-
77954484005
-
Revealing differences in gene network inference algorithms on the network-level by ensemble methods
-
Altay G, Emmert-Streib F (2010b). Revealing differences in gene network inference algorithms on the network-level by ensemble methods. Bioinformatics 26: 1738-1744.
-
(2010)
Bioinformatics
, vol.26
, pp. 1738-1744
-
-
Altay, G.1
Emmert-Streib, F.2
-
5
-
-
79959327654
-
Structural influence of gene networks on their inference: Analysis of C3NET
-
Altay G, Emmert-Streib F (2011). Structural influence of gene networks on their inference: analysis of C3NET. Biol Direct 6: 31.
-
(2011)
Biol Direct
, vol.6
, pp. 31
-
-
Altay, G.1
Emmert-Streib, F.2
-
6
-
-
0034710924
-
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
-
Butte A, Tamayo P, Slonim D, Golub T, Kohane I (2000). Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. P Natl Acad Sci USA 97: 12182-12186
-
(2000)
P Natl Acad Sci USA
, vol.97
, pp. 12182-12186
-
-
Butte, A.1
Tamayo, P.2
Slonim, D.3
Golub, T.4
Kohane, I.5
-
7
-
-
75549083295
-
The molecular interaction database 2009 update
-
Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G (2009). The molecular interaction database 2009 update. Nucleic Acids Res 37: D532-D539.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Ceol, A.1
Chatr Aryamontri, A.2
Licata, L.3
Peluso, D.4
Briganti, L.5
Perfetto, L.6
Castagnoli, L.7
Cesareni, G.8
-
8
-
-
84861527388
-
The genomic and transcriptomic architecture of 2000 breast tumours reveals novel subgroups
-
Curtis C, Shah SP, Chin SF, Turashvili G, Rueda OM, Dunning MJ, Speed D, Lynch AG, Samarajiwa S, Yuan Y et al. (2012). The genomic and transcriptomic architecture of 2000 breast tumours reveals novel subgroups. Nature 486: 346-352.
-
(2012)
Nature
, vol.486
, pp. 346-352
-
-
Curtis, C.1
Shah, S.P.2
Chin, S.F.3
Turashvili, G.4
Rueda, O.M.5
Dunning, M.J.6
Speed, D.7
Lynch, A.G.8
Samarajiwa, S.9
Yuan, Y.10
-
9
-
-
84867281937
-
A study on the characterization and pathogenicity of bacteria from Lymantria dispar L. (Lepidoptera: Lymantriidae)
-
Demir I, Eryüzlü E, Demirbaǧ Z (2012). A study on the characterization and pathogenicity of bacteria from Lymantria dispar L. (Lepidoptera: Lymantriidae). Turk J Biol 36: 459-468.
-
(2012)
Turk J Biol
, vol.36
, pp. 459-468
-
-
Demir, I.1
Eryüzlü, E.2
Demirbaǧ, Z.3
-
10
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
-
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS (2007). Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol 5: e8.
-
(2007)
PLoS Biol
, vol.5
-
-
Faith, J.J.1
Hayete, B.2
Thaden, J.T.3
Mogno, I.4
Wierzbowski, J.5
Cottarel, G.6
Kasif, S.7
Collins, J.J.8
Gardner, T.S.9
-
12
-
-
34047118042
-
Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion
-
Fury W, Batliwalla F, Gregersen PK, Li W (2006). Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion. Conf Proc IEEE Eng Med Biol Soc 1: 5531-5534.
-
(2006)
Conf Proc IEEE Eng Med Biol Soc
, vol.1
, pp. 5531-5534
-
-
Fury, W.1
Batliwalla, F.2
Gregersen, P.K.3
Li, W.4
-
13
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
Kerrien S, Aranda B, Breuza L, Bridge A, Broackes-Carter F, Chen C, Duesbury M, Dumousseau M, Feuermann M, Hinz U et al. (2012). The IntAct molecular interaction database in 2012. Nucleic Acids Res 40: D841-D846.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
-
14
-
-
58149193222
-
Human Protein Reference Database - 2009 Update
-
Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A et al. (2009). Human Protein Reference Database - 2009 Update. Nucleic Acids Res 37: D767-772.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
15
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin A, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A (2006). ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 7: S7.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Margolin, A.1
Nemenman, I.2
Basso, K.3
Wiggins, C.4
Stolovitzky, G.5
Dalla Favera, R.6
Califano, A.7
-
16
-
-
36248999573
-
Information-theoretic inference of large transcriptional regulatory networks
-
Meyer P, Kontos K, Bontempi G (2007). Information-theoretic inference of large transcriptional regulatory networks. EURASIP J Bioinform Syst Biol 1: 79879.
-
(2007)
EURASIP J Bioinform Syst Biol
, vol.1
, pp. 79879
-
-
Meyer, P.1
Kontos, K.2
Bontempi, G.3
-
17
-
-
59949086432
-
Minet: R/bioconductor package for inferring large transcriptional networks using mutual information
-
Meyer P, Lafitte FK, Bontempi G, (2008) minet: r/bioconductor package for inferring large transcriptional networks using mutual information. BMC Bioinformatics 9: 461.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 461
-
-
Meyer, P.1
Lafitte, F.K.2
Bontempi, G.3
-
18
-
-
78650773077
-
A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks
-
Narendra V, Lytkin NI, Aliferis CF, Statnikov A (2011) A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks. Genomics 97: 7-18.
-
(2011)
Genomics
, vol.97
, pp. 7-18
-
-
Narendra, V.1
Lytkin, N.I.2
Aliferis, C.F.3
Statnikov, A.4
-
19
-
-
25144516911
-
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
-
Ramani AK, Bunescu RC, Mooney RJ, Marcotte EM (2005). Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome. Genome Biol 6: R40.
-
(2005)
Genome Biol
, vol.6
-
-
Ramani, A.K.1
Bunescu, R.C.2
Mooney, R.J.3
Marcotte, E.M.4
-
20
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T (2005). Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
-
21
-
-
70249134919
-
Molecular networks as sensors and drivers of common human diseases
-
Schadt E (2009). Molecular networks as sensors and drivers of common human diseases. Nature 461: 218-223.
-
(2009)
Nature
, vol.461
, pp. 218-223
-
-
Schadt, E.1
-
22
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
Singh D, Febbo PG, Ross K, Jackson DG, Manola J, Ladd C, Tamayo P, Renshaw AA, D'Amico AV, Richie JP et al. (2002). Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 1: 203-209.
-
(2002)
Cancer Cell
, vol.1
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
-
23
-
-
33644873184
-
BioGrid: A general repository for interaction datasets
-
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M. (2006). BioGrid: a general repository for interaction datasets. Nucleic Acids Res 34: D535-D539.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
25
-
-
77954255681
-
Integrative genomic profiling of human prostate cancer
-
Taylor BS, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver BS, Arora VK, Kaushik P, Cerami E, Reva B et al. (2010). Integrative genomic profiling of human prostate cancer. Cancer Cell 18: 11-22.
-
(2010)
Cancer Cell
, vol.18
, pp. 11-22
-
-
Taylor, B.S.1
Schultz, N.2
Hieronymus, H.3
Gopalan, A.4
Xiao, Y.5
Carver, B.S.6
Arora, V.K.7
Kaushik, P.8
Cerami, E.9
Reva, B.10
-
26
-
-
34347324015
-
Identification and characterization of the rat DVL2 gene using bioinformatic tools
-
Varişli L, Çen O (2007). Identification and characterization of the rat DVL2 gene using bioinformatic tools. Turk J Biol 31: 81-86.
-
(2007)
Turk J Biol
, vol.31
, pp. 81-86
-
-
Varişli, L.1
Çen, O.2
-
27
-
-
33745800831
-
Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes
-
Wang K, Banerjee N, Margolin AA, Nemenman I, Califano A (2006). Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes. Lect Notes Comput Sci 3909: 348-362.
-
(2006)
Lect Notes Comput Sci
, vol.3909
, pp. 348-362
-
-
Wang, K.1
Banerjee, N.2
Margolin, A.A.3
Nemenman, I.4
Califano, A.5
|