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Volumn 3500, Issue , 2005, Pages 217-232

A fundamental decomposition theory for phylogenetic networks and incompatible characters

Author keywords

Ancestral Recombination Graph; Gene Conversion; Molecular Evolution; Perfect Phylogeny; Phylogenetic Networks; Recombination; SNP

Indexed keywords

CHROMOSOMES; GENE TRANSFER; GENETIC ALGORITHMS; PHYSIOLOGICAL MODELS; ALGORITHMS; EVOLUTIONARY ALGORITHMS; GENETIC ENGINEERING; GRAPH THEORY; OPTIMIZATION; PROBLEM SOLVING;

EID: 26444594969     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11415770_17     Document Type: Conference Paper
Times cited : (53)

References (25)
  • 2
    • 0031834225 scopus 로고    scopus 로고
    • It's raining SNP's, hallelujah?
    • A. Chakravarti. It's raining SNP's, hallelujah? Nature Genetics, 19:216-217, 1998.
    • (1998) Nature Genetics , vol.19 , pp. 216-217
    • Chakravarti, A.1
  • 4
    • 84987049379 scopus 로고
    • Efficient algorithms for inferring evolutionary history
    • D. Gusfield. Efficient algorithms for inferring evolutionary history. Networks, 21:19-28, 1991.
    • (1991) Networks , vol.21 , pp. 19-28
    • Gusfield, D.1
  • 6
    • 10044231116 scopus 로고    scopus 로고
    • Optimal, efficient reconstruction of Root-Unknown phylogenetic networks with constrained recombination
    • Department of Computer Science, University of California, Davis, CA
    • D. Gusfield. Optimal, efficient reconstruction of Root-Unknown phylogenetic networks with constrained recombination. Technical report, Department of Computer Science, University of California, Davis, CA, 2004.
    • (2004) Technical Report
    • Gusfield, D.1
  • 7
    • 26444576130 scopus 로고    scopus 로고
    • On the decomposition optimality conjecture for phylogenetic networks
    • UC Davis, Department of Computer Science
    • D. Gusfield. On the decomposition optimality conjecture for phylogenetic networks. Technical report, UC Davis, Department of Computer Science, 2005.
    • (2005) Technical Report
    • Gusfield, D.1
  • 9
    • 3242876395 scopus 로고    scopus 로고
    • Optimal, efficient reconstruction of phylogenetic networks with constrained recombination
    • D. Gusfield, S. Eddhu, and C. Langley. Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. J. Bioinformatics and Computational Biology, 2(1):173-213, 2004.
    • (2004) J. Bioinformatics and Computational Biology , vol.2 , Issue.1 , pp. 173-213
    • Gusfield, D.1    Eddhu, S.2    Langley, C.3
  • 10
    • 15344341199 scopus 로고    scopus 로고
    • A new lower bound on the number of needed recombination nodes in both unrooted and rooted phylogenetic networks
    • Report UCD-ECS-06, University of California, Davis
    • D. Gusfield and D. Hickerson. A new lower bound on the number of needed recombination nodes in both unrooted and rooted phylogenetic networks. Report UCD-ECS-06. Technical report, University of California, Davis, 2004.
    • (2004) Technical Report
    • Gusfield, D.1    Hickerson, D.2
  • 11
    • 0025299784 scopus 로고
    • Reconstructing evolution of sequences subject to recombination using parsimony
    • J. Hein. Reconstructing evolution of sequences subject to recombination using parsimony. Math. Biosci, 98:185-200, 1990.
    • (1990) Math. Biosci , vol.98 , pp. 185-200
    • Hein, J.1
  • 12
    • 0027471670 scopus 로고
    • A heuristic method to reconstruct the history of sequences subject to recombination
    • J. Hein. A heuristic method to reconstruct the history of sequences subject to recombination. J. Mol. Evol., 36:396-405, 1993.
    • (1993) J. Mol. Evol. , vol.36 , pp. 396-405
    • Hein, J.1
  • 13
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • R. Hudson and N. Kaplan. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111:147-164, 1985.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.1    Kaplan, N.2
  • 14
    • 0039528958 scopus 로고    scopus 로고
    • Reconstructing a history of recombinations from a set of sequences
    • J. D. Kececioglu and D. Gusfield. Reconstructing a history of recombinations from a set of sequences. Discrete Applied Math., 88:239-260, 1998.
    • (1998) Discrete Applied Math. , vol.88 , pp. 239-260
    • Kececioglu, J.D.1    Gusfield, D.2
  • 16
    • 0037279717 scopus 로고    scopus 로고
    • Bounds on the minimum number of recombination events in a sample history
    • S. R. Myers and R. C. Griffiths. Bounds on the minimum number of recombination events in a sample history. Genetics, 163:375-394, 2003.
    • (2003) Genetics , vol.163 , pp. 375-394
    • Myers, S.R.1    Griffiths, R.C.2
  • 20
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: Trees grafting into networks
    • D. Posada and K. Crandall. Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology and Evolution, 16:37-45, 2001.
    • (2001) Trends in Ecology and Evolution , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.2
  • 22
    • 26444560788 scopus 로고    scopus 로고
    • Personal Communication
    • Y. Song. Personal Communication.
    • Song, Y.1
  • 23
    • 2442543323 scopus 로고    scopus 로고
    • Parsimonious reconstruction of sequence evolution and haplotype blocks: Finding the minmimum number of recombination events
    • Berlin, Germany. Springer-Verlag LNCS
    • Y. Song and J. Hein. Parsimonious reconstruction of sequence evolution and haplotype blocks: Finding the minmimum number of recombination events. In Proc. of 2003 Workshop on Algorithms in Bioinformatics, Berlin, Germany, 2003. Springer-Verlag LNCS.
    • (2003) Proc. of 2003 Workshop on Algorithms in Bioinformatics
    • Song, Y.1    Hein, J.2
  • 24
    • 16544370982 scopus 로고    scopus 로고
    • On the minimum number of recombination events in the evolutionary history of DNA sequences
    • Y. Song and J. Hein. On the minimum number of recombination events in the evolutionary history of DNA sequences. Journal of Mathematical Biology, 48:160-186, 2004.
    • (2004) Journal of Mathematical Biology , vol.48 , pp. 160-186
    • Song, Y.1    Hein, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.