Predictors and Consequences of Global DNA Methylation in Cord Blood and at Three Years

PLoS ONE

Volumn 8, Issue 9, 2013, Pages

  Herbstman, Julie B ^a   Wang, Shuang ^a   Perera, Frederica P ^a   Lederman, Sally A ^b   Vishnevetsky, Julia ^a   Rundle, Andrew G ^a   Hoepner, Lori A ^a   Qu, Lirong ^a   Tang, Deliang ^a  

^a Columbia University Mailman School of Public Health ^*  (United States)

^b NewYork Presbyterian Hospital   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ADULT; ARTICLE; BIRTH WEIGHT; BODY MASS; CHILD; CHILDBIRTH; COHORT ANALYSIS; DNA METHYLATION; FEMALE; GENETIC ASSOCIATION; HUMAN; IMMUNOASSAY; LONGITUDINAL STUDY; MALE; NORMAL HUMAN; PREDICTIVE VALIDITY; PREGNANCY; PRESCHOOL CHILD; UMBILICAL CORD BLOOD;

ADOLESCENT; ADULT; BODY MASS INDEX; CHILD, PRESCHOOL; DNA METHYLATION; FEMALE; FETAL BLOOD; HUMANS; PREGNANCY; YOUNG ADULT;

EID: 84883330101     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0072824     Document Type: Article

References (37)

1. Jirtle RL, Skinner MK, (2007) Environmental epigenomics and disease susceptibility. Nature reviews Genetics 8: 253-262.
2. Fazzari MJ, Greally JM, (2004) Epigenomics: beyond CpG islands. Nature reviews Genetics 5: 446-455.
3. Bollati V, Schwartz J, Wright R, Litonjua A, Tarantini L, et al. (2009) Decline in genomic DNA methylation through aging in a cohort of elderly subjects. Mech Ageing Dev 130: 234-239.
4. Aguilera O, Fernandez AF, Munoz A, Fraga MF, (2010) Epigenetics and environment: a complex relationship. Journal of applied physiology 109: 243-251.
5. Meaney MJ, (2010) Epigenetics and the biological definition of gene x environment interactions. Child development 81: 41-79.
6. Waterland RA, Michels KB, (2007) Epigenetic epidemiology of the developmental origins hypothesis. Annual review of nutrition 27: 363-388.
7. Bjornsson HT, Sigurdsson MI, Fallin MD, Irizarry RA, Aspelund T, et al. (2008) Intra-individual change over time in DNA methylation with familial clustering. JAMA 299: 2877-2883.
8. Wu HC, Wang Q, Delgado-Cruzata L, Santella RM, Terry MB, (2012) Genomic Methylation Changes Over Time in Peripheral Blood Mononuclear Cell DNA: Differences by Assay Type and Baseline Values. Cancer epidemiology, biomarkers & prevention: a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 21: 1314-1318.
9. Barker DJ, (1995) Fetal origins of coronary heart disease. BMJ 311: 171-174.
10. Gluckman PD, Hanson MA, (2004) Developmental origins of disease paradigm: a mechanistic and evolutionary perspective. Pediatric research 56: 311-317.
11. Michels KB, Harris HR, Barault L, (2011) Birthweight, maternal weight trajectories and global DNA methylation of LINE-1 repetitive elements. PLoS One 6: e25254.
12. Whyatt RM, Camann DE, Kinney PL, Reyes A, Ramirez J, et al. (2002) Residential pesticide use during pregnancy among a cohort of urban minority women. Environmental health perspectives 110: 507-514.
13. Perera FP, Rauh V, Tsai WY, Kinney P, Camann D, et al. (2003) Effects of transplacental exposure to environmental pollutants on birth outcomes in a multiethnic population. Environmental health perspectives 111: 201-205.
14. Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
15. Pranke P, Failace RR, Allebrandt WF, Steibel G, Schmidt F, et al. (2001) Hematologic and immunophenotypic characterization of human umbilical cord blood. Acta haematologica 105: 71-76.
16. Reed GF, Lynn F, Meade BD, (2002) Use of coefficient of variation in assessing variability of quantitative assays. Clinical and diagnostic laboratory immunology 9: 1235-1239.
17. CDC (2011) Body Mass Index. In: Prevention CfDCa, editor. Atlanta.
18. Alter O, Brown PO, Botstein D, (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci U S A 97: 10101-10106.
19. Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, et al. (2010) Tackling the widespread and critical impact of batch effects in high-throughput data. Nat Rev Genet 11: 733-739.
20. Herbstman JB, Tang D, Zhu D, Qu L, Sjodin A, et al. (2012) Prenatal exposure to polycyclic aromatic hydrocarbons, benzo[a]pyrene-DNA adducts, and genomic DNA methylation in cord blood. Environ Health Perspect 120: 733-738.
21. Reik W, (2007) Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 447: 425-432.
22. Hoal-van Helden EG, van Helden PD, (1989) Age-related methylation changes in DNA may reflect the proliferative potential of organs. Mutat Res 219: 263-266.
23. Wilson VL, Jones PA, (1983) DNA methylation decreases in aging but not in immortal cells. Science 220: 1055-1057.
24. Wilson VL, Smith RA, Ma S, Cutler RG, (1987) Genomic 5-methyldeoxycytidine decreases with age. J Biol Chem 262: 9948-9951.
25. Lopez MC, Palmer BE, Lawrence DA, (2009) Phenotypic differences between cord blood and adult peripheral blood. Cytometry B Clin Cytom 76: 37-46.
26. Orkin SH ND, Ginsburg D, Look AT, Fisher DE, Lux SE (2009) Nathan and Oski's Hematology of Infancy and Childhood. PhiladelphiaPA: Saunders Elsevier. 1841 p.
27. Reinius LE, Acevedo N, Joerink M, Pershagen G, Dahlen SE, et al. (2012) Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility. PLoS One 7: e41361.
28. Dedeurwaerder S, Defrance M, Calonne E, Denis H, Sotiriou C, et al. (2011) Evaluation of the Infinium Methylation 450K technology. Epigenomics 3: 771-784.
29. Heslehurst N, Simpson H, Ells LJ, Rankin J, Wilkinson J, et al. (2008) The impact of maternal BMI status on pregnancy outcomes with immediate short-term obstetric resource implications: a meta-analysis. Obes Rev 9: 635-683.
30. McMillen IC, Robinson JS, (2005) Developmental origins of the metabolic syndrome: prediction, plasticity, and programming. Physiol Rev 85: 571-633.
31. Huda SS, Brodie LE, Sattar N, (2010) Obesity in pregnancy: prevalence and metabolic consequences. Semin Fetal Neonatal Med 15: 70-76.
32. Shanmugam MK, Sethi G, (2012) Role of epigenetics in inflammation-associated diseases. Subcell Biochem 61: 627-657.
33. Waterland RA, Jirtle RL, (2003) Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Molecular and cellular biology 23: 5293-5300.
34. Organization WH (2009) Global database on body mass index. Geneva: WHO.
35. Kim SY, Dietz PM, England L, Morrow B, Callaghan WM, (2007) Trends in pre-pregnancy obesity in nine states, 1993-2003. Obesity (Silver Spring) 15: 986-993.
36. Lillycrop KA, Burdge GC, (2011) Epigenetic changes in early life and future risk of obesity. Int J Obes (Lond) 35: 72-83.
37. Gorber SC, Tremblay M, Moher D, Gorber B, (2007) A comparison of direct vs. self-report measures for assessing height, weight and body mass index: a systematic review. Obes Rev 8: 307-326.