The Plasmodium selenoproteome

Nucleic Acids Research

Volumn 34, Issue 2, 2006, Pages 496-505

  Lobanov, Alexey V ^a   Delgado, Cesar ^a   Rahlfs, Stefan ^b   Novoselov, Sergey V ^a   Kryukov, Gregory V ^a   Gromer, Stephan ^c   Hatfield, Dolph L ^d   Becker, Katja ^b   Gladyshev, Vadim N ^a  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b JUSTUS LIEBIG UNIVERSITY   (Germany)

^c UNIVERSITY OF HEIDELBERG   (Germany)

^d NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIMALARIAL AGENT; PROTEOME; SELENIUM; SELENOPROTEIN;

APICOMPLEXA; ARTICLE; CONTROLLED STUDY; CRYPTOSPORIDIUM; GENE FUNCTION; GENE INSERTION; GENE INSERTION SEQUENCE; GENETIC CONSERVATION; MAMMAL CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN EXPRESSION; PROTEIN METABOLISM; PROTOZOON; RNA STRUCTURE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TOXOPLASMA;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; EVOLUTION, MOLECULAR; MALARIA; MICE; MOLECULAR SEQUENCE DATA; NIH 3T3 CELLS; PLASMODIUM; PLASMODIUM FALCIPARUM; PROTEOME; PROTOZOAN PROTEINS; REGULATORY SEQUENCES, RIBONUCLEIC ACID; RNA, TRANSFER, AMINO ACYL; SELENOCYSTEINE; SELENOPROTEINS; SEQUENCE ALIGNMENT;

ALGAE; ANIMALIA; APICOMPLEXA; CRYPTOSPORIDIUM; EUKARYOTA; MAMMALIA; PLASMODIUM (APICOMPLEXA); PLASMODIUM FALCIPARUM; PROTOZOA; TOXOPLASMA;

EID: 32644450829     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkj450     Document Type: Article

References (35)

1. Gardner,M.J., Hall,N., Fung,E., White,O., Berriman,M., Hyman,R.W., Carlton,J.M., Pain,A., Nelson,K.E., Bowman,S. et al. (2002) Genome sequence of the human malaria parasite Plasmodium falciparum. Nature, 419, 498-511.
2. Carlton,J.M., Angiuoli,S.V., Suh,B.B., Kooij,T.W., Pertea,M., Silva,J.C., Ermolaeva,M.D., Allen,J.E., Selengut,J.D., Koo,H.L. et al. (2002) Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature, 419, 512-519.
3. Abrahamsen,M.S., Templeton,T.J., Enomoto,S., Abrahante,J.E., Zhu,G., Lancto,C.A., Deng,M., Liu,C., Widmer,G., Tzipori,S. et al. (2004) Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Science, 304, 441-445.
4. Kim,K. and Weiss,L. (2004) Toxoplasma gondii: The model apicomplexan. Int. J. Parasitol., 34, 423-432.
5. Xu,P., Widmer,G., Wang,Y., Ozaki,L.S., Alves,J.M., Serrano,M.G., Puiu,D., Manque,P., Akiyoshi,D., Mackey,A.J. et al. (2004) The genome of Cryptosporidium hominis. Nature, 431, 1107-1112.
6. Templeton,T.J., Iyer,L.M., Anantharaman,V., Enomoto,S., Abrahante,J.E., Subramanian,G.M., Hoffman,S.L., Abrahamsen,M.S. and Aravind,L. (2004) Comparative analysis of apicomplexa and genomic diversity in eukaryotes. Genome Res., 14, 1686-1695.
7. Aravind,L., Iyer,L.M., Wellems,T.E. and Miller,L.H. (2003) Plasmodium biology: Genomic gleanings. Cell, 115, 771-785.
8. Low,S.C. and Berry,M.J. (1996) Knowing when not to stop: Selenocysteine incorporation in eukaryotes. Trends Biochem. Sci., 21, 203-208.
9. Stadtman,T.C. (1996) Selenocysteine. Annu. Rev. Biochem., 65, 83-100.
10. Hatfield,D.L. and Gladyshev,V.N. (2002) How selenium has altered our understanding of the genetic code. Mol. Cell Biol., 22, 3565-3576.
11. Driscoll,D.M. and Copeland,P.R. (2003) Mechanism and regulation of selenoprotein synthesis. Annu. Rev. Nutr., 23, 17-40.
12. Chaudière,J. and Tappel,A.L. (1984) Interaction of gold(I) with the active site of selenium-glutathione peroxidase. J. Inorg. Biochem., 20, 313-325.
13. Gromer,S., Urig,S. and Becker,K. (2004) The thioredoxin system - from science to clinic. Med. Res. Rev., 24, 40-89.
14. Wilting,R., Schorling,S., Persson,B.C. and Böck,A. (1997) Selenoprotein synthesis in archaea: Identification of an mRNA element of Methanococcus jannaschii probably directing selenocysteine insertion. J. Mol. Biol., 266, 637-641.
15. Flohé,L., Andreesen,J.R., Brigelius-Flohé,R., Maiorino,M. and Ursini,F. (2000) Selenium, the element of the moon, in life on earth. IUBMB Life, 49, 411-420.
16. Castellano,S., Morozova,N., Morey,M., Berry,M.J., Serras,F., Corominas,M. and Guigo,R. (2001) In silico identification of novel selenoproteins in the Drosophila melanogaster genome. EMBO Rep., 2, 697-702.
17. Kryukov,G.V., Castellano,S., Novoselov,S.V., Lobanov,A.V., Zehtab,O., Guigo,R. and Gladyshev,V.N. (2003) Characterization of mammalian selenoproteomes. Science, 300, 1439-1443.
18. Kryukov,G.V. and Gladyshev,V.N. (2004) The prokaryotic selenoproteome. EMBO Rep., 5, 538-543.
19. Novoselov,S.V., Rao,M., Onoshko,N.V., Zhi,H., Kryukov,G.V., Xiang,Y., Weeks,D.P., Hatfield,D.L. and Gladyshev,V.N. (2002) Selenoproteins and selenocysteine insertion system in the model plant cell system, Chlamydomonas reinhardtii. EMBO J., 21, 3681-3693.
20. Fu,L.H., Wang,X.F., Eyal,Y., She,Y.M., Donald,L.J., Standing,K.G. and Ben-Hayyim,G. (2002) A selenoprotein in the plant kingdom. Mass spectrometry confirms that an opal codon (UGA) encodes selenocysteine in Chlamydomonas reinhardtii glutathione peroxidase. J. Biol. Chem., 277, 25983-25991.
21. Mourier,T., Pain,A., Barrell,B. and Griffiths-Jones,S. (2005) A selenocysteine tRNA and SECIS element in Plasmodium falciparum. RNA, 11, 119-122.
22. Kryukov,G.V., Kryukov,V.M. and Gladyshev,V.N. (1999) New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements. J. Biol. Chem., 274, 33888-33897.
23. Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
24. Laslett,D. and Canback,B. (2004) ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res., 32, 11-16.
25. Bendtsen,J.D., Nielsen,H., von Heijne,G. and Brunak,S. (2004) Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol., 340, 783-795.
26. Saitou,N. and Nei,M. (1987) The Neighbor-Joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
27. Castellano,S., Novoselov,S.V., Kryukov,G.V., Lescure,A., Blanco,E., Krol,A., Gladyshev,V.N. and Guigo,R. (2004) Reconsidering the evolution of eukaryotic selenoproteins: A novel nonmammalian family with scattered phylogenetic distribution. EMBO Rep., 5, 71-77.
28. Obata,T. and Shiraiwa,Y. (2005) A novel eukaryotic selenoprotein in the haptophyte alga Emiliania huxleyi. J. Biol. Chem., 280, 18462-18468.
29. Walczak,R., Westhof,E., Carbon,P. and Krol,A. (1996) A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs. RNA, 2, 367-379.
30. Grundner-Culemann,E., Martin,G.W.,III, Harney,W. and Berry,M.J. (1999) Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes. RNA, 5, 625-635.
31. Zuegge,J., Ralph,S., Schmuker,M., McFadden,G.I. and Schneider,G. (2001) Deciphering apicoplast targeting signals - feature extraction from nuclear-encoded precursors of Plasmodium falciparum apicoplast proteins. Gene, 280, 19-26.
32. Fagegaltier,D., Hubert,N., Yamada,K., Mizutani,T., Carbon,P. and Krol,A. (2000) Characterization of mSelB, a novel mammalian elongation factor for selenoprotein translation. EMBO J., 19, 4796-4805.
33. Tujebajeva,R.M., Copeland,P.R., Xu,X.M., Carlson,B.A., Harney,J.W., Driscoll,D.M., Hatfield,D.L. and Berry,M.J. (2000) Decoding apparatus for eukaryotic selenocysteine insertion. EMBO Rep., 1, 158-163.
34. Shrimali,R.K., Lobanov,A.V., Xu,X.M., Rao,M., Carlson,B.A., Mahadeo,D.C., Parent,C.A., Gladyshev,V.N. and Hatfield,D.L. (2005) Selenocysteine tRNA identification in the model organisms Dictyostelium discoideum and Tetrahymena thermophila. Biochem. Biophys. Res. Commun., 329, 147-151.
35. Becker,K., Tilley,L., Vennerstrom,J.L., Roberts,D., Rogerson,S. and Ginsburg,H. (2004) Oxidative stress in malaria parasite-infected erythrocytes: Host-parasite interactions. Int. J. Parasitol., 34, 163-189.