메뉴 건너뛰기




Volumn 29, Issue 18, 2013, Pages 2360-2362

ILoops: A protein-protein interaction prediction server based on structural features

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84883486552     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt401     Document Type: Article
Times cited : (41)

References (19)
  • 1
    • 0037250158 scopus 로고    scopus 로고
    • InterPreTS: Protein interaction prediction through tertiary structure
    • Aloy,P. and Russell,R.B. (2003) InterPreTS: Protein interaction prediction through tertiary structure. Bioinformatics, 19, 161-162.
    • (2003) Bioinformatics , vol.19 , pp. 161-162
    • Aloy, P.1    Russell, R.B.2
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 3
    • 38549153238 scopus 로고    scopus 로고
    • Data growth and its impact on the SCOP database: New developments
    • Andreeva,A. et al. (2008) Data growth and its impact on the SCOP database: New developments. Nucleic Acids Res., 36, D419-D425.
    • (2008) Nucleic Acids Res. , vol.36
    • Andreeva, A.1
  • 4
    • 33947328242 scopus 로고    scopus 로고
    • Choosing negative examples for the prediction of protein-protein interactions
    • Ben-Hur,A. and Noble,W.S. (2006) Choosing negative examples for the prediction of protein-protein interactions. BMC Bioinformatics, 7 (Suppl. 1), S2.
    • (2006) BMC Bioinformatics , vol.7 , Issue.SUPPL. 1
    • Ben-Hur, A.1    Noble, W.S.2
  • 5
    • 58149242456 scopus 로고    scopus 로고
    • An experimentally derived confidence score for binary protein- protein interactions
    • Braun,P. et al. (2009) An experimentally derived confidence score for binary protein- protein interactions. Nat. Methods, 6, 91-97.
    • (2009) Nat. Methods , vol.6 , pp. 91-97
    • Braun, P.1
  • 6
    • 0347899425 scopus 로고    scopus 로고
    • ArchDB: Automated protein loop classification as a tool for structural genomics
    • Espadaler,J. et al. (2004) ArchDB: Automated protein loop classification as a tool for structural genomics. Nucleic Acids Res., 32, D185-D188.
    • (2004) Nucleic Acids Res. , vol.32
    • Espadaler, J.1
  • 7
    • 77949528929 scopus 로고    scopus 로고
    • Biana: A software framework for compiling biological interactions and analyzing networks
    • Garcia-Garcia,J. et al. (2010) Biana: A software framework for compiling biological interactions and analyzing networks. BMC Bioinformatics, 11, 56.
    • (2010) BMC Bioinformatics , vol.11 , pp. 56
    • Garcia-Garcia, J.1
  • 8
    • 76749092270 scopus 로고    scopus 로고
    • The WEKA data mining software: An update
    • Hall,M. et al. (2009) The WEKA data mining software: An update. SIGKDD Explor., 11, 10-18.
    • (2009) Sigkdd Explor. , vol.11 , pp. 10-18
    • Hall, M.1
  • 9
    • 0142052944 scopus 로고    scopus 로고
    • A bayesian networks approach for predicting protein-protein interactions from genomic data
    • Jansen,R. et al. (2003) A bayesian networks approach for predicting protein-protein interactions from genomic data. Science, 302, 449-453.
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1
  • 10
    • 0036081482 scopus 로고    scopus 로고
    • Predictome: A database of putative functional links between proteins
    • Mellor,J.C. et al. (2002) Predictome: A database of putative functional links between proteins. Nucleic Acids Res., 30, 306-309.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 306-309
    • Mellor, J.C.1
  • 11
    • 33748135657 scopus 로고    scopus 로고
    • PIPE: A protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs
    • Pitre,S. et al. (2006) PIPE: A protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. BMC Bioinformatics, 7, 365.
    • (2006) BMC Bioinformatics , vol.7 , pp. 365
    • Pitre, S.1
  • 12
    • 84875212699 scopus 로고    scopus 로고
    • Understanding protein-protein interactions using local structural features
    • Planas-Iglesias,J. et al. (2013) Understanding protein-protein interactions using local structural features. J. Mol. Biol., 425, 1210-1224.
    • (2013) J. Mol. Biol. , vol.425 , pp. 1210-1224
    • Planas-Iglesias, J.1
  • 13
    • 0032962457 scopus 로고    scopus 로고
    • Twilight zone of protein sequence alignments
    • Rost,B. (1999) Twilight zone of protein sequence alignments. Protein Eng., 12, 85-94.
    • (1999) Protein Eng. , vol.12 , pp. 85-94
    • Rost, B.1
  • 14
    • 77954278629 scopus 로고    scopus 로고
    • Struct2Net: A web service to predict protein-protein interactions using a structure-based approach
    • Singh,R. et al. (2010) Struct2Net: A web service to predict protein-protein interactions using a structure-based approach. Nucleic Acids Res., 38, W508-W515.
    • (2010) Nucleic Acids Res. , vol.38
    • Singh, R.1
  • 15
    • 38949138554 scopus 로고    scopus 로고
    • Computational prediction of protein-protein interactions
    • Skrabanek,L. et al. (2008) Computational prediction of protein-protein interactions. Mol. Biotechnol., 38, 1-17.
    • (2008) Mol. Biotechnol. , vol.38 , pp. 1-17
    • Skrabanek, L.1
  • 16
    • 75549083088 scopus 로고    scopus 로고
    • The Negatome database: A reference set of non-interacting protein pairs
    • Smialowski,P. et al. (2010) The Negatome database: A reference set of non-interacting protein pairs. Nucleic Acids Res., 38, D540-D544.
    • (2010) Nucleic Acids Res. , vol.38
    • Smialowski, P.1
  • 17
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk,D. et al. (2011) The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
    • (2011) Nucleic Acids Res. , vol.39
    • Szklarczyk, D.1
  • 18
    • 84872394989 scopus 로고    scopus 로고
    • Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments
    • Trabuco,L.G. et al. (2012) Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments. Methods, 58, 343-348.
    • (2012) Methods , vol.58 , pp. 343-348
    • Trabuco, L.G.1
  • 19
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu,H. et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science, 322, 104-110.
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.