-
1
-
-
24944524901
-
Biology of plant rhabdoviruses
-
Jackson AO, Dietzgen RG, Goodin MM, Bragg JN, Deng M. 2005. Biology of plant rhabdoviruses. Annu. Rev. Phytopathol. 43:623-660.
-
(2005)
Annu. Rev. Phytopathol.
, vol.43
, pp. 623-660
-
-
Jackson, A.O.1
Dietzgen, R.G.2
Goodin, M.M.3
Bragg, J.N.4
Deng, M.5
-
2
-
-
81555213558
-
Negative-strand RNA viruses: the plant-infecting counterparts
-
Kormelink R, Garcia ML, Goodin M, Sasaya T, Haenni AL. 2011. Negative-strand RNA viruses: the plant-infecting counterparts. Virus Res. 162:184-202.
-
(2011)
Virus Res.
, vol.162
, pp. 184-202
-
-
Kormelink, R.1
Garcia, M.L.2
Goodin, M.3
Sasaya, T.4
Haenni, A.L.5
-
3
-
-
84883305861
-
Family Rhabdoviridae
-
Elsevier Academic Press, Oxford, United Kingdom.
-
Dietzgen RG, Callisher CH, Kurath G, Kuzmin IV, Rodriguez LL, Stone DM, Tesh RB, Tordo N, Walker PJ. 2011. Family Rhabdoviridae. In King AM, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy, VIIIth Report of the ICTV. Elsevier Academic Press, Oxford, United Kingdom.
-
(2011)
In King AM, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy, VIIIth Report of the ICTV
-
-
Dietzgen, R.G.1
Callisher, C.H.2
Kurath, G.3
Kuzmin, I.V.4
Rodriguez, L.L.5
Stone, D.M.6
Tesh, R.B.7
Tordo, N.8
Walker, P.J.9
-
4
-
-
37049060512
-
Lettuce necrotic yellows virus
-
Stubbs LL, Grogan RG. 1963. Lettuce necrotic yellows virus. Nature 197:1229.
-
(1963)
Nature
, vol.197
, pp. 1229
-
-
Stubbs, L.L.1
Grogan, R.G.2
-
5
-
-
38349119420
-
Complete nucleotide sequence of a putative new cytorhabdovirus infecting lettuce
-
Heim F, Lot H, Delecolle B, Bassler A, Krczal G, Wetzel T. 2008. Complete nucleotide sequence of a putative new cytorhabdovirus infecting lettuce. Arch. Virol. 153:81-92.
-
(2008)
Arch. Virol.
, vol.153
, pp. 81-92
-
-
Heim, F.1
Lot, H.2
Delecolle, B.3
Bassler, A.4
Krczal, G.5
Wetzel, T.6
-
6
-
-
84863236110
-
Lettuce necrotic yellows cytorhabdovirus protein localization and interaction map, and comparison with nucleorhabdoviruses
-
Martin KM, Dietzgen RG, Wang R, Goodin MM. 2012. Lettuce necrotic yellows cytorhabdovirus protein localization and interaction map, and comparison with nucleorhabdoviruses. J. Gen. Virol. 93:906-914.
-
(2012)
J. Gen. Virol.
, vol.93
, pp. 906-914
-
-
Martin, K.M.1
Dietzgen, R.G.2
Wang, R.3
Goodin, M.M.4
-
7
-
-
0015070817
-
The multiplication of lettuce necrotic yellows virus
-
Wolanski BS, Chambers TC. 1971. The multiplication of lettuce necrotic yellows virus. Virology 44:582-591.
-
(1971)
Virology
, vol.44
, pp. 582-591
-
-
Wolanski, B.S.1
Chambers, T.C.2
-
8
-
-
33646023372
-
Completion of the genome sequence of lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus
-
Dietzgen RG, Callaghan B, Wetzel T, Dale JL. 2006. Completion of the genome sequence of lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Res. 118:16-22.
-
(2006)
Virus Res.
, vol.118
, pp. 16-22
-
-
Dietzgen, R.G.1
Callaghan, B.2
Wetzel, T.3
Dale, J.L.4
-
9
-
-
23944465475
-
Nucleocapsid gene variability reveals two subgroups of lettuce necrotic yellows virus
-
Callaghan B, Dietzgen RG. 2005. Nucleocapsid gene variability reveals two subgroups of lettuce necrotic yellows virus. Arch. Virol. 150:1661- 1667.
-
(2005)
Arch. Virol.
, vol.150
-
-
Callaghan, B.1
Dietzgen, R.G.2
-
10
-
-
0024094448
-
Analysis of lettuce necrotic yellows virus structural proteins with monoclonal antibodies and concanavalin A
-
Dietzgen RG, Francki RI. 1988. Analysis of lettuce necrotic yellows virus structural proteins with monoclonal antibodies and concanavalin A. Virology 166:486-494.
-
(1988)
Virology
, vol.166
, pp. 486-494
-
-
Dietzgen, R.G.1
Francki, R.I.2
-
11
-
-
0028331131
-
Genomic organization of lettuce necrotic yellows rhabdovirus
-
Wetzel T, Dietzgen RG, Dale JL. 1994. Genomic organization of lettuce necrotic yellows rhabdovirus. Virology 200:401-412.
-
(1994)
Virology
, vol.200
, pp. 401-412
-
-
Wetzel, T.1
Dietzgen, R.G.2
Dale, J.L.3
-
12
-
-
0028065173
-
Analysis of the nucleocapsid gene of lettuce necrotic yellows rhabdovirus
-
Wetzel T, Dietzgen RG, Geering AD, Dale JL. 1994. Analysis of the nucleocapsid gene of lettuce necrotic yellows rhabdovirus. Virology 202: 1054-1057.
-
(1994)
Virology
, vol.202
, pp. 1054-1057
-
-
Wetzel, T.1
Dietzgen, R.G.2
Geering, A.D.3
Dale, J.L.4
-
13
-
-
81555228721
-
Structural insights into the rhabdovirus transcription/replication complex
-
Ivanov I, Yabukarski F, Ruigrok RW, Jamin M. 2011. Structural insights into the rhabdovirus transcription/replication complex. Virus Res. 162: 126-137.
-
(2011)
Virus Res.
, vol.162
, pp. 126-137
-
-
Ivanov, I.1
Yabukarski, F.2
Ruigrok, R.W.3
Jamin, M.4
-
14
-
-
0016806446
-
Both NS and L proteins are required for in vitro RNA synthesis by vesicular stomatitis virus
-
Emerson SU, Yu Y. 1975. Both NS and L proteins are required for in vitro RNA synthesis by vesicular stomatitis virus. J. Virol. 15:1348-1356.
-
(1975)
J. Virol.
, vol.15
, pp. 1348-1356
-
-
Emerson, S.U.1
Yu, Y.2
-
15
-
-
0021794043
-
Role of the nucleocapsid protein in regulating vesicular stomatitis virus RNA synthesis
-
Arnheiter H, Davis NL, Wertz G, Schubert M, Lazzarini RA. 1985. Role of the nucleocapsid protein in regulating vesicular stomatitis virus RNA synthesis. Cell 41:259-267.
-
(1985)
Cell
, vol.41
, pp. 259-267
-
-
Arnheiter, H.1
Davis, N.L.2
Wertz, G.3
Schubert, M.4
Lazzarini, R.A.5
-
16
-
-
0023792843
-
Complex formation with vesicular stomatitis virus phosphoprotein NS prevents binding of nucleocapsid protein N to nonspecific RNA
-
Masters PS, Banerjee AK. 1988. Complex formation with vesicular stomatitis virus phosphoprotein NS prevents binding of nucleocapsid protein N to nonspecific RNA. J. Virol. 62:2658-2664.
-
(1988)
J. Virol.
, vol.62
, pp. 2658-2664
-
-
Masters, P.S.1
Banerjee, A.K.2
-
17
-
-
0023856783
-
Viral proteins required for the in vitro replication of vesicular stomatitis virus defective interfering particle genome RNA
-
Peluso RW, Moyer SA. 1988. Viral proteins required for the in vitro replication of vesicular stomatitis virus defective interfering particle genome RNA. Virology 162:369-376.
-
(1988)
Virology
, vol.162
, pp. 369-376
-
-
Peluso, R.W.1
Moyer, S.A.2
-
18
-
-
35148863197
-
Unphosphorylated Rhabdoviridae phosphoproteins form elongated dimers in solution
-
Gérard FCA, Ribeiro E, Albertini A, Zaccai G, Ebel C, Ruigrok R, Jamin M. 2007. Unphosphorylated Rhabdoviridae phosphoproteins form elongated dimers in solution. Biochemistry 46:10328-10338.
-
(2007)
Biochemistry
, vol.46
, pp. 10328-10338
-
-
Gérard, F.C.A.1
Ribeiro, E.2
Albertini, A.3
Zaccai, G.4
Ebel, C.5
Ruigrok, R.6
Jamin, M.7
-
19
-
-
67349262756
-
Modular organization of rabies virus phosphoprotein
-
Gérard FCA, Ribeiro EA, Leyrat C, Ivanov I, Blondel D, Longhi S, Ruigrok RWH, Jamin M. 2009. Modular organization of rabies virus phosphoprotein. J. Mol. Biol. 388:978-996.
-
(2009)
J. Mol. Biol.
, vol.388
, pp. 978-996
-
-
Gérard, F.C.A.1
Ribeiro, E.A.2
Leyrat, C.3
Ivanov, I.4
Blondel, D.5
Longhi, S.6
Ruigrok, R.W.H.7
Jamin, M.8
-
20
-
-
73849135618
-
The structure of the nucleoprotein binding domain of the Mokola virus phosphoprotein
-
Assenberg R, Delmas O, Ren J, Vidalain PO, Verma A, Larrous F, Graham SC, Tangy F, Grimes JM, Bourhy H. 2010. The structure of the nucleoprotein binding domain of the Mokola virus phosphoprotein. J. Virol. 84:1089-1096.
-
(2010)
J. Virol.
, vol.84
, pp. 1089-1096
-
-
Assenberg, R.1
Delmas, O.2
Ren, J.3
Vidalain, P.O.4
Verma, A.5
Larrous, F.6
Graham, S.C.7
Tangy, F.8
Grimes, J.M.9
Bourhy, H.10
-
21
-
-
33644774586
-
Crystal structure of the oligomerization domain of the phosphoprotein of vesicular stomatitis virus
-
Ding H, Green TJ, Lu S, Luo M. 2006. Crystal structure of the oligomerization domain of the phosphoprotein of vesicular stomatitis virus. J. Virol. 80:2808-2814.
-
(2006)
J. Virol.
, vol.80
, pp. 2808-2814
-
-
Ding, H.1
Green, T.J.2
Lu, S.3
Luo, M.4
-
22
-
-
77949393859
-
Structure of the dimerization domain of the rabies virus phosphoprotein
-
Ivanov I, Crepin T, Jamin M, Ruigrok R. 2010. Structure of the dimerization domain of the rabies virus phosphoprotein. J. Virol. 84: 3707-3710.
-
(2010)
J. Virol.
, vol.84
, pp. 3707-3710
-
-
Ivanov, I.1
Crepin, T.2
Jamin, M.3
Ruigrok, R.4
-
23
-
-
5144222412
-
Structure and function of the C-terminal domain of the polymerase cofactor of rabies virus
-
Mavrakis M, McCarthy AA, Roche S, Blondel D, Ruigrok RW. 2004. Structure and function of the C-terminal domain of the polymerase cofactor of rabies virus. J. Mol. Biol. 343:819-831.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 819-831
-
-
Mavrakis, M.1
McCarthy, A.A.2
Roche, S.3
Blondel, D.4
Ruigrok, R.W.5
-
24
-
-
50249088825
-
Solution structure of the C-terminal nucleoprotein-RNA binding domain of the vesicular stomatitis virus phosphoprotein
-
Ribeiro EA, Jr, Favier A, Gerard FC, Leyrat C, Brutscher B, Blondel D, Ruigrok RW, Blackledge M, Jamin M. 2008. Solution structure of the C-terminal nucleoprotein-RNA binding domain of the vesicular stomatitis virus phosphoprotein. J. Mol. Biol. 382:525-538.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 525-538
-
-
Ribeiro Jr., E.A.1
Favier, A.2
Gerard, F.C.3
Leyrat, C.4
Brutscher, B.5
Blondel, D.6
Ruigrok, R.W.7
Blackledge, M.8
Jamin, M.9
-
25
-
-
77955505585
-
The structure of the nucleoprotein binding domain of lyssavirus phosphoprotein reveals a structural relationship between the N-RNA binding domains of Rhabdoviridae and Paramyxoviridae
-
Delmas O, Assenberg R, Grimes JM, Bourhy H. 2010. The structure of the nucleoprotein binding domain of lyssavirus phosphoprotein reveals a structural relationship between the N-RNA binding domains of Rhabdoviridae and Paramyxoviridae. RNA Biol. 7:322-327.
-
(2010)
RNA Biol.
, vol.7
, pp. 322-327
-
-
Delmas, O.1
Assenberg, R.2
Grimes, J.M.3
Bourhy, H.4
-
26
-
-
84866501486
-
Ensemble structure of the modular and flexible full-length vesicular stomatitis virus phosphoprotein
-
Leyrat C, Schneider R, Ribeiro EA, Jr, Yabukarski F, Yao M, Gerard FC, Jensen MR, Ruigrok RW, Blackledge M, Jamin M. 2012. Ensemble structure of the modular and flexible full-length vesicular stomatitis virus phosphoprotein. J. Mol. Biol. 423:182-197.
-
(2012)
J. Mol. Biol.
, vol.423
, pp. 182-197
-
-
Leyrat, C.1
Schneider, R.2
Ribeiro Jr., E.A.3
Yabukarski, F.4
Yao, M.5
Gerard, FC.6
Jensen, M.R.7
Ruigrok, R.W.8
Blackledge, M.9
Jamin, M.10
-
27
-
-
0346752214
-
Structural disorder and modular organization in Paramyxovirinae N and P
-
Karlin D, Ferron F, Canard B, Longhi S. 2003. Structural disorder and modular organization in Paramyxovirinae N and P. J. Gen. Virol. 84: 3239-3252.
-
(2003)
J. Gen. Virol.
, vol.84
, pp. 3239-3252
-
-
Karlin, D.1
Ferron, F.2
Canard, B.3
Longhi, S.4
-
28
-
-
30344469079
-
Structural analysis of the human respiratory syncytial virus phosphoprotein: characterization of an alpha-helical domain involved in oligomerization
-
Llorente MT, Garcia-Barreno B, Calero M, Camafeita E, Lopez JA, Longhi S, Ferron F, Varela PF, Melero JA. 2006. Structural analysis of the human respiratory syncytial virus phosphoprotein: characterization of an alpha-helical domain involved in oligomerization. J. Gen. Virol. 87:159- 169.
-
(2006)
J. Gen. Virol.
, vol.87
-
-
Llorente, M.T.1
Garcia-Barreno, B.2
Calero, M.3
Camafeita, E.4
Lopez, J.A.5
Longhi, S.6
Ferron, F.7
Varela, P.F.8
Melero, J.A.9
-
29
-
-
73949090555
-
RNA induced polymerization of the Borna disease virus nucleoprotein
-
Hock M, Kraus I, Schoehn G, Jamin M, Andrei-Selmer C, Garten W, Weissenhorn W. 2010. RNA induced polymerization of the Borna disease virus nucleoprotein. Virology 397:64-72.
-
(2010)
Virology
, vol.397
, pp. 64-72
-
-
Hock, M.1
Kraus, I.2
Schoehn, G.3
Jamin, M.4
Andrei-Selmer, C.5
Garten, W.6
Weissenhorn, W.7
-
31
-
-
0027733616
-
Use of fast protein size-exclusion liquid chromatography to study the unfolding of proteins which denature through the molten globule
-
Uversky VN. 1993. Use of fast protein size-exclusion liquid chromatography to study the unfolding of proteins which denature through the molten globule. Biochemistry 32:13288-13298.
-
(1993)
Biochemistry
, vol.32
, pp. 13288-13298
-
-
Uversky, V.N.1
-
33
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
35
-
-
0018792428
-
Crystal structure of cat muscle pyruvate kinase at a resolution of 2.66 Å
-
Stuart DI, Levine M, Muirhead H, Stammers DK. 1979. Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 Å. J. Mol. Biol. 134:109-142.
-
(1979)
J. Mol. Biol.
, vol.134
, pp. 109-142
-
-
Stuart, D.I.1
Levine, M.2
Muirhead, H.3
Stammers, D.K.4
-
36
-
-
0037080244
-
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects
-
Rocchia W, Sridharan S, Nicholls A, Alexov E, Chiabrera A, Honig B. 2002. Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects. J. Comput. Chem. 23: 128-137.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 128-137
-
-
Rocchia, W.1
Sridharan, S.2
Nicholls, A.3
Alexov, E.4
Chiabrera, A.5
Honig, B.6
-
37
-
-
0034843597
-
AL2CO: calculation of positional conservation in a protein sequence alignment
-
Pei J, Grishin NV. 2001. AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 17:700-712.
-
(2001)
Bioinformatics
, vol.17
, pp. 700-712
-
-
Pei, J.1
Grishin, N.V.2
-
39
-
-
84857734722
-
Detecting remote sequence homology in disordered proteins: discovery of conserved motifs in the N-termini of Mononegavirales phosphoproteins
-
doi:10.1371 /journal.pone.0031719
-
Karlin D, Belshaw R. 2012. Detecting remote sequence homology in disordered proteins: discovery of conserved motifs in the N-termini of Mononegavirales phosphoproteins. PLoS One 7:e31719. doi:10.1371 /journal.pone.0031719.
-
(2012)
PLoS One
, vol.7
-
-
Karlin, D.1
Belshaw, R.2
-
41
-
-
0037237545
-
Automated main-chain model building by template matching and iterative fragment extension
-
Terwilliger TC. 2003. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr.DBiol. Crystallogr. 59:38-44.
-
(2003)
Acta Crystallogr.DBiol. Crystallogr.
, vol.59
, pp. 38-44
-
-
Terwilliger, T.C.1
-
42
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov GN, Skubak P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA. 2011. REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr.DBiol. Crystallogr. 67:355-367.
-
(2011)
Acta Crystallogr.DBiol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
43
-
-
1342321890
-
Structure and dynamics of the nucleocapsid- binding domain of the Sendai virus phosphoprotein in solution
-
Blanchard L, Tarbouriech N, Blackledge M, Timmins P, Burmeister WP, Ruigrok RW, Marion D. 2004. Structure and dynamics of the nucleocapsid- binding domain of the Sendai virus phosphoprotein in solution. Virology 319:201-211.
-
(2004)
Virology
, vol.319
, pp. 201-211
-
-
Blanchard, L.1
Tarbouriech, N.2
Blackledge, M.3
Timmins, P.4
Burmeister, W.P.5
Ruigrok, R.W.6
Marion, D.7
-
44
-
-
0242582329
-
Crystal structure of the measles virus phosphoprotein domain responsible for the induced folding of the C-terminal domain of the nucleoprotein
-
Johansson K, Bourhis JM, Campanacci V, Cambillau C, Canard B, Longhi S. 2003. Crystal structure of the measles virus phosphoprotein domain responsible for the induced folding of the C-terminal domain of the nucleoprotein. J. Biol. Chem. 278:44567-44573.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 44567-44573
-
-
Johansson, K.1
Bourhis, J.M.2
Campanacci, V.3
Cambillau, C.4
Canard, B.5
Longhi, S.6
-
45
-
-
44149110311
-
Structure of the nucleocapsid-binding domain from the mumps virus polymerase; an example of protein folding induced by crystallization
-
Kingston RL, Gay LS, Baase WS, Matthews BW. 2008. Structure of the nucleocapsid-binding domain from the mumps virus polymerase; an example of protein folding induced by crystallization. J. Mol. Biol. 379:719- 731.
-
(2008)
J. Mol. Biol.
, vol.379
-
-
Kingston, R.L.1
Gay, L.S.2
Baase, W.S.3
Matthews, B.W.4
-
46
-
-
58849098002
-
Structure of the Ebola VP35 interferon inhibitory domain
-
Leung DW, Ginder ND, Fulton DB, Nix J, Basler CF, Honzatko RB, Amarasinghe GK. 2009. Structure of the Ebola VP35 interferon inhibitory domain. Proc. Natl. Acad. Sci. U. S. A. 106:411-416.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 411-416
-
-
Leung, D.W.1
Ginder, N.D.2
Fulton, D.B.3
Nix, J.4
Basler, C.F.5
Honzatko, R.B.6
Amarasinghe, G.K.7
-
47
-
-
76349125544
-
Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35
-
Leung DW, Prins KC, Borek DM, Farahbakhsh M, Tufariello JM, Ramanan P, Nix JC, Helgeson LA, Otwinowski Z, Honzatko RB, Basler CF, Amarasinghe GK. 2010. Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat. Struct. Mol. Biol. 17:165-172.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 165-172
-
-
Leung, D.W.1
Prins, K.C.2
Borek, D.M.3
Farahbakhsh, M.4
Tufariello, J.M.5
Ramanan, P.6
Nix, J.C.7
Helgeson, L.A.8
Otwinowski, Z.9
Honzatko, R.B.10
Basler, C.F.11
Amarasinghe, G.K.12
-
48
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E, Henrick K. 2004. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60:2256-2268.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
49
-
-
17644392830
-
TM-align: a protein structure alignment algorithm based on the TM-score
-
Zhang Y, Skolnick J. 2005. TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res. 33:2302-2309.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2302-2309
-
-
Zhang, Y.1
Skolnick, J.2
-
50
-
-
66349125446
-
The mechanism of specific binding of free cholesterol by the steroidogenic acute regulatory protein: evidence for a role of the C-terminal alpha-helix in the gating of the binding site
-
Roostaee A, Barbar E, Lavigne P, LeHoux JG. 2009. The mechanism of specific binding of free cholesterol by the steroidogenic acute regulatory protein: evidence for a role of the C-terminal alpha-helix in the gating of the binding site. Biosci. Rep. 29:89-101.
-
(2009)
Biosci. Rep.
, vol.29
, pp. 89-101
-
-
Roostaee, A.1
Barbar, E.2
Lavigne, P.3
LeHoux, J.G.4
-
51
-
-
0024784519
-
Identification of four conserved motifs among the RNA-dependent polymerase encoding elements
-
Poch O, Sauvaget I, Delarue M, Tordo N. 1989. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J. 8:3867-3874.
-
(1989)
EMBO J.
, vol.8
, pp. 3867-3874
-
-
Poch, O.1
Sauvaget, I.2
Delarue, M.3
Tordo, N.4
-
52
-
-
77954931848
-
Genomics and structure/function studies of Rhabdoviridae proteins involved in replication and transcription
-
Assenberg R, Delmas O, Morin B, Graham SC, De Lamballerie X, Laubert C, Coutard B, Grimes JM, Neyts J, Owens RJ, Brandt BW, Gorbalenya A, Tucker P, Stuart DI, Canard B, Bourhy H. 2010. Genomics and structure/function studies of Rhabdoviridae proteins involved in replication and transcription. Antiviral Res. 87:149-161.
-
(2010)
Antiviral Res.
, vol.87
, pp. 149-161
-
-
Assenberg, R.1
Delmas, O.2
Morin, B.3
Graham, S.C.4
De Lamballerie, X.5
Laubert, C.6
Coutard, B.7
Grimes, J.M.8
Neyts, J.9
Owens, R.J.10
Brandt, B.W.11
Gorbalenya, A.12
Tucker, P.13
Stuart, D.I.14
Canard, B.15
Bourhy, H.16
-
53
-
-
80051781196
-
Nucleoproteins and nucleocapsids of negative-strand RNA viruses
-
Ruigrok RW, Crepin T, Kolakofsky D. 2011. Nucleoproteins and nucleocapsids of negative-strand RNA viruses. Curr. Opin. Microbiol. 14: 504-510.
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 504-510
-
-
Ruigrok, R.W.1
Crepin, T.2
Kolakofsky, D.3
-
54
-
-
42649119885
-
Mononegavirales
-
Lippincott Williams & Wilkins, Philadelphia, PA
-
Lamb RA. 2007. Mononegavirales, p 1357-1361. In Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (ed), Fields virology, 5th ed, vol 1. Lippincott Williams & Wilkins, Philadelphia, PA.
-
(2007)
In Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (ed), Fields virology 5th ed
, vol.1
, pp. 1357-1361
-
-
Lamb, R.A.1
-
55
-
-
2942687589
-
Biochemical characterization of the respiratory syncytial virus P-P and P-N protein complexes and localization of the P protein oligomerization domain
-
Castagne N, Barbier A, Bernard J, Rezaei H, Huet JC, Henry C, Da Costa B, Eleouet JF. 2004. Biochemical characterization of the respiratory syncytial virus P-P and P-N protein complexes and localization of the P protein oligomerization domain. J. Gen. Virol. 85:1643-1653.
-
(2004)
J. Gen. Virol.
, vol.85
, pp. 1643-1653
-
-
Castagne, N.1
Barbier, A.2
Bernard, J.3
Rezaei, H.4
Huet, J.C.5
Henry, C.6
Da Costa, B.7
Eleouet, J.F.8
-
56
-
-
26244437083
-
Homo-oligomerization facilitates the interferon-antagonist activity of the ebolavirus VP35 protein
-
Reid SP, Cardenas WB, Basler CF. 2005. Homo-oligomerization facilitates the interferon-antagonist activity of the ebolavirus VP35 protein. Virology 341:179-189.
-
(2005)
Virology
, vol.341
, pp. 179-189
-
-
Reid, S.P.1
Cardenas, W.B.2
Basler, C.F.3
-
57
-
-
79952149646
-
The N0-binding region of the vesicular stomatitis virus phosphoprotein is globally disordered but contains transient α-helices
-
Leyrat C, Jensen MR, Ribeiro EA, Gérard F, Ruigrok R, Blackledge M, Jamin M. 2011. The N0-binding region of the vesicular stomatitis virus phosphoprotein is globally disordered but contains transient α-helices. Protein Sci. 20:542-556.
-
(2011)
Protein Sci.
, vol.20
, pp. 542-556
-
-
Leyrat, C.1
Jensen, M.R.2
Ribeiro, E.A.3
Gérard, F.4
Ruigrok, R.5
Blackledge, M.6
Jamin, M.7
-
58
-
-
80053445234
-
Structure of the vesicular stomatitis virus N-P complex
-
doi:10.1371 /journal.ppat.1002248
-
Leyrat C, Yabukarski F, Tarbouriech N, Ribeiro EA, Jr, Jensen MR, Blackledge M, Ruigrok RW, Jamin M. 2011. Structure of the vesicular stomatitis virus N-P complex. PLoS Pathog. 7:e1002248. doi:10.1371 /journal.ppat.1002248.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Leyrat, C.1
Yabukarski, F.2
Tarbouriech, N.3
Ribeiro Jr., E.A.4
Jensen, M.R.5
Blackledge, M.6
Ruigrok, R.W.7
Jamin, M.8
-
60
-
-
0031324284
-
The order Mononegavirales-current status
-
Pringle CR. 1997. The order Mononegavirales-current status. Arch. Virol. 142:2321-2326.
-
(1997)
Arch. Virol.
, vol.142
, pp. 2321-2326
-
-
Pringle, C.R.1
-
62
-
-
67650872991
-
Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, P
-
Green TJ, Luo M. 2009. Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, P. Proc. Natl. Acad. Sci. U. S. A. 106:11721-11726.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 11721-11726
-
-
Green, T.J.1
Luo, M.2
-
63
-
-
70350721626
-
Binding of rabies virus polymerase cofactor to recombinant circular nucleoprotein-RNA complexes
-
Ribeiro EA, Leyrat C, Gérard FC, Albertini AA, Falk C, Ruigrok RW, Jamin M. 2009. Binding of rabies virus polymerase cofactor to recombinant circular nucleoprotein-RNA complexes. J. Mol. Biol. 394:558-575.
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 558-575
-
-
Ribeiro, E.A.1
Leyrat, C.2
Gérard, F.C.3
Albertini, A.A.4
Falk, C.5
Ruigrok, R.W.6
Jamin, M.7
-
64
-
-
84857998251
-
Mechanism of RNA synthesis initiation by the vesicular stomatitis virus polymerase
-
Morin B, Rahmeh AA, Whelan SP. 2012. Mechanism of RNA synthesis initiation by the vesicular stomatitis virus polymerase. EMBO J. 31:1320- 1329.
-
(2012)
EMBO J.
, vol.31
-
-
Morin, B.1
Rahmeh, A.A.2
Whelan, S.P.3
-
65
-
-
0032837573
-
Transcript initiation and 5=-end modifications are separable events during vesicular stomatitis virus transcription
-
Stillman EA, Whitt M. 1999. Transcript initiation and 5=-end modifications are separable events during vesicular stomatitis virus transcription. J. Virol. 73:7199-7209.
-
(1999)
J. Virol.
, vol.73
, pp. 7199-7209
-
-
Stillman, E.A.1
Whitt, M.2
-
66
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco KW, Simons KT, Baker D. 1998. Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 277:985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
67
-
-
79959987543
-
Intrinsic disorder in measles virus nucleocapsids
-
Jensen MR, Communie G, Ribeiro EA, Jr, Martinez N, Desfosses A, Salmon L, Mollica L, Gabel F, Jamin M, Longhi S, Ruigrok RW, Blackledge M. 2011. Intrinsic disorder in measles virus nucleocapsids. Proc. Natl. Acad. Sci. U. S. A. 108:9839-9844.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 9839-9844
-
-
Jensen, M.R.1
Communie, G.2
Ribeiro Jr., E.A.3
Martinez, N.4
Desfosses, A.5
Salmon, L.6
Mollica, L.7
Gabel, F.8
Jamin, M.9
Longhi, S.10
Ruigrok, R.W.11
Blackledge, M.12
-
68
-
-
77955378293
-
Solution structure of the C-terminal X domain of the measles virus phosphoprotein and interaction with the intrinsically disordered C-terminal domain of the nucleoprotein
-
Gely S, Lowry DF, Bernard C, Jensen MR, Blackledge M, Costanzo S, Bourhis JM, Darbon H, Daughdrill G, Longhi S. 2010. Solution structure of the C-terminal X domain of the measles virus phosphoprotein and interaction with the intrinsically disordered C-terminal domain of the nucleoprotein. J. Mol. Recognit. 23:435-447.
-
(2010)
J. Mol. Recognit.
, vol.23
, pp. 435-447
-
-
Gely, S.1
Lowry, D.F.2
Bernard, C.3
Jensen, M.R.4
Blackledge, M.5
Costanzo, S.6
Bourhis, J.M.7
Darbon, H.8
Daughdrill, G.9
Longhi, S.10
-
69
-
-
77958027714
-
Structural disorder within Sendai virus nucleoprotein and phosphoprotein: insight into the structural basis of molecular recognition
-
Jensen MR, Bernado P, Houben K, Blanchard L, Marion D, Ruigrok RW, Blackledge M. 2010. Structural disorder within Sendai virus nucleoprotein and phosphoprotein: insight into the structural basis of molecular recognition. Protein Pept. Lett. 17:952-960.
-
(2010)
Protein Pept. Lett.
, vol.17
, pp. 952-960
-
-
Jensen, M.R.1
Bernado, P.2
Houben, K.3
Blanchard, L.4
Marion, D.5
Ruigrok, R.W.6
Blackledge, M.7
-
70
-
-
2942595913
-
Structural basis for the attachment of a paramyxoviral polymerase to its template
-
Kingston RL, Hamel DJ, Gay LS, Dahlquist FW, Matthews BW. 2004. Structural basis for the attachment of a paramyxoviral polymerase to its template. Proc. Natl. Acad. Sci. U. S. A. 101:8301-8306.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 8301-8306
-
-
Kingston, R.L.1
Hamel, D.J.2
Gay, L.S.3
Dahlquist, F.W.4
Matthews, B.W.5
-
71
-
-
84865097975
-
Characterization of a viral phosphoprotein binding site on the surface of the respiratory syncytial nucleoprotein
-
Galloux M, Tarus B, Blazevic I, Fix J, Duquerroy S, Eleouet JF. 2012. Characterization of a viral phosphoprotein binding site on the surface of the respiratory syncytial nucleoprotein. J. Virol. 86:8375-8387.
-
(2012)
J. Virol.
, vol.86
, pp. 8375-8387
-
-
Galloux, M.1
Tarus, B.2
Blazevic, I.3
Fix, J.4
Duquerroy, S.5
Eleouet, J.F.6
-
72
-
-
33846167722
-
The nine C-terminal amino acids of the respiratory syncytial virus protein P are necessary and sufficient for binding to ribonucleoprotein complexes in which six ribonucleotides are contacted per N protein protomer
-
Tran TL, Castagne N, Bhella D, Varela PF, Bernard J, Chilmonczyk S, Berkenkamp S, Benhamo V, Grznarova K, Grosclaude J, Nespoulos C, Rey FA, Eleouet JF. 2007. The nine C-terminal amino acids of the respiratory syncytial virus protein P are necessary and sufficient for binding to ribonucleoprotein complexes in which six ribonucleotides are contacted per N protein protomer. J. Gen. Virol. 88:196-206.
-
(2007)
J. Gen. Virol.
, vol.88
, pp. 196-206
-
-
Tran, T.L.1
Castagne, N.2
Bhella, D.3
Varela, P.F.4
Bernard, J.5
Chilmonczyk, S.6
Berkenkamp, S.7
Benhamo, V.8
Grznarova, K.9
Grosclaude, J.10
Nespoulos, C.11
Rey, F.A.12
Eleouet, J.F.13
-
73
-
-
77957189097
-
Basic residues within the ebolavirus VP35 protein are required for its viral polymerase cofactor function
-
Prins KC, Binning JM, Shabman RS, Leung DW, Amarasinghe GK, Basler CF. 2010. Basic residues within the ebolavirus VP35 protein are required for its viral polymerase cofactor function. J. Virol. 84:10581- 10591.
-
(2010)
J. Virol.
, vol.84
-
-
Prins, K.C.1
Binning, J.M.2
Shabman, R.S.3
Leung, D.W.4
Amarasinghe, G.K.5
Basler, C.F.6
-
74
-
-
0027505069
-
Mapping of interacting domains between the nucleocapsid protein and the phosphoprotein of vesicular stomatitis virus by using a two-hybrid system
-
Takacs AM, Das T, Banerjee AK. 1993. Mapping of interacting domains between the nucleocapsid protein and the phosphoprotein of vesicular stomatitis virus by using a two-hybrid system. Proc. Natl. Acad. Sci. U. S. A. 90:10375-10379.
-
(1993)
Proc. Natl. Acad. Sci. U. S. A.
, vol.90
, pp. 10375-10379
-
-
Takacs, A.M.1
Das, T.2
Banerjee, A.K.3
-
75
-
-
0026531036
-
Sequential phosphorylation of the phosphoprotein of vesicular stomatitis virus by cellular and viral protein kinases is essential for transcription activation
-
Barik S, Banerjee AK. 1992. Sequential phosphorylation of the phosphoprotein of vesicular stomatitis virus by cellular and viral protein kinases is essential for transcription activation. J. Virol. 66:1109-1118.
-
(1992)
J. Virol.
, vol.66
, pp. 1109-1118
-
-
Barik, S.1
Banerjee, A.K.2
-
76
-
-
0031564078
-
Basic amino acid residues at the carboxy-terminal eleven amino acid region of the phosphoprotein (P) are required for transcription but not for replication of vesicular stomatitis virus genome RNA
-
Das T, Pattnaik AK, Takacs AM, Li T, Hwang LN, Banerjee AK. 1997. Basic amino acid residues at the carboxy-terminal eleven amino acid region of the phosphoprotein (P) are required for transcription but not for replication of vesicular stomatitis virus genome RNA. Virology 238:103- 114.
-
(1997)
Virology
, vol.238
-
-
Das, T.1
Pattnaik, A.K.2
Takacs, A.M.3
Li, T.4
Hwang, L.N.5
Banerjee, A.K.6
-
77
-
-
35648945324
-
Nucleocytoplasmic distribution of rabies virus P-protein is regulated by phosphorylation adjacent to C-terminal nuclear import and export signals
-
Moseley GW, Filmer RP, DeJesus MA, Jans DA. 2007. Nucleocytoplasmic distribution of rabies virus P-protein is regulated by phosphorylation adjacent to C-terminal nuclear import and export signals. Biochemistry 46:12053-12061.
-
(2007)
Biochemistry
, vol.46
, pp. 12053-12061
-
-
Moseley, G.W.1
Filmer, R.P.2
DeJesus, M.A.3
Jans, D.A.4
-
78
-
-
15244339820
-
Nucleocytoplasmic shuttling of the rabies virus P protein requires a nuclear localization signal and a CRM1-dependent nuclear export signal
-
Pasdeloup D, Poisson N, Raux H, Gaudin Y, Ruigrok RW, Blondel D. 2005. Nucleocytoplasmic shuttling of the rabies virus P protein requires a nuclear localization signal and a CRM1-dependent nuclear export signal. Virology 334:284-293.
-
(2005)
Virology
, vol.334
, pp. 284-293
-
-
Pasdeloup, D.1
Poisson, N.2
Raux, H.3
Gaudin, Y.4
Ruigrok, R.W.5
Blondel, D.6
-
79
-
-
18744379736
-
Rabies virus P and small P products interact directly with PML and reorganize PML nuclear bodies
-
Blondel D, Regad T, Poisson N, Pavie B, Harper F, Pandolfi PP, De The H, Chelbi-Alix MK. 2002. Rabies virus P and small P products interact directly with PML and reorganize PML nuclear bodies. Oncogene 21: 7957-7970.
-
(2002)
Oncogene
, vol.21
, pp. 7957-7970
-
-
Blondel, D.1
Regad, T.2
Poisson, N.3
Pavie, B.4
Harper, F.5
Pandolfi, P.P.6
De The, H.7
Chelbi-Alix, M.K.8
-
80
-
-
33644787054
-
Inhibition of interferon signaling by rabies virus phosphoprotein P: activation-dependent binding of STAT1 and STAT2
-
Brzozka K, Finke S, Conzelmann KK. 2006. Inhibition of interferon signaling by rabies virus phosphoprotein P: activation-dependent binding of STAT1 and STAT2. J. Virol. 80:2675-2683.
-
(2006)
J. Virol.
, vol.80
, pp. 2675-2683
-
-
Brzozka, K.1
Finke, S.2
Conzelmann, K.K.3
-
81
-
-
27644546664
-
Rabies virus P protein interacts with STAT1 and inhibits interferon signal transduction pathways
-
Vidy A, Chelbi-Alix M, Blondel D. 2005. Rabies virus P protein interacts with STAT1 and inhibits interferon signal transduction pathways. J. Virol. 79:14411-14420.
-
(2005)
J. Virol.
, vol.79
, pp. 14411-14420
-
-
Vidy, A.1
Chelbi-Alix, M.2
Blondel, D.3
-
83
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: combining chain tracing with density modification
-
Heldrick GM. 2010. Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr. D Biol. Crystallogr. 66:479-485.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 479-485
-
-
Heldrick, G.M.1
-
84
-
-
0037237545
-
Automated main-chain model building by template matching and iterative fragment extension
-
Terwilliger TC. 2003. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr.DBiol. Crystallogr. 59:38-44.
-
(2003)
Acta Crystallogr.DBiol. Crystallogr.
, vol.59
, pp. 38-44
-
-
Terwilliger, T.C.1
-
85
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov GN, Skubak P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA. 2011. REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr.DBiol. Crystallogr. 67:355-367.
-
(2011)
Acta Crystallogr.DBiol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
|