메뉴 건너뛰기




Volumn 41, Issue 15, 2013, Pages

SECISearch3 and Seblastian: New tools for prediction of SECIS elements and selenoproteins

Author keywords

[No Author keywords available]

Indexed keywords

SELENOCYSTEINE; SELENOPROTEIN;

EID: 84883482725     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt550     Document Type: Article
Times cited : (68)

References (33)
  • 1
    • 25144503860 scopus 로고    scopus 로고
    • Selenoprotein synthesis: A unique translational mechanism used by a diverse family of proteins
    • Hoffmann,P.R. and Berry,M.J. (2005) Selenoprotein synthesis: a unique translational mechanism used by a diverse family of proteins. Thyroid, 15, 769-775
    • (2005) Thyroid , vol.15 , pp. 769-775
    • Hoffmann, P.R.1    Berry, M.J.2
  • 2
    • 72649106932 scopus 로고    scopus 로고
    • The selenium to selenoprotein pathway in eukaryotes: More molecular partners than anticipated
    • Allmang,C., Wurth,L. and Krol,A. (2009) The selenium to selenoprotein pathway in eukaryotes: more molecular partners than anticipated. Biochim. Biophys. Acta, 1790, 1415-1423
    • (2009) Biochim. Biophys. Acta , vol.1790 , pp. 1415-1423
    • Allmang, C.1    Wurth, L.2    Krol, A.3
  • 3
    • 33751098548 scopus 로고    scopus 로고
    • Selenocysteine incorporation machinery and the role of selenoproteins in development and health
    • Hatfield,D., Carlson,B., Xu,X., Mix,H. and Gladyshev,V. (2006) Selenocysteine incorporation machinery and the role of selenoproteins in development and health. Prog. Nucleic Acid Res. Mol. Biol., 81, 97-142
    • (2006) Prog. Nucleic Acid Res. Mol. Biol , vol.81 , pp. 97-142
    • Hatfield, D.1    Carlson, B.2    Xu, X.3    Mix, H.4    Gladyshev, V.5
  • 4
    • 45549108749 scopus 로고    scopus 로고
    • Eukaryotic selenoprotein synthesis: Mechanistic insight incorporating new factors and new functions for old factors
    • Squires,J. and Berry,M. (2008) Eukaryotic selenoprotein synthesis: mechanistic insight incorporating new factors and new functions for old factors. IUBMB Life, 60, 232-235
    • (2008) IUBMB Life , vol.60 , pp. 232-235
    • Squires, J.1    Berry, M.2
  • 5
    • 1642527890 scopus 로고    scopus 로고
    • Finding needles in a haystack in silico identification of eukaryotic selenoprotein genes
    • Driscoll,D.M. and Chavatte,L. (2004) Finding needles in a haystack. In silico identification of eukaryotic selenoprotein genes. EMBO Rep., 5, 140-141
    • (2004) EMBO Rep , vol.5 , pp. 140-141
    • Driscoll, D.M.1    Chavatte, L.2
  • 6
    • 0033607529 scopus 로고    scopus 로고
    • New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements
    • Kryukov,G.V., Kryukov,V.M. and Gladyshev,V.N. (1999) New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements. J. Biol. Chem., 274, 33888-33897
    • (1999) J. Biol. Chem , vol.274 , pp. 33888-33897
    • Kryukov, G.V.1    Kryukov, V.M.2    Gladyshev, V.N.3
  • 7
    • 0033621335 scopus 로고    scopus 로고
    • Novel selenoproteins identified in silico andin vivo by using a conserved rna structural motif
    • Lescure,A., Gautheret,D., Carbon,P. and Krol,A. (1999) Novel selenoproteins identified in silico andin Vivo by using a conserved RNA structural motif. J. Biol. Chem., 274, 38147
    • (1999) J. Biol. Chem , vol.274 , pp. 38147
    • Lescure, A.1    Gautheret, D.2    Carbon, P.3    Krol, A.4
  • 10
    • 2942546160 scopus 로고    scopus 로고
    • The prokaryotic selenoproteome
    • Kryukov,G. and Gladyshev,V. (2004) The prokaryotic selenoproteome. EMBO Rep., 5, 538
    • (2004) EMBO Rep , vol.5 , pp. 538
    • Kryukov, G.1    Gladyshev, V.2
  • 12
    • 67649635453 scopus 로고    scopus 로고
    • A method for identification of selenoprotein genes in archaeal genomes
    • Li,M., Huang,Y. and Xiao,Y. (2009) A method for identification of selenoprotein genes in archaeal genomes. Genomics Proteomics Bioinformatics, 7, 62-70
    • (2009) Genomics Proteomics Bioinformatics , vol.7 , pp. 62-70
    • Li, M.1    Huang, Y.2    Xiao, Y.3
  • 13
    • 61449255521 scopus 로고    scopus 로고
    • SECISaln, a webbased tool for the creation of structure-based alignments of eukaryotic SECIS elements
    • Chapple,C.E., Guigo,R. and Krol,A. (2009) SECISaln, a webbased tool for the creation of structure-based alignments of eukaryotic SECIS elements. Bioinformatics, 25, 674-675
    • (2009) Bioinformatics , vol.25 , pp. 674-675
    • Chapple, C.E.1    Guigo, R.2    Krol, A.3
  • 14
    • 77951973386 scopus 로고    scopus 로고
    • In silico identification of the sea squirt selenoproteome
    • Jiang,L., Liu,Q. and Ni,J. (2010) In silico identification of the sea squirt selenoproteome. BMC Genomics, 11, 289
    • (2010) BMC Genomics , vol.11 , pp. 289
    • Jiang, L.1    Liu, Q.2    Ni, J.3
  • 15
    • 77958475366 scopus 로고    scopus 로고
    • Selenoprofiles: Profile-based scanning of eukaryotic genome sequences for selenoprotein genes
    • Mariotti,M. and Guigo,R. (2010) Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes. Bioinformatics, 26, 2656-2663
    • (2010) Bioinformatics , vol.26 , pp. 2656-2663
    • Mariotti, M.1    Guigo, R.2
  • 17
    • 84865609772 scopus 로고    scopus 로고
    • Evolution of selenoproteins in the metazoan
    • Jiang,L., Ni,J. and Liu,Q. (2012) Evolution of selenoproteins in the metazoan. BMC Genomics, 13, 446
    • (2012) BMC Genomics , vol.13 , pp. 446
    • Jiang, L.1    Ni, J.2    Liu, Q.3
  • 18
    • 0036703297 scopus 로고    scopus 로고
    • Evolutionarily different RNA motifs and RNAprotein complexes to achieve selenoprotein synthesis
    • Krol,A. (2002) Evolutionarily different RNA motifs and RNAprotein complexes to achieve selenoprotein synthesis. Biochimie, 84, 765-774
    • (2002) Biochimie , vol.84 , pp. 765-774
    • Krol, A.1
  • 19
    • 0032943632 scopus 로고    scopus 로고
    • Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes
    • Grundner-Culemann,E., Martin,G.W., Harney,J.W. and Berry,M.J. (1999) Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes. RNA, 5, 625-635
    • (1999) RNA , vol.5 , pp. 625-635
    • Grundner-Culemann, E.1    Martin, G.W.2    Harney, J.W.3    Berry, M.J.4
  • 20
    • 0029832601 scopus 로고    scopus 로고
    • Selenocysteine incorporation in eukaryotes: Insights into mechanism and efficiency from sequence, structure, and spacing proximity studies of the type 1 deiodinase SECIS element
    • Martin,G.W., Harney,J.W. and Berry,M.J. (1996) Selenocysteine incorporation in eukaryotes: insights into mechanism and efficiency from sequence, structure, and spacing proximity studies of the type 1 deiodinase SECIS element. RNA, 2, 171-182
    • (1996) RNA , vol.2 , pp. 171-182
    • Martin, G.W.1    Harney, J.W.2    Berry, M.J.3
  • 22
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker,I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 23
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki,E.P., Kolbe,D.L. and Eddy,S.R. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 24
    • 13444309635 scopus 로고    scopus 로고
    • RALEE-rna alignment editor in emacs
    • Griffiths-Jones,S. (2005) RALEE-RNA ALignment editor in Emacs. Bioinformatics, 21, 257-259
    • (2005) Bioinformatics , vol.21 , pp. 257-259
    • Griffiths-Jones, S.1
  • 25
    • 0035834489 scopus 로고    scopus 로고
    • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
    • Gautheret,D. and Lambert,A. (2001) Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol., 313, 1003-1011
    • (2001) J. Mol. Biol , vol.313 , pp. 1003-1011
    • Gautheret, D.1    Lambert, A.2
  • 26
    • 0037099699 scopus 로고    scopus 로고
    • Selenoproteins and selenocysteine insertion system in the model plant cell system, chlamydomonas reinhardtii
    • Novoselov,S., Rao,M., Onoshko,N., Zhi,H., Kryukov,G., Xiang,Y., Weeks,D., Hatfield,D. and Gladyshev,V. (2002) Selenoproteins and selenocysteine insertion system in the model plant cell system, Chlamydomonas reinhardtii. EMBO J., 21, 3681
    • (2002) EMBO J , vol.21 , pp. 3681
    • Novoselov, S.1    Rao, M.2    Onoshko, N.3    Zhi, H.4    Kryukov, G.5    Xiang, Y.6    Weeks, D.7    Hatfield, D.8    Gladyshev, V.9
  • 27
    • 34249950755 scopus 로고    scopus 로고
    • A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells
    • Novoselov,S., Lobanov,A., Hua,D., Kasaikina,M., Hatfield,D. and Gladyshev,V. (2007) A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells. Proc. Natl Acad. Sci. USA, 104, 7857-7862
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 7857-7862
    • Novoselov, S.1    Lobanov, A.2    Hua, D.3    Kasaikina, M.4    Hatfield, D.5    Gladyshev, V.6
  • 30
    • 33846635882 scopus 로고    scopus 로고
    • High-throughput identification of catalytic redox-active cysteine residues
    • Fomenko,D.E., Xing,W., Adair,B.M., Thomas,D.J. and Gladyshev,V.N. (2007) High-throughput identification of catalytic redox-active cysteine residues. Science, 315, 387-389
    • (2007) Science , vol.315 , pp. 387-389
    • Fomenko, D.E.1    Xing, W.2    Adair, B.M.3    Thomas, D.J.4    Gladyshev, V.N.5
  • 31
    • 83255176084 scopus 로고    scopus 로고
    • Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes
    • Fomenko,D.E. and Gladyshev,V.N. (2012) Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes. Antioxidants Redox Signal., 16, 193-201
    • (2012) Antioxidants Redox Signal , vol.16 , pp. 193-201
    • Fomenko, D.E.1    Gladyshev, V.N.2
  • 32
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater,G.S. and and Birney,E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics, 6, 31
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.