-
1
-
-
25144503860
-
Selenoprotein synthesis: A unique translational mechanism used by a diverse family of proteins
-
Hoffmann,P.R. and Berry,M.J. (2005) Selenoprotein synthesis: a unique translational mechanism used by a diverse family of proteins. Thyroid, 15, 769-775
-
(2005)
Thyroid
, vol.15
, pp. 769-775
-
-
Hoffmann, P.R.1
Berry, M.J.2
-
2
-
-
72649106932
-
The selenium to selenoprotein pathway in eukaryotes: More molecular partners than anticipated
-
Allmang,C., Wurth,L. and Krol,A. (2009) The selenium to selenoprotein pathway in eukaryotes: more molecular partners than anticipated. Biochim. Biophys. Acta, 1790, 1415-1423
-
(2009)
Biochim. Biophys. Acta
, vol.1790
, pp. 1415-1423
-
-
Allmang, C.1
Wurth, L.2
Krol, A.3
-
3
-
-
33751098548
-
Selenocysteine incorporation machinery and the role of selenoproteins in development and health
-
Hatfield,D., Carlson,B., Xu,X., Mix,H. and Gladyshev,V. (2006) Selenocysteine incorporation machinery and the role of selenoproteins in development and health. Prog. Nucleic Acid Res. Mol. Biol., 81, 97-142
-
(2006)
Prog. Nucleic Acid Res. Mol. Biol
, vol.81
, pp. 97-142
-
-
Hatfield, D.1
Carlson, B.2
Xu, X.3
Mix, H.4
Gladyshev, V.5
-
4
-
-
45549108749
-
Eukaryotic selenoprotein synthesis: Mechanistic insight incorporating new factors and new functions for old factors
-
Squires,J. and Berry,M. (2008) Eukaryotic selenoprotein synthesis: mechanistic insight incorporating new factors and new functions for old factors. IUBMB Life, 60, 232-235
-
(2008)
IUBMB Life
, vol.60
, pp. 232-235
-
-
Squires, J.1
Berry, M.2
-
5
-
-
1642527890
-
Finding needles in a haystack in silico identification of eukaryotic selenoprotein genes
-
Driscoll,D.M. and Chavatte,L. (2004) Finding needles in a haystack. In silico identification of eukaryotic selenoprotein genes. EMBO Rep., 5, 140-141
-
(2004)
EMBO Rep
, vol.5
, pp. 140-141
-
-
Driscoll, D.M.1
Chavatte, L.2
-
6
-
-
0033607529
-
New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements
-
Kryukov,G.V., Kryukov,V.M. and Gladyshev,V.N. (1999) New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements. J. Biol. Chem., 274, 33888-33897
-
(1999)
J. Biol. Chem
, vol.274
, pp. 33888-33897
-
-
Kryukov, G.V.1
Kryukov, V.M.2
Gladyshev, V.N.3
-
7
-
-
0033621335
-
Novel selenoproteins identified in silico andin vivo by using a conserved rna structural motif
-
Lescure,A., Gautheret,D., Carbon,P. and Krol,A. (1999) Novel selenoproteins identified in silico andin Vivo by using a conserved RNA structural motif. J. Biol. Chem., 274, 38147
-
(1999)
J. Biol. Chem
, vol.274
, pp. 38147
-
-
Lescure, A.1
Gautheret, D.2
Carbon, P.3
Krol, A.4
-
8
-
-
0034872728
-
In silico identification of novel selenoproteins in the drosophila melanogaster genome
-
Castellano,S., Morozova,N., Morey,M., Berry,M., Serras,F., Corominas,M. and Guigo,R. (2001) In silico identification of novel selenoproteins in the Drosophila melanogaster genome. EMBO Rep., 2, 697
-
(2001)
EMBO Rep
, vol.2
, pp. 697
-
-
Castellano, S.1
Morozova, N.2
Morey, M.3
Berry, M.4
Serras, F.5
Corominas, M.6
Guigo, R.7
-
9
-
-
0038442808
-
Characterization of mammalian selenoproteomes
-
Kryukov,G., Castellano,S., Novoselov,S., Lobanov,A., Zehtab,O., Guigo,R. and Gladyshev,V. (2003) Characterization of mammalian selenoproteomes. Science, 300, 1439
-
(2003)
Science
, vol.300
, pp. 1439
-
-
Kryukov, G.1
Castellano, S.2
Novoselov, S.3
Lobanov, A.4
Zehtab, O.5
Guigo, R.6
Gladyshev, V.7
-
10
-
-
2942546160
-
The prokaryotic selenoproteome
-
Kryukov,G. and Gladyshev,V. (2004) The prokaryotic selenoproteome. EMBO Rep., 5, 538
-
(2004)
EMBO Rep
, vol.5
, pp. 538
-
-
Kryukov, G.1
Gladyshev, V.2
-
11
-
-
17644379382
-
Nematode selenoproteome: The use of the selenocysteine insertion system to decode one codon in an animal genome
-
Taskov,K., Chapple,C., Kryukov,G.V., Castellano,S., Lobanov,A.V., Korotkov,K.V., Guigo,R. and Gladyshev,V.N. (2005) Nematode selenoproteome: the use of the selenocysteine insertion system to decode one codon in an animal genome Nucleic Acids Res., 33, 2227-2238
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2227-2238
-
-
Taskov, K.1
Chapple, C.2
Kryukov, G.V.3
Castellano, S.4
Lobanov, A.V.5
Korotkov, K.V.6
Guigo, R.7
Gladyshev, V.N.8
-
12
-
-
67649635453
-
A method for identification of selenoprotein genes in archaeal genomes
-
Li,M., Huang,Y. and Xiao,Y. (2009) A method for identification of selenoprotein genes in archaeal genomes. Genomics Proteomics Bioinformatics, 7, 62-70
-
(2009)
Genomics Proteomics Bioinformatics
, vol.7
, pp. 62-70
-
-
Li, M.1
Huang, Y.2
Xiao, Y.3
-
13
-
-
61449255521
-
SECISaln, a webbased tool for the creation of structure-based alignments of eukaryotic SECIS elements
-
Chapple,C.E., Guigo,R. and Krol,A. (2009) SECISaln, a webbased tool for the creation of structure-based alignments of eukaryotic SECIS elements. Bioinformatics, 25, 674-675
-
(2009)
Bioinformatics
, vol.25
, pp. 674-675
-
-
Chapple, C.E.1
Guigo, R.2
Krol, A.3
-
14
-
-
77951973386
-
In silico identification of the sea squirt selenoproteome
-
Jiang,L., Liu,Q. and Ni,J. (2010) In silico identification of the sea squirt selenoproteome. BMC Genomics, 11, 289
-
(2010)
BMC Genomics
, vol.11
, pp. 289
-
-
Jiang, L.1
Liu, Q.2
Ni, J.3
-
15
-
-
77958475366
-
Selenoprofiles: Profile-based scanning of eukaryotic genome sequences for selenoprotein genes
-
Mariotti,M. and Guigo,R. (2010) Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes. Bioinformatics, 26, 2656-2663
-
(2010)
Bioinformatics
, vol.26
, pp. 2656-2663
-
-
Mariotti, M.1
Guigo, R.2
-
16
-
-
79952725430
-
Niche of harmful alga aureococcus anophagefferens revealed through ecogenomics
-
Gobler,C.J., Berry,D.L., Dyhrman,S.T., Wilhelm,S.W., Salamov,A., Lobanov,A.V., Zhang,Y., Collier,J.L., Wurch,L.L., Kustka,A.B. et al. (2011) Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proc. Natl Acad. Sci. USA, 108, 4352-4357
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 4352-4357
-
-
Gobler, C.J.1
Berry, D.L.2
Dyhrman, S.T.3
Wilhelm, S.W.4
Salamov, A.5
Lobanov, A.V.6
Zhang, Y.7
Collier, J.L.8
Wurch, L.L.9
Kustka, A.B.10
-
17
-
-
84865609772
-
Evolution of selenoproteins in the metazoan
-
Jiang,L., Ni,J. and Liu,Q. (2012) Evolution of selenoproteins in the metazoan. BMC Genomics, 13, 446
-
(2012)
BMC Genomics
, vol.13
, pp. 446
-
-
Jiang, L.1
Ni, J.2
Liu, Q.3
-
18
-
-
0036703297
-
Evolutionarily different RNA motifs and RNAprotein complexes to achieve selenoprotein synthesis
-
Krol,A. (2002) Evolutionarily different RNA motifs and RNAprotein complexes to achieve selenoprotein synthesis. Biochimie, 84, 765-774
-
(2002)
Biochimie
, vol.84
, pp. 765-774
-
-
Krol, A.1
-
19
-
-
0032943632
-
Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes
-
Grundner-Culemann,E., Martin,G.W., Harney,J.W. and Berry,M.J. (1999) Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes. RNA, 5, 625-635
-
(1999)
RNA
, vol.5
, pp. 625-635
-
-
Grundner-Culemann, E.1
Martin, G.W.2
Harney, J.W.3
Berry, M.J.4
-
20
-
-
0029832601
-
Selenocysteine incorporation in eukaryotes: Insights into mechanism and efficiency from sequence, structure, and spacing proximity studies of the type 1 deiodinase SECIS element
-
Martin,G.W., Harney,J.W. and Berry,M.J. (1996) Selenocysteine incorporation in eukaryotes: insights into mechanism and efficiency from sequence, structure, and spacing proximity studies of the type 1 deiodinase SECIS element. RNA, 2, 171-182
-
(1996)
RNA
, vol.2
, pp. 171-182
-
-
Martin, G.W.1
Harney, J.W.2
Berry, M.J.3
-
21
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker,I., Fontana,W., Stadler,P., Bonhoeffer,S., Tacker,M. and Schuster,P. (1994) Fast folding and comparison of RNA secondary structures. Monatshefte fur Chemie, 125, 167-188
-
(1994)
Monatshefte Fur Chemie
, vol.125
, pp. 167-188
-
-
Hofacker, I.1
Fontana, W.2
Stadler, P.3
Bonhoeffer, S.4
Tacker, M.5
Schuster, P.6
-
22
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker,I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
23
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki,E.P., Kolbe,D.L. and Eddy,S.R. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
24
-
-
13444309635
-
RALEE-rna alignment editor in emacs
-
Griffiths-Jones,S. (2005) RALEE-RNA ALignment editor in Emacs. Bioinformatics, 21, 257-259
-
(2005)
Bioinformatics
, vol.21
, pp. 257-259
-
-
Griffiths-Jones, S.1
-
25
-
-
0035834489
-
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
-
Gautheret,D. and Lambert,A. (2001) Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol., 313, 1003-1011
-
(2001)
J. Mol. Biol
, vol.313
, pp. 1003-1011
-
-
Gautheret, D.1
Lambert, A.2
-
26
-
-
0037099699
-
Selenoproteins and selenocysteine insertion system in the model plant cell system, chlamydomonas reinhardtii
-
Novoselov,S., Rao,M., Onoshko,N., Zhi,H., Kryukov,G., Xiang,Y., Weeks,D., Hatfield,D. and Gladyshev,V. (2002) Selenoproteins and selenocysteine insertion system in the model plant cell system, Chlamydomonas reinhardtii. EMBO J., 21, 3681
-
(2002)
EMBO J
, vol.21
, pp. 3681
-
-
Novoselov, S.1
Rao, M.2
Onoshko, N.3
Zhi, H.4
Kryukov, G.5
Xiang, Y.6
Weeks, D.7
Hatfield, D.8
Gladyshev, V.9
-
27
-
-
34249950755
-
A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells
-
Novoselov,S., Lobanov,A., Hua,D., Kasaikina,M., Hatfield,D. and Gladyshev,V. (2007) A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells. Proc. Natl Acad. Sci. USA, 104, 7857-7862
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 7857-7862
-
-
Novoselov, S.1
Lobanov, A.2
Hua, D.3
Kasaikina, M.4
Hatfield, D.5
Gladyshev, V.6
-
28
-
-
32644450829
-
The plasmodium selenoproteome
-
Lobanov,A., Delgado,C., Rahlfs,S., Novoselov,S., Kryukov,G., Gromer,S., Hatfield,D., Becker,K. and Gladyshev,V. (2006) The plasmodium selenoproteome. Nucleic Acids Res., 34, 496
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 496
-
-
Lobanov, A.1
Delgado, C.2
Rahlfs, S.3
Novoselov, S.4
Kryukov, G.5
Gromer, S.6
Hatfield, D.7
Becker, K.8
Gladyshev, V.9
-
29
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul,S., Madden,T., Schaffer,A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
30
-
-
33846635882
-
High-throughput identification of catalytic redox-active cysteine residues
-
Fomenko,D.E., Xing,W., Adair,B.M., Thomas,D.J. and Gladyshev,V.N. (2007) High-throughput identification of catalytic redox-active cysteine residues. Science, 315, 387-389
-
(2007)
Science
, vol.315
, pp. 387-389
-
-
Fomenko, D.E.1
Xing, W.2
Adair, B.M.3
Thomas, D.J.4
Gladyshev, V.N.5
-
31
-
-
83255176084
-
Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes
-
Fomenko,D.E. and Gladyshev,V.N. (2012) Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes. Antioxidants Redox Signal., 16, 193-201
-
(2012)
Antioxidants Redox Signal
, vol.16
, pp. 193-201
-
-
Fomenko, D.E.1
Gladyshev, V.N.2
-
32
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater,G.S. and and Birney,E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics, 6, 31
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
33
-
-
84880917571
-
The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens
-
Gobler,C.J., Lobanov,A.V., Tang,Y.Z., Turanov,A.A., Zhang,Y., Doblin,M., Taylor,G.T., San udoWilhelmy,S.A., Grigoriev,I.V. and Gladyshev,V.N. (2013) The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens. ISME J., 7, 1333-1343
-
(2013)
ISME J
, vol.7
, pp. 1333-1343
-
-
Gobler, C.J.1
Lobanov, A.V.2
Tang, Y.Z.3
Turanov, A.A.4
Zhang, Y.5
Doblin, M.6
Taylor, G.T.7
Sanudowilhelmy, S.A.8
Grigoriev, I.V.9
Gladyshev, V.N.10
|