-
1
-
-
80054754012
-
The large-scale distribution of somatic mutations in cancer genomes
-
A. Hodgkinson, Y. Chen, and A. Eyre-Walker, "The large-scale distribution of somatic mutations in cancer genomes, " Human Mutation, vol. 33, no. 1, pp. 136-143, 2012.
-
(2012)
Human Mutation
, vol.33
, Issue.1
, pp. 136-143
-
-
Hodgkinson, A.1
Chen, Y.2
Eyre-Walker, A.3
-
2
-
-
74449093973
-
A comprehensive catalogue of somatic mutations from a human cancer genome
-
E. Pleasance, R. Cheetham, P. Stephens, D. McBride, S. Humphray, C. Greenman, I. Varela, M. Lin, G. Ordónez, and G. Bignell et al., "A comprehensive catalogue of somatic mutations from a human cancer genome, " Nature, vol. 463, no. 7278, pp. 191-196, 2009.
-
(2009)
Nature
, vol.463
, Issue.7278
, pp. 191-196
-
-
Pleasance, E.1
Cheetham, R.2
Stephens, P.3
McBride, D.4
Humphray, S.5
Greenman, C.6
Varela, I.7
Lin, M.8
Ordónez, G.9
Bignell, G.10
-
3
-
-
54549094903
-
Somatic mutations affect key pathways in lung adenocarcinoma
-
L. Ding, G. Getz, D. Wheeler, E. Mardis, M. McLellan, K. Cibulskis, C. Sougnez, H. Greulich, D. Muzny, and M. Morgan et al., "Somatic mutations affect key pathways in lung adenocarcinoma, " Nature, vol. 455, no. 7216, pp. 1069-1075, 2008.
-
(2008)
Nature
, vol.455
, Issue.7216
, pp. 1069-1075
-
-
Ding, L.1
Getz, G.2
Wheeler, D.3
Mardis, E.4
McLellan, M.5
Cibulskis, K.6
Sougnez, C.7
Greulich, H.8
Muzny, D.9
Morgan, M.10
-
4
-
-
84865684161
-
Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma
-
M. Krauthammer, Y. Kong, B. Ha, P. Evans, A. Bacchiocchi, J. Mc-Cusker, E. Cheng, M. Davis, G. Goh, and M. Choi et al., "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma, " Nature Genetics, 2012.
-
(2012)
Nature Genetics
-
-
Krauthammer, M.1
Kong, Y.2
Ha, B.3
Evans, P.4
Bacchiocchi, A.5
Mc-Cusker, J.6
Cheng, E.7
Davis, M.8
Goh, G.9
Choi, M.10
-
5
-
-
0035173378
-
Dbsnp: The NCBI database of genetic variation
-
S. Sherry, M.Ward, M. Kholodov, J. Baker, L. Phan, E. Smigielski, and K. Sirotkin, "dbsnp: The NCBI database of genetic variation, " Nucleic Acids Res., vol. 29, no. 1, pp. 308-311, 2001.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.1
, pp. 308-311
-
-
Sherry, S.1
Ward, M.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.6
Sirotkin, K.7
-
6
-
-
63449141981
-
Human mutation rate associated with DNA replication timing
-
J. Stamatoyannopoulos, I. Adzhubei, R. Thurman, G. Kryukov, S. Mirkin, and S. Sunyaev, "Human mutation rate associated with DNA replication timing, " Nature Genetics, vol. 41, no. 4, pp. 393-395, 2009.
-
(2009)
Nature Genetics
, vol.41
, Issue.4
, pp. 393-395
-
-
Stamatoyannopoulos, J.1
Adzhubei, I.2
Thurman, R.3
Kryukov, G.4
Mirkin, S.5
Sunyaev, S.6
-
7
-
-
76349123622
-
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
-
R. Hansen, S. Thomas, R. Sandstrom, T. Canfield, R. Thurman, M. Weaver, M. Dorschner, S. Gartler, and J. Stamatoyannopoulos, "Sequencing newly replicated DNA reveals widespread plasticity in human replication timing, " Proc. Natl. Acad. Sci., vol. 107, no. 1, pp. 139-144, 2010.
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, Issue.1
, pp. 139-144
-
-
Hansen, R.1
Thomas, S.2
Sandstrom, R.3
Canfield, T.4
Thurman, R.5
Weaver, M.6
Dorschner, M.7
Gartler, S.8
Stamatoyannopoulos, J.9
-
8
-
-
36549027355
-
Gsea-p: A desktop application for gene set enrichment analysis
-
A. Subramanian, H. Kuehn, J. Gould, P. Tamayo, and J. Mesirov, "Gsea-p: A desktop application for gene set enrichment analysis, " Bioinformatics, vol. 23, no. 23, pp. 3251-3253, 2007.
-
(2007)
Bioinformatics
, vol.23
, Issue.23
, pp. 3251-3253
-
-
Subramanian, A.1
Kuehn, H.2
Gould, J.3
Tamayo, P.4
Mesirov, J.5
-
9
-
-
58149193222
-
Human protein reference database-2009 update
-
T. K. Prasad, R. Goel, K. Kandasamy, S. Keerthikumar, S. Kumar, S. Mathivanan, D. Telikicherla, R. Raju, B. Shafreen, and A. Venugopal et al., "Human protein reference database-2009 update, " Nucleic Acids Res., vol. 37, no. suppl 1, pp. D767-D772, 2009.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.SUPPL. 1
-
-
Prasad, T.K.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
10
-
-
77949354563
-
PLX4032, a selective BRAFV600E kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAFWT melanoma cells
-
R. Halaban, W. Zhang, A. Bacchiocchi, E. Cheng, F. Parisi, S. Ariyan, M. Krauthammer, J.McCusker, Y. Kluger, and M. Sznol, "PLX4032, a selective BRAFV600E kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAFWT melanoma cells, " Pigment CellMelanoma Res., vol. 23, no. 2, pp. 190-200, 2010.
-
(2010)
Pigment CellMelanoma Res.
, vol.23
, Issue.2
, pp. 190-200
-
-
Halaban, R.1
Zhang, W.2
Bacchiocchi, A.3
Cheng, E.4
Parisi, F.5
Ariyan, S.6
Krauthammer, M.7
Mccusker, J.8
Kluger, Y.9
Sznol, M.10
-
11
-
-
79960698975
-
Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
-
Y. Kong, "Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies, " Genomics, vol. 98, no. 2, p. 152, 2011.
-
(2011)
Genomics
, vol.98
, Issue.2
, pp. 152
-
-
Kong, Y.1
-
12
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
H. Li and R. Durbin, "Fast and accurate short read alignment with burrows-wheeler transform, " Bioinformatics, vol. 25, no. 14, pp. 1754-1760, 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
13
-
-
68549104404
-
The sequence alignment/ map format and samtools
-
H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, and R. Durbin et al., "The sequence alignment/ map format and samtools, " Bioinformatics, vol. 25, no. 16, pp. 2078-2079, 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
14
-
-
79551577249
-
MU2Areconciling the genome and transcriptome to determine the effects of base substitutions
-
V. Garla, Y. Kong, S. Szpakowski, and M. Krauthammer, "MU2Areconciling the genome and transcriptome to determine the effects of base substitutions, " Bioinformatics, vol. 27, no. 3, pp. 416-418, 2011.
-
(2011)
Bioinformatics
, vol.27
, Issue.3
, pp. 416-418
-
-
Garla, V.1
Kong, Y.2
Szpakowski, S.3
Krauthammer, M.4
-
16
-
-
84887212492
-
Integrative analysis of epigenetic modulation in melanoma cell response to decitabine: Clinical implications
-
R. Halaban, M. Krauthammer, M. Pelizzola, E. Cheng, D. Kovacs, M. Sznol, S. Ariyan, D. Narayan, A. Bacchiocchi, and A. Molinaro et al., "Integrative analysis of epigenetic modulation in melanoma cell response to decitabine: Clinical implications, " PLoS One, vol. 4, no. 2, p. e4563, 2009.
-
(2009)
PLoS One
, vol.4
, Issue.2
-
-
Halaban, R.1
Krauthammer, M.2
Pelizzola, M.3
Cheng, E.4
Kovacs, D.5
Sznol, M.6
Ariyan, S.7
Narayan, D.8
Bacchiocchi, A.9
Molinaro, A.10
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