Insertional mutagenesis using Tnt1 retrotransposon in potato

Plant Physiology

Volumn 163, Issue 1, 2013, Pages 21-29

  Duangpan, Saowapa ^a   Zhang, Wenli ^a   Wu, Yufang ^a   Jansky, Shelley H ^a,b   Jiang, Jiming ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b U S DAIRY FORAGE RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NICOTIANA TABACUM; SOLANUM CHACOENSE; SOLANUM JAMESII; SOLANUM TUBEROSUM;

ARTICLE; GENE EXPRESSION REGULATION; GENETICS; METHODOLOGY; PLANT GENOME; POTATO; RETROPOSON; TOBACCO;

GENOME, PLANT; MUTAGENESIS, INSERTIONAL; RETROELEMENTS; SOLANUM TUBEROSUM; TOBACCO;

EID: 84883255284     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.113.221903     Document Type: Article

References (42)

1. Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen HM, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, et al (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657
2. Bhaskar PB, Raasch JA, Kramer LC, Neumann P, Wielgus SM, Austin-Phillips S, Jiang JM (2008) Sgt1, but not Rar1, is essential for the RB-mediated broadspectrum resistance to potato late blight. BMC Plant Biol 8: 8
3. Bourcy M, Brocard L, Pislariu CI, Cosson V, Mergaert P, Tadege M, Mysore KS, Udvardi MK, Gourion B, Ratet P (2013) Medicago truncatula DNF2 is a PI-PLC-XD-containing protein required for bacteroid persistence and prevention of nodule early senescence and defense-like reactions. New Phytol 197: 1250-1261
4. Cheng XF, Peng JL, Ma JY, Tang YH, Chen RJ, Mysore KS, Wen JQ (2012) NO APICAL MERISTEM (MtNAM) regulates floral organ identity and lateral organ separation in Medicago truncatula. New Phytol 195: 71-84
5. Cheng XF, Wen JQ, Tadege M, Ratet P, Mysore KS (2011) Reverse genetics in Medicago truncatula using Tnt1 insertion mutants. Methods Mol Biol 678: 179-190
6. Courtial B, Feuerbach F, Eberhard S, Rohmer L, Chiapello H, Camilleri C, Lucas H (2001) Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes. Mol Genet Genomics 265: 32-42
7. Cui Y, Barampuram S, Stacey MG, Hancock CN, Findley S, Mathieu M, Zhang ZY, Parrott WA, Stacey G (2013) Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics. Plant Physiol 161: 36-47
8. d'Erfurth I, Cosson V, Eschstruth A, Lucas H, Kondorosi A, Ratet P (2003) Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula. Plant J 34: 95-106
9. Felcher KJ, Coombs JJ, Massa AN, Hansey CN, Hamilton JP, Veilleux RE, Buell CR, Douches DS (2012) Integration of two diploid potato linkage maps with the potato genome sequence. PLoS ONE 7: e36347
10. Fukai E, Soyano T, Umehara Y, Nakayama S, Hirakawa H, Tabata S, Sato S, Hayashi M (2012) Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1. Plant J 69: 720-730
11. Grandbastien MA, Spielmann A, Caboche M (1989) Tnt1, a mobile retrovirallike transposable element of tobacco isolated by plant cell genetics. Nature 337: 376-380
12. Hamilton JP, Hansey CN, Whitty BR, Stoffel K, Massa AN, Van Deynze A, De Jong WS, Douches DS, Buell CR (2011) Single nucleotide polymorphism discovery in elite North American potato germplasm. BMC Genomics 12: 302
13. Hermundstad SA, Peloquin SJ (1985) Germplasm enhancement with potato haploids. J Hered 76: 463-467
14. Hirochika H (2010) Insertional mutagenesis with Tos17 for functional analysis of rice genes. Breed Sci 60: 486-492
15. Hirochika H, Otsuki H, Yoshikawa M, Otsuki Y, Sugimoto K, Takeda S (1996) Autonomous transposition of the tobacco retrotransposon Tto1 in rice. Plant Cell 8: 725-734
16. Hosaka K, Hanneman RE (1998a) Genetics of self-compatibility in a selfincompatible wild diploid potato species Solanum chacoense. 1. Detection of an S locus inhibitor (Sli) gene. Euphytica 99: 191-197
17. Hosaka K, Hanneman RE (1998b) Genetics of self-compatibility in a selfincompatible wild diploid potato species Solanum chacoense. 2. Localization of an S locus inhibitor (Sli) gene on the potato genome using DNA markers. Euphytica 103: 265-271
18. Ishizaki T, Kato A (2005) Introduction of the tobacco retrotransposon Tto1 into diploid potato. Plant Cell Rep 24: 52-58
19. Jeon JS, Lee S, Jung KH, Jun SH, Jeong DH, Lee J, Kim C, Jang S, Yang K, Nam J, et al (2000) T-DNA insertional mutagenesis for functional genomics in rice. Plant J 22: 561-570
20. Kent WJ (2002) BLAT: the BLAST-like alignment tool. Genome Res 12: 656-664
21. Kittipadukal P, Bethke PC, Jansky SH (2012) The effect of photoperiod on tuberisation in cultivated × wild potato species hybrids. Potato Res 55: 27-40
22. Krysan PJ, Young JC, Sussman MR (1999) T-DNA as an insertional mutagen in Arabidopsis. Plant Cell 11: 2283-2290
23. Laurie RE, Diwadkar P, Jaudal M, Zhang LL, Hecht V, Wen JQ, Tadege M, Mysore KS, Putterill J, Weller JL, et al (2011) The Medicago FLOWERING LOCUS T homolog, MtFTa1, is a key regulator of flowering time. Plant Physiol 156: 2207-2224
24. Leue EF, Peloquin SJ (1980) Selection for 2n gametes and tuberization in Solanum chacoense. Am Potato J 57: 189-195
25. Love SL, Pavek JJ, Thompson-Johns A, Bohl W (1998) Breeding progress for potato chip quality in North American cultivars. Am J Potato Res 75: 27-36
26. Lucas H, Feuerbach F, Kunert K, Grandbastien MA, Caboche M (1995) RNA-mediated transposition of the tobacco retrotransposon Tnt1 in Arabidopsis thaliana. EMBO J 14: 2364-2373
27. Luo D, Coen ES, Doyle S, Carpenter R (1991) Pigmentation mutants produced by transposon mutagenesis in Antirrhinum majus. Plant J 1: 59-69
28. Mazier M, Botton E, Flamain F, Bouchet JP, Courtial B, Chupeau M-C, Chupeau Y, Maisonneuve B, Lucas H (2007) Successful gene tagging in lettuce using the Tnt1 retrotransposon from tobacco. Plant Physiol 144: 18-31
29. Miller JT, Spooner DM (1996) Introgression of Solanum chacoense (Solanum sect Petota): upland populations reexamined. Syst Bot 21: 461-475
30. Okamoto H, Hirochika H (2000) Efficient insertion mutagenesis of Arabidopsis by tissue culture-induced activation of the tobacco retrotransposon Tto1. Plant J 23: 291-304
31. Pang YZ, Wenger JP, Saathoff K, Peel GJ, Wen JQ, Huhman D, Allen SN, Tang YH, Cheng XF, Tadege M, et al (2009) A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development. Plant Physiol 151: 1114-1129
32. Pérez-Hormaeche J, Potet F, Beauclair L, Le Masson I, Courtial B, Bouché N, Lucas H (2008) Invasion of the Arabidopsis genome by the tobacco retrotransposon Tnt1 is controlled by reversible transcriptional gene silencing. Plant Physiol 147: 1264-1278
33. Regan S, Gustafson V, Mallubhotla S, Chakravarty B, Bagchi M, Siahbazi M, Rothwell C, Sardana R, Goyer C, Audy P, et al (2006) Finding the perfect potato: using functional genomics to improve disease resistance and tuber quality traits. Can J Plant Pathol 28: S247-S255
34. Sallaud C, Gay C, Larmande P, Bès M, Piffanelli P, Piégu B, Droc G, Regad F, Bourgeois E, Meynard D, et al (2004) High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J 39: 450-464
35. Sambrook J, Fritsch EJ, Maniatis T (2001) Molecular Cloning: A Laboratory Manual, Ed 3. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
36. Tadege M, Lin H, Bedair M, Berbel A, Wen JQ, Rojas CM, Niu LF, Tang YH, Sumner L, Ratet P, et al (2011) STENOFOLIA regulates blade outgrowth and leaf vascular patterning in Medicago truncatula and Nicotiana sylvestris. Plant Cell 23: 2125-2142
37. Tadege M, Wen JQ, He J, Tu HD, Kwak Y, Eschstruth A, Cayrel A, Endre G, Zhao PX, Chabaud M, et al (2008) Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula. Plant J 54: 335-347
38. Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, et al (2011) Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195
39. Walbot V (1992) Strategies for mutagenesis and gene cloning using transposon tagging and T-DNA insertional mutagenesis. Annu Rev Plant Physiol Plant Mol Biol 43: 49-82
40. Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, et al (2000) Activation tagging in Arabidopsis. Plant Physiol 122: 1003-1013
41. Zhao Q, Gallego-Giraldo L, Wang H, Zeng Y, Ding S-Y, Chen F, Dixon RA (2010) An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. Plant J 63: 100-114
42. Zhou C, Han L, Pislariu C, Nakashima J, Fu C, Jiang Q, Quan L, Blancaflor EB, Tang Y, Bouton JH, et al (2011) From model to crop: functional analysis of a STAY-GREEN gene in the model legume Medicago truncatula and effective use of the gene for alfalfa improvement. Plant Physiol 157: 1483-1496