메뉴 건너뛰기




Volumn 29, Issue 18, 2013, Pages 2269-2276

Lnetwork: An efficient and effective method for constructing phylogenetic networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CLUSTER ANALYSIS; COMPUTER PROGRAM; PHYLOGENY; ARTICLE;

EID: 84883482702     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt378     Document Type: Article
Times cited : (19)

References (28)
  • 1
    • 38349167557 scopus 로고    scopus 로고
    • Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
    • Arenas,M. and Posada,D. (2007) Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography. BMC Bioinformatics, 8, 458.
    • (2007) BMC Bioinformatics , vol.8 , pp. 458
    • Arenas, M.1    Posada, D.2
  • 2
    • 59649102220 scopus 로고    scopus 로고
    • Metrics for phylogenetic networks I: Generalizations of the Robinson-Foulds metric
    • Cardona,G. (2009) Metrics for phylogenetic networks I: Generalizations of the Robinson-Foulds metric. IEEE/ACM Trans. Comput. Biol. Bioinform., 6, 46-61.
    • (2009) IEEE/ ACM Trans. Comput. Biol. Bioinform. , vol.6 , pp. 46-61
    • Cardona, G.1
  • 3
    • 80053108302 scopus 로고    scopus 로고
    • Quantifying hybridization in realistic time
    • Collins,J. et al. (2011) Quantifying hybridization in realistic time. J. Comput. Biol., 18, 1305-1318.
    • (2011) J. Comput. Biol. , vol.18 , pp. 1305-1318
    • Collins, J.1
  • 4
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle,W.F. (1999) Phylogenetic classification and the universal tree. Science, 284, 2124-2128.
    • (1999) Science , vol.284 , pp. 2124-2128
    • Doolittle, W.F.1
  • 7
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson,D.H. and Bryant,D. (2006) Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol., 23, 254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 9
    • 79954427560 scopus 로고    scopus 로고
    • A survey of combinatorial methods for phylogenetic networks
    • Huson,D.H. and Scornavacca,C. (2010) A survey of combinatorial methods for phylogenetic networks. Genome Biol. Evol., 3, 23-35.
    • (2010) Genome Biol. Evol. , vol.3 , pp. 23-35
    • Huson, D.H.1    Scornavacca, C.2
  • 10
    • 84868007353 scopus 로고    scopus 로고
    • Dendroscope 3-An interactive viewer for rooted phylogenetic trees and networks
    • Huson,D.H. and Scornavacca,C. (2012) Dendroscope 3-An interactive viewer for rooted phylogenetic trees and networks. Syst. Biol., 61, 1061-1067.
    • (2012) Syst. Biol. , vol.61 , pp. 1061-1067
    • Huson, D.H.1    Scornavacca, C.2
  • 11
    • 14744273424 scopus 로고    scopus 로고
    • Phylogenetic super-networks from partial trees
    • Huson,D.H. et al. (2004) Phylogenetic super-networks from partial trees. IEEE/ ACM Trans. Comput. Biol. Bioinform., 1, 151-158.
    • (2004) IEEE/ ACM Trans. Comput. Biol. Bioinform. , vol.1 , pp. 151-158
    • Huson, D.H.1
  • 12
    • 66349108852 scopus 로고    scopus 로고
    • Computing galled networks from real data
    • Huson,D.H. et al. (2009) Computing galled networks from real data. Bioinformatics, 25, i85-i93.
    • (2009) Bioinformatics , vol.25
    • Huson, D.H.1
  • 14
    • 77952300042 scopus 로고    scopus 로고
    • Intragenic recombination events and evidence for hybrid speciation in Nicotiana (Solanaceae)
    • Kelly,L.J. et al. (2010) Intragenic recombination events and evidence for hybrid speciation in Nicotiana (Solanaceae). Mol. Biol. Evol., 27, 781-799.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 781-799
    • Kelly, L.J.1
  • 15
    • 17044416291 scopus 로고    scopus 로고
    • Reconstructing patterns of reticulate evolution in plants
    • Linder,C.R. and Rieseberg,L.H. (2004) Reconstructing patterns of reticulate evolution in plants. Am. J. Bot., 91, 1700-1708.
    • (2004) Am. J. Bot. , vol.91 , pp. 1700-1708
    • Linder, C.R.1    Rieseberg, L.H.2
  • 16
    • 33745514204 scopus 로고    scopus 로고
    • Network (reticulate) evolution: Biology, models, and algorithms
    • Hawaii, USA
    • Linder,C.R. et al. (2004) Network (reticulate) evolution: Biology, models, and algorithms. In: Ninth Pacific Symposium on Biocomputing. Hawaii, USA.
    • (2004) Ninth Pacific Symposium on Biocomputing
    • Linder, C.R.1
  • 18
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison,W.P. (1997) Gene trees in species trees. Syst. Biol., 46, 523-536.
    • (1997) Syst. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 21
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson,D.F. and Foulds,L.R. (1981) Comparison of phylogenetic trees. Math. Biosci., 53, 131-147.
    • (1981) Math. Biosci. , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 22
    • 83555176318 scopus 로고    scopus 로고
    • Speciation within genomic networks: A case study based on Steatocranus cichlids of the lower Congo rapids
    • Schwarzer,J. et al. (2011) Speciation within genomic networks: A case study based on Steatocranus cichlids of the lower Congo rapids. J. Evol. Biol., 25, 138-148.
    • (2011) J. Evol. Biol. , vol.25 , pp. 138-148
    • Schwarzer, J.1
  • 23
    • 15944363058 scopus 로고    scopus 로고
    • Constructing minimal ancestral recombination graphs
    • Song,Y.S. and Hein,J. (2005) Constructing minimal ancestral recombination graphs. J. Comp. Biol., 12, 147-169.
    • (2005) J. Comp. Biol. , vol.12 , pp. 147-169
    • Song, Y.S.1    Hein, J.2
  • 24
    • 77954178859 scopus 로고    scopus 로고
    • Phylogenetic networks do not need to be complex: Using fewer reticulations to represent conflicting clusters
    • van Iersel,L. et al. (2010) Phylogenetic networks do not need to be complex: Using fewer reticulations to represent conflicting clusters. Bioinformatics, 26, i124-i131.
    • (2010) Bioinformatics , vol.26
    • Van Iersel, L.1
  • 25
    • 84865313607 scopus 로고    scopus 로고
    • Indehiscent sporangia enable the accumulation of local fern diversity at the Qinghai-Tibetan Plateau
    • Wang,L. et al. (2012) Indehiscent sporangia enable the accumulation of local fern diversity at the Qinghai-Tibetan Plateau. BMC Evol. Biol., 12, 158-169.
    • (2012) BMC Evol. Biol. , vol.12 , pp. 158-169
    • Wang, L.1
  • 26
    • 58149239791 scopus 로고    scopus 로고
    • Filtered Z-closure supernetworks for extracting and visualizing recurrent signal from incongruent gene trees
    • Whitfield,J.B. et al. (2008) Filtered Z-closure supernetworks for extracting and visualizing recurrent signal from incongruent gene trees. Syst. Biol., 57, 939-947.
    • (2008) Syst. Biol. , vol.57 , pp. 939-947
    • Whitfield, J.B.1
  • 27
    • 44849122679 scopus 로고    scopus 로고
    • A comparison of phylogenetic network methods using computer simulation
    • Woolley,S.M. et al. (2008) A comparison of phylogenetic network methods using computer simulation. Plos One, 3, e1913.
    • (2008) Plos One , vol.3
    • Woolley, S.M.1
  • 28
    • 77954180873 scopus 로고    scopus 로고
    • Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees
    • Wu,Y. (2010) Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees. Bioinformatics, 26, i140-i148.
    • (2010) Bioinformatics , vol.26
    • Wu, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.