-
1
-
-
0035100055
-
Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion: Tagging of a zeaxanthin epoxidase gene and a novel OsTATC gene
-
Agrawal, G.K., M. Yamazaki, M. Kobayashi, R. Hirochika, A. Miyao and H. Hirochika (2001) Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion: Tagging of a zeaxanthin epoxidase gene and a novel OsTATC gene. Plant Physiol. 125: 1248-1257.
-
(2001)
Plant Physiol
, vol.125
, pp. 1248-1257
-
-
Agrawal, G.K.1
Yamazaki, M.2
Kobayashi, M.3
Hirochika, R.4
Miyao, A.5
Hirochika, H.6
-
2
-
-
26444467169
-
Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-offunction mutants of the OsMADS1 gene
-
Agrawal, G.K., K. Abe, M. Yamazaki, A. Miyao and H. Hirochika (2005) Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-offunction mutants of the OsMADS1 gene. Plant Mol. Biol. 59: 125-135.
-
(2005)
Plant Mol. Biol
, vol.59
, pp. 125-135
-
-
Agrawal, G.K.1
Abe, K.2
Yamazaki, M.3
Miyao, A.4
Hirochika, H.5
-
3
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso, J.M., A.N. Stepanova, T.J. Leisse, C.J. Kim, H. Chen, P. Shinn, D.K. Stevenson, J. Zimmerman, P. Barajas, R. Cheuk et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
4
-
-
26444606967
-
Reverse genetic approaches for functional genomics of rice
-
An, G., D.H. Jeong, K.H. Jung and S. Lee (2005) Reverse genetic approaches for functional genomics of rice. Plant Mol. Biol. 59: 111-123.
-
(2005)
Plant Mol. Biol
, vol.59
, pp. 111-123
-
-
An, G.1
Jeong, D.H.2
Jung, K.H.3
Lee, S.4
-
5
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
6
-
-
0032568799
-
Yeast retrotransposons: Finding a nice quiet neighborhood
-
Boeke, J.D. and S.E. Devine (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93: 1087-1089.
-
(1998)
Cell
, vol.93
, pp. 1087-1089
-
-
Boeke, J.D.1
Devine, S.E.2
-
7
-
-
0141907758
-
Distribution and characterization of over 1000 TDNA tags in rice genome
-
Chen, S., W. Jin, M. Wang, F. Zhang, J. Zhou, Q. Jia, Y. Wu, F. Liu and P. Wu (2003) Distribution and characterization of over 1000 TDNA tags in rice genome. Plant J. 36: 105-113.
-
(2003)
Plant J
, vol.36
, pp. 105-113
-
-
Chen, S.1
Jin, W.2
Wang, M.3
Zhang, F.4
Zhou, J.5
Jia, Q.6
Wu, Y.7
Liu, F.8
Wu, P.9
-
8
-
-
33748323138
-
Epigenetic regulation of the rice retrotransposon Tos17
-
Cheng, C., M. Daigen and H. Hirochika (2006) Epigenetic regulation of the rice retrotransposon Tos17. Mol. Genet. Genomics 276: 378-390.
-
(2006)
Mol. Genet. Genomics
, vol.276
, pp. 378-390
-
-
Cheng, C.1
Daigen, M.2
Hirochika, H.3
-
9
-
-
35348971560
-
A rice phenomics studyphenotype scoring and seed propagation of a T-DNA insertioninduced rice mutant population
-
Chern, C.G., M.J. Fan, S.M. Yu, A.L. Hour, P.C. Lu, Y.C. Lin, F.J. Wei, S.C. Huang, S. Chen, M.H. Lai et al. (2007) A rice phenomics studyphenotype scoring and seed propagation of a T-DNA insertioninduced rice mutant population. Plant Mol. Biol. 65: 427-438.
-
(2007)
Plant Mol. Biol
, vol.65
, pp. 427-438
-
-
Chern, C.G.1
Fan, M.J.2
Yu, S.M.3
Hour, A.L.4
Lu, P.C.5
Lin, Y.C.6
Wei, F.J.7
Huang, S.C.8
Chen, S.9
Lai, M.H.10
-
10
-
-
13444259660
-
A bidirectional gene trap construct suitable for T-DNA and Dsmediated insertional mutagenesis in rice (Oryza sativa L.)
-
Eamens, A.L., C.L. Blanchard, E.S. Dennis and N.M. Upadhyaya (2004) A bidirectional gene trap construct suitable for T-DNA and Dsmediated insertional mutagenesis in rice (Oryza sativa L.). Plant Biotechnol. J. 2: 367-380.
-
(2004)
Plant Biotechnol. J
, vol.2
, pp. 367-380
-
-
Eamens, A.L.1
Blanchard, C.L.2
Dennis, E.S.3
Upadhyaya, N.M.4
-
11
-
-
61849182565
-
Studies on rice seed quality through analysis of a large-scale T-DNA insertion population
-
Fu, F.F., R. Ye, S.P. Xu and H.W. Xue (2009) Studies on rice seed quality through analysis of a large-scale T-DNA insertion population. Cell Res. 19: 380-391.
-
(2009)
Cell Res
, vol.19
, pp. 380-391
-
-
Fu, F.F.1
Ye, R.2
Xu, S.P.3
Xue, H.W.4
-
12
-
-
33646943255
-
Function and characterization of starch synthase I using mutants in rice
-
Fujita, N., M. Yoshida, N. Asakura, T. Ohdan, A. Miyao, H. Hirochika and Y. Nakamura (2006) Function and characterization of starch synthase I using mutants in rice. Plant Physiol. 140: 1070-1084.
-
(2006)
Plant Physiol
, vol.140
, pp. 1070-1084
-
-
Fujita, N.1
Yoshida, M.2
Asakura, N.3
Ohdan, T.4
Miyao, A.5
Hirochika, H.6
Nakamura, Y.7
-
13
-
-
34547888719
-
Characterization of SSIIIa-deficient mutants of rice: The function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm
-
Fujita, N., M. Yoshida, T. Kondo, K. Saito, Y. Utsumi, T. Tokunaga, A. Nishi, H. Satoh, J-H. Park, J-L. Jane et al. (2007) Characterization of SSIIIa-deficient mutants of rice: The function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm. Plant Physiol. 144: 2009-2023.
-
(2007)
Plant Physiol
, vol.144
, pp. 2009-2023
-
-
Fujita, N.1
Yoshida, M.2
Kondo, T.3
Saito, K.4
Utsumi, Y.5
Tokunaga, T.6
Nishi, A.7
Satoh, H.8
Park, J.-H.9
Jane, J.-L.10
-
14
-
-
78751512476
-
Germplasm enhancement by developing advanced plant materials from diverse rice accessions
-
Fukuoka, S., Y. Nonoue and M. Yano (2010) Germplasm enhancement by developing advanced plant materials from diverse rice accessions. Breed. Sci. 60: 509-517.
-
(2010)
Breed. Sci
, vol.60
, pp. 509-517
-
-
Fukuoka, S.1
Nonoue, Y.2
Yano, M.3
-
15
-
-
84920054691
-
T-DNA insertion mutants as a resource for rice functional genomics
-
In: Upadhyaya, N.M. (ed.), Springer, New York
-
Guiderdoni, E., G. An, S.-M. Yu, Y.-I. Hsing and C. Wu (2007) T-DNA insertion mutants as a resource for rice functional genomics. In: Upadhyaya, N.M. (ed.) Rice Functional Genomics-Challenges, Progress and Prospects, Springer, New York, pp. 181-221.
-
(2007)
Rice Functional Genomics-Challenges, Progress and Prospects
, pp. 181-221
-
-
Guiderdoni, E.1
An, G.2
Yu, S.-M.3
Hsing, Y.-I.4
Wu, C.5
-
16
-
-
58549108027
-
Arbuscular mycorrhiza specific signaling in rice transcends the common symbiosis signaling pathway
-
Gutjahr, C., M. Banba, V. Croset, K. An, A. Miyao, G. An, H. Hirochika, H. Imaizumi-Anraku and U. Paszkowski (2008) Arbuscular mycorrhiza specific signaling in rice transcends the common symbiosis signaling pathway. Plant Cell 20: 2989-3005.
-
(2008)
Plant Cell
, vol.20
, pp. 2989-3005
-
-
Gutjahr, C.1
Banba, M.2
Croset, V.3
An, K.4
Miyao, A.5
An, G.6
Hirochika, H.7
Imaizumi-Anraku, H.8
Paszkowski, U.9
-
17
-
-
0027168422
-
Activation of tobacco retrotransposons during tissue culture
-
Hirochika, H. (1993) Activation of tobacco retrotransposons during tissue culture. EMBO J. 12: 2521-2528.
-
(1993)
EMBO J
, vol.12
, pp. 2521-2528
-
-
Hirochika, H.1
-
18
-
-
0029824259
-
Retrotransposons of rice involved in mutations induced by tissue culture
-
Hirochika, H., K. Sugimoto, Y. Otsuki, H. Tsugawa and M. Kanda (1996) Retrotransposons of rice involved in mutations induced by tissue culture. Proc. Natl. Acad. Sci. USA 93: 7783-7788.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7783-7788
-
-
Hirochika, H.1
Sugimoto, K.2
Otsuki, Y.3
Tsugawa, H.4
Kanda, M.5
-
19
-
-
0031238581
-
Retrotransposons of rice: Their regulation and use for genome analysis
-
Hirochika, H. (1997) Retrotransposons of rice: their regulation and use for genome analysis. Plant Mol. Biol. 35: 231-240.
-
(1997)
Plant Mol. Biol
, vol.35
, pp. 231-240
-
-
Hirochika, H.1
-
20
-
-
0035115215
-
Contribution of the Tos17 retrotransposon to rice functional genomics
-
Hirochika, H. (2001) Contribution of the Tos17 retrotransposon to rice functional genomics. Curr. Opin. Plant Biol. 4: 118-122.
-
(2001)
Curr. Opin. Plant Biol
, vol.4
, pp. 118-122
-
-
Hirochika, H.1
-
21
-
-
4043125298
-
Rice mutant resources for gene discovery
-
Hirochika, H., E. Guiderdoni, G. An, Y. Hsing, M.Y. Eun, C. Han, N. Upadhyaya, S. Ramachandran, Q. Zhang, A. Pereira et al. (2004) Rice mutant resources for gene discovery. Plant Mol. Biol. 54: 325-334.
-
(2004)
Plant Mol. Biol
, vol.54
, pp. 325-334
-
-
Hirochika, H.1
Guiderdoni, E.2
An, G.3
Hsing, Y.4
Eun, M.Y.5
Han, C.6
Upadhyaya, N.7
Ramachandran, S.8
Zhang, Q.9
Pereira, A.10
-
22
-
-
33846846363
-
A rice gene activation/ knockout mutant resource for high throughput functional genomics
-
Hsing, Y.I., C.G. Chern, M.J. Fan, P.C. Lu, K.T. Chen, S.F. Lo, P.K. Sun, S.L. Ho, K.W. Lee, Y.C. Wang et al. (2007) A rice gene activation/ knockout mutant resource for high throughput functional genomics. Plant Mol. Biol. 63: 351-364.
-
(2007)
Plant Mol. Biol
, vol.63
, pp. 351-364
-
-
Hsing, Y.I.1
Chern, C.G.2
Fan, M.J.3
Lu, P.C.4
Chen, K.T.5
Lo, S.F.6
Sun, P.K.7
Ho, S.L.8
Lee, K.W.9
Wang, Y.C.10
-
23
-
-
34250885760
-
Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth
-
Horie, T., A. Costa, T.H. Kim, M.J. Han, R. Horie, H.-Y. Leung, A. Miyao, H. Hirochika, G. An and J.I. Schroeder (2007) Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth. EMBO J. 26: 3003-3014.
-
(2007)
EMBO J
, vol.26
, pp. 3003-3014
-
-
Horie, T.1
Costa, A.2
Kim, T.H.3
Han, M.J.4
Horie, R.5
Leung, H.-Y.6
Miyao, A.7
Hirochika, H.8
An, G.9
Schroeder, J.I.10
-
24
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
25
-
-
0033918191
-
T-DNA insertional mutagenesis for functional genomics in rice
-
Jeon, J.S., S. Lee, K.H. Jung, S.H. Jun, D.H. Jeong, J. Lee, C. Kim, S. Jang, K. Yang, J. Nam et al. (2000) T-DNA insertional mutagenesis for functional genomics in rice. Plant J. 22: 561-570.
-
(2000)
Plant J
, vol.22
, pp. 561-570
-
-
Jeon, J.S.1
Lee, S.2
Jung, K.H.3
Jun, S.H.4
Jeong, D.H.5
Lee, J.6
Kim, C.7
Jang, S.8
Yang, K.9
Nam, J.10
-
26
-
-
0346034923
-
An active DNA transposon family in rice
-
Jiang, N., Z. Bao, X. Zhang, H. Hirochika, S.R. Eddy, S.R. McCouch and S.R. Wessler (2003) An active DNA transposon family in rice. Nature 421: 163-167.
-
(2003)
Nature
, vol.421
, pp. 163-167
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Hirochika, H.4
Eddy, S.R.5
McCouch, S.R.6
Wessler, S.R.7
-
27
-
-
0038347231
-
Characterization of a rice chlorophylldeficient mutant using the T-DNA gene-trap system
-
Jung, K.H., J. Hur, C.H. Ryu, Y. Choi, Y.Y. Chung, A. Miyao, H. Hirochika and G. An (2003) Characterization of a rice chlorophylldeficient mutant using the T-DNA gene-trap system. Plant Cell Physiol. 44: 463-472.
-
(2003)
Plant Cell Physiol
, vol.44
, pp. 463-472
-
-
Jung, K.H.1
Hur, J.2
Ryu, C.H.3
Choi, Y.4
Chung, Y.Y.5
Miyao, A.6
Hirochika, H.7
An, G.8
-
28
-
-
38349085100
-
Towards a better bowl of rice: Assigning function to tens of thousands of rice genes. Nat
-
Jung, K.H., G. An and P.C. Ronald (2008) Towards a better bowl of rice: assigning function to tens of thousands of rice genes. Nat. Rev. Genet. 9: 91-101.
-
(2008)
Rev. Genet
, vol.9
, pp. 91-101
-
-
Jung, K.H.1
An, G.2
Ronald, P.C.3
-
29
-
-
10744232079
-
Loss-of-function mutations of the rice GAMYB gene impair the α-amylase expression in aleurone and flower development
-
Kaneko, M., Y. Inukai, M. Ueguchi-Tanaka, H. Itoh, T. Izawa, Y. Kobayashi, T. Hattori, A. Miyao, H. Hirochika, M. Ashikari et al. (2004) Loss-of-function mutations of the rice GAMYB gene impair the α-amylase expression in aleurone and flower development. Plant Cell 16: 33-44.
-
(2004)
Plant Cell
, vol.16
, pp. 33-44
-
-
Kaneko, M.1
Inukai, Y.2
Ueguchi-Tanaka, M.3
Itoh, H.4
Izawa, T.5
Kobayashi, Y.6
Hattori, T.7
Miyao, A.8
Hirochika, H.9
Ashikari, M.10
-
30
-
-
0037624063
-
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
-
Kikuchi, S., K. Satoh, T. Nagata, N. Kawagashira, K. Doi, N. Kishimoto, J. Yazaki, M. Ishikawa, H. Yamada, H. Ooka et al. (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301: 376-379.
-
(2003)
Science
, vol.301
, pp. 376-379
-
-
Kikuchi, S.1
Satoh, K.2
Nagata, T.3
Kawagashira, N.4
Doi, K.5
Kishimoto, N.6
Yazaki, J.7
Ishikawa, M.8
Yamada, H.9
Ooka, H.10
-
31
-
-
3242683596
-
Rapid, large-scale generation of Ds transposant lines and analysis of the Ds insertion sites in rice
-
Kim, C.M., H.L. Piao, S.J. Park, N.S. Chon, B.I. Je, B. Sun, S.H. Park, J.Y. Park, E.J. Lee, M.J. Kim et al. (2004) Rapid, large-scale generation of Ds transposant lines and analysis of the Ds insertion sites in rice. Plant J. 39: 252-263.
-
(2004)
Plant J
, vol.39
, pp. 252-263
-
-
Kim, C.M.1
Piao, H.L.2
Park, S.J.3
Chon, N.S.4
Je, B.I.5
Sun, B.6
Park, S.H.7
Park, J.Y.8
Lee, E.J.9
Kim, M.J.10
-
32
-
-
77955697556
-
A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis
-
Kishi-Kaboshi, M., K. Okada, L. Kurimoto, S. Murakami, T. Umezawa, N. Shibuya, H. Yamane, A. Miyao, H. Takatsuji, A. Takahashi et al. (2010) A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis. Plant J. 63: 599-612.
-
(2010)
Plant J
, vol.63
, pp. 599-612
-
-
Kishi-Kaboshi, M.1
Okada, K.2
Kurimoto, L.3
Murakami, S.4
Umezawa, T.5
Shibuya, N.6
Yamane, H.7
Miyao, A.8
Takatsuji, H.9
Takahashi, A.10
-
33
-
-
9144244212
-
Establishing an efficient Ac/Ds tagging system in rice: Large-scale analysis of Ds flanking sequences
-
Kolesnik, T., I. Szeverenyi, D. Bachmann, C.S. Kumar, S. Jiang, R. Ramamoorthy, M. Cai, Z.G. Ma, V. Sundaresan and S. Ramachandran (2004) Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences. Plant J. 37: 301-314.
-
(2004)
Plant J
, vol.37
, pp. 301-314
-
-
Kolesnik, T.1
Szeverenyi, I.2
Bachmann, D.3
Kumar, C.S.4
Jiang, S.5
Ramamoorthy, R.6
Cai, M.7
Ma, Z.G.8
Sundaresan, V.9
Ramachandran, S.10
-
34
-
-
0347755545
-
Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: Its status in 2003
-
Komatsu, S., K. Kojima, K. Suzuki, K. Ozaki and K. Higo (2004) Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003. Nucleic Acids Res. 32: D388-D392.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Komatsu, S.1
Kojima, K.2
Suzuki, K.3
Ozaki, K.4
Higo, K.5
-
35
-
-
61349141170
-
Systematic approaches to using the FOX hunting system to identify useful rice genes
-
Kondou, Y., M. Higuchi, S. Takahashi, T. Sakurai, T. Ichikawa, H. Kuroda, T. Yoshizumi, Y. Tsumoto, Y. Horii, M. Kawashima et al. (2009) Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant J. 57: 883-894.
-
(2009)
Plant J
, vol.57
, pp. 883-894
-
-
Kondou, Y.1
Higuchi, M.2
Takahashi, S.3
Sakurai, T.4
Ichikawa, T.5
Kuroda, H.6
Yoshizumi, T.7
Tsumoto, Y.8
Horii, Y.9
Kawashima, M.10
-
36
-
-
58449093788
-
Mutant resources in rice for functional genomics of the grasses
-
Krishnan, A., E. Guiderdoni, G. An, Y-i.C. Hsing, C-d. Han, M.C. Lee, S-M. Yu, N. Upadhyaya, S. Ramachandran, Q. Zhang et al. (2009) Mutant resources in rice for functional genomics of the grasses. Plant Physiol. 149: 165-170.
-
(2009)
Plant Physiol
, vol.149
, pp. 165-170
-
-
Krishnan, A.1
Guiderdoni, E.2
An, G.3
Hsing, Y.-I.C.4
Han, C-D.5
Lee, M.C.6
Yu, S.-M.7
Upadhyaya, N.8
Ramachandran, S.9
Zhang, Q.10
-
37
-
-
0035206133
-
Application of retrotransposons as genetic tools in plant biology
-
Kumar, A. and H. Hirochika (2001) Application of retrotransposons as genetic tools in plant biology. Trends Plant Sci. 6: 127-134.
-
(2001)
Trends Plant Sci
, vol.6
, pp. 127-134
-
-
Kumar, A.1
Hirochika, H.2
-
38
-
-
21244456133
-
Identification of a putative voltage-gated Ca2+ channel as a key regulator of elicitor-induced hypersensitive cell death and mitogenactivated protein kinase activation in rice
-
Kurusu, T., T. Yagala, A. Miyao, H. Hirochika and K. Kuchitsu (2005) Identification of a putative voltage-gated Ca2+ channel as a key regulator of elicitor-induced hypersensitive cell death and mitogenactivated protein kinase activation in rice. Plant J. 42: 798-809.
-
(2005)
Plant J
, vol.42
, pp. 798-809
-
-
Kurusu, T.1
Yagala, T.2
Miyao, A.3
Hirochika, H.4
Kuchitsu, K.5
-
39
-
-
38549146472
-
Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library
-
Larmande, P., C. Gay, M. Lorieux, C. Périn, M. Bouniol, G. Droc, C. Sallaud, P. Perez, I. Barnola, C. Biderre-Petit et al. (2008) Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library. Nucleic Acids Res. 36: D1022-1027.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Larmande, P.1
Gay, C.2
Lorieux, M.3
Périn, C.4
Bouniol, M.5
Droc, G.6
Sallaud, C.7
Perez, P.8
Barnola, I.9
Biderre-Petit, C.10
-
40
-
-
0041419305
-
Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome
-
Miyao, A., K. Tanaka, K. Murata, H. Sawaki, S. Takeda, K. Abe, Y. Shinozuka, K. Onosato and H. Hirochika (2003) Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome. Plant Cell 15: 1771-1780.
-
(2003)
Plant Cell
, vol.15
, pp. 1771-1780
-
-
Miyao, A.1
Tanaka, K.2
Murata, K.3
Sawaki, H.4
Takeda, S.5
Abe, K.6
Shinozuka, Y.7
Onosato, K.8
Hirochika, H.9
-
41
-
-
33847326948
-
A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes
-
Miyao, A., Y. Iwasaki, H. Kitano, J. Itoh, M. Maekawa, K. Murata, O. Yatou, Y. Nagato and H. Hirochika (2007) A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes. Plant Mol. Biol. 63: 625-635.
-
(2007)
Plant Mol. Biol
, vol.63
, pp. 625-635
-
-
Miyao, A.1
Iwasaki, Y.2
Kitano, H.3
Itoh, J.4
Maekawa, M.5
Murata, K.6
Yatou, O.7
Nagato, Y.8
Hirochika, H.9
-
42
-
-
35348934989
-
A genome-wide gain-of-function analysis of rice genes using the FOX-hunting system
-
Nakamura, H., M. Hakata, K. Amano, A. Miyao, N. Toki, M. Kajikawa, J. Pang, N. Higashi, S. Ando, S. Toki et al. (2007) A genome-wide gain-of-function analysis of rice genes using the FOX-hunting system. Plant Mol. Biol. 65: 357-371.
-
(2007)
Plant Mol. Biol
, vol.65
, pp. 357-371
-
-
Nakamura, H.1
Hakata, M.2
Amano, K.3
Miyao, A.4
Toki, N.5
Kajikawa, M.6
Pang, J.7
Higashi, N.8
Ando, S.9
Toki, S.10
-
43
-
-
0042922499
-
The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice
-
Nonomura, K.I., K. Miyoshi, M. Eiguchi, T. Suzuki, A. Miyao, H. Hirochika and N. Kurata (2003) The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice. Plant Cell 15: 1728-1739.
-
(2003)
Plant Cell
, vol.15
, pp. 1728-1739
-
-
Nonomura, K.I.1
Miyoshi, K.2
Eiguchi, M.3
Suzuki, T.4
Miyao, A.5
Hirochika, H.6
Kurata, N.7
-
44
-
-
1842712462
-
The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis
-
Nonomura, K.I., M. Nakano, T. Fukuda, M. Eiguchi, A. Miyao, H. Hirochika and N. Kurata (2004) The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis. Plant Cell 16: 1008-1020.
-
(2004)
Plant Cell
, vol.16
, pp. 1008-1020
-
-
Nonomura, K.I.1
Nakano, M.2
Fukuda, T.3
Eiguchi, M.4
Miyao, A.5
Hirochika, H.6
Kurata, N.7
-
45
-
-
35348889711
-
A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice
-
Nonomura, K.I., A. Morohoshi, M. Nakano, M. Eiguchi, A. Miyao, H. Hirochika and N. Kurata (2007) A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell 19: 2583-2594.
-
(2007)
Plant Cell
, vol.19
, pp. 2583-2594
-
-
Nonomura, K.I.1
Morohoshi, A.2
Nakano, M.3
Eiguchi, M.4
Miyao, A.5
Hirochika, H.6
Kurata, N.7
-
46
-
-
66249131678
-
Identification of an active LTR retrotransposon in rice
-
Picault, N., C. Chaparro, B. Piegu, W. Stenger, D. Formey, C. Llauro, J. Descombin, F. Sabot, E. Lasserre, D. Meynard et al. (2009) Identification of an active LTR retrotransposon in rice. Plant J. 58: 754-765.
-
(2009)
Plant J
, vol.58
, pp. 754-765
-
-
Picault, N.1
Chaparro, C.2
Piegu, B.3
Stenger, W.4
Formey, D.5
Llauro, C.6
Descombin, J.7
Sabot, F.8
Lasserre, E.9
Meynard, D.10
-
47
-
-
35448983932
-
Largescale characterization of Tos17 insertion sites in a rice T-DNA mutant library
-
Piffanelli, P., G. Droc, D. Mieulet, N. Lanau, M. Bes, E. Bourgeois, C. Rouviere, F. Gavory, C. Cruaud, A. Ghesquiere et al. (2007) Largescale characterization of Tos17 insertion sites in a rice T-DNA mutant library. Plant Mol. Biol. 65: 587-601.
-
(2007)
Plant Mol. Biol
, vol.65
, pp. 587-601
-
-
Piffanelli, P.1
Droc, G.2
Mieulet, D.3
Lanau, N.4
Bes, M.5
Bourgeois, E.6
Rouviere, C.7
Gavory, F.8
Cruaud, C.9
Ghesquiere, A.10
-
48
-
-
33846857991
-
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
-
Rice Annotation Project
-
Rice Annotation Project (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res. 17: 175-183.
-
(2007)
Genome Res
, vol.17
, pp. 175-183
-
-
-
49
-
-
11144356535
-
An overview of gibberellin metabolism enzyme genes and their related mutants in rice
-
Sakamoto, T., K. Miura, H. Itoh, T. Tatsumi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, G.K. Agrawal, S. Takeda, K. Abe et al. (2004) An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiol. 134: 1642-1653.
-
(2004)
Plant Physiol
, vol.134
, pp. 1642-1653
-
-
Sakamoto, T.1
Miura, K.2
Itoh, H.3
Tatsumi, T.4
Ueguchi-Tanaka, M.5
Ishiyama, K.6
Kobayashi, M.7
Agrawal, G.K.8
Takeda, S.9
Abe, K.10
-
50
-
-
3843065475
-
High throughput T-DNA insertion mutagenesis in rice: A first step towards in silico reverse genetics
-
Sallaud, C., C. Gay, P. Larmande, M. Bes, P. Piffanelli, B. Piegu, G. Droc, F. Regad, E. Bourgeois, D. Meynard et al. (2004) High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J. 39: 450-464.
-
(2004)
Plant J
, vol.39
, pp. 450-464
-
-
Sallaud, C.1
Gay, C.2
Larmande, P.3
Bes, M.4
Piffanelli, P.5
Piegu, B.6
Droc, G.7
Regad, F.8
Bourgeois, E.9
Meynard, D.10
-
51
-
-
0033558369
-
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants
-
Sato, Y., N. Sentoku, Y. Miura, H. Hirochika, H. Kitano and M. Matsuoka (1999) Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO J. 15: 992-1002.
-
(1999)
EMBO J
, vol.15
, pp. 992-1002
-
-
Sato, Y.1
Sentoku, N.2
Miura, Y.3
Hirochika, H.4
Kitano, H.5
Matsuoka, M.6
-
52
-
-
77950530033
-
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
-
Sugimoto, K., Y. Takeuchi, K. Ebana, A. Miyao, H. Hirochika, N. Hara, K. Ishiyama, M. Kobayashi, Y. Ban, T. Hattori et al. (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc. Natl. Acad. Sci. USA 107: 5792-5797.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 5792-5797
-
-
Sugimoto, K.1
Takeuchi, Y.2
Ebana, K.3
Miyao, A.4
Hirochika, H.5
Hara, N.6
Ishiyama, K.7
Kobayashi, M.8
Ban, Y.9
Hattori, T.10
-
53
-
-
39149096275
-
MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol. Genet
-
Suzuki, T., M. Eiguchi, T. Kumamaru, H. Satoh, H. Matsusaka, K. Moriguchi, Y. Nagato and N. Kurata (2008) MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol. Genet. Genomics 279: 213-223.
-
(2008)
Genomics
, vol.279
, pp. 213-223
-
-
Suzuki, T.1
Eiguchi, M.2
Kumamaru, T.3
Satoh, H.4
Matsusaka, H.5
Moriguchi, K.6
Nagato, Y.7
Kurata, N.8
-
54
-
-
35748984121
-
Rice Pti1a negatively regulates RAR1-dependent defense responses
-
Takahashi, A., G.K. Agrawal, M. Yamazaki, K. Onosato, A. Miyao, T. Kawasaki, K. Shimamoto and H. Hirochika (2007) Rice Pti1a negatively regulates RAR1-dependent defense responses. Plant Cell 19: 2940-2951.
-
(2007)
Plant Cell
, vol.19
, pp. 2940-2951
-
-
Takahashi, A.1
Agrawal, G.K.2
Yamazaki, M.3
Onosato, K.4
Miyao, A.5
Kawasaki, T.6
Shimamoto, K.7
Hirochika, H.8
-
55
-
-
77955500909
-
Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging
-
In press
-
Takahashi, A., N. Hayashi, A. Miyao and H. Hirochika (2010) Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging. BMC Plant Biol. In press.
-
(2010)
BMC Plant Biol
-
-
Takahashi, A.1
Hayashi, N.2
Miyao, A.3
Hirochika, H.4
-
56
-
-
0035056523
-
Isolation and characterization of rice phytochrome A mutants
-
Takano, M., H. Kanegae, T. Shinomura, A. Miyao, H. Hirochika and M. Furuya (2001) Isolation and characterization of rice phytochrome A mutants. Plant Cell 13: 521-534.
-
(2001)
Plant Cell
, vol.13
, pp. 521-534
-
-
Takano, M.1
Kanegae, H.2
Shinomura, T.3
Miyao, A.4
Hirochika, H.5
Furuya, M.6
-
57
-
-
33644828238
-
Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice
-
Takano, M., N. Inagaki, X. Xie, N. Yuzurihara, F. Hihara, T. Ishizuka, M. Yano, M. Nishimura, A. Miyao, H. Hirochika et al. (2005) Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice. Plant Cell 17: 3311-3325.
-
(2005)
Plant Cell
, vol.17
, pp. 3311-3325
-
-
Takano, M.1
Inagaki, N.2
Xie, X.3
Yuzurihara, N.4
Hihara, F.5
Ishizuka, T.6
Yano, M.7
Nishimura, M.8
Miyao, A.9
Hirochika, H.10
-
58
-
-
0141787882
-
Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall
-
Tanaka, K., K. Murata, M. Yamazaki, K. Onosato, A. Miyao and H. Hirochika (2003) Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol. 133: 73-83.
-
(2003)
Plant Physiol
, vol.133
, pp. 73-83
-
-
Tanaka, K.1
Murata, K.2
Yamazaki, M.3
Onosato, K.4
Miyao, A.5
Hirochika, H.6
-
59
-
-
34247572994
-
Discovery of chemically induced mutations in rice by TILLING
-
Till, B.J., J. Cooper, T.H. Tai, P. Colowit, E.A. Greene, S. Henikoff and L. Comai (2007) Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol. 11: 7-19.
-
(2007)
BMC Plant Biol
, vol.11
, pp. 7-19
-
-
Till, B.J.1
Cooper, J.2
Tai, T.H.3
Colowit, P.4
Greene, E.A.5
Henikoff, S.6
Comai, L.7
-
60
-
-
1542647264
-
Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin
-
To, J.P.C., G. Haberer, F.J. Ferreira, J. Deruere, M.G. Mason, G.E. Schaller, J.M. Alonso, J.R. Ecker and J.J. Kieber (2004) Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin. Plant Cell 16: 658-671.
-
(2004)
Plant Cell
, vol.16
, pp. 658-671
-
-
To, J.P.C.1
Haberer, G.2
Ferreira, F.J.3
Deruere, J.4
Mason, M.G.5
Schaller, G.E.6
Alonso, J.M.7
Ecker, J.R.8
Kieber, J.J.9
-
61
-
-
72449167897
-
A combinatorial interplay among the 1-amino-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana
-
Tsuchisaka, A., G. Yu, H. Jin, J. Alonso, J. Ecker, X. Zhang, S. Gao and A. Theologis (2009) A combinatorial interplay among the 1-amino-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics 183: 979-1003.
-
(2009)
Genetics
, vol.183
, pp. 979-1003
-
-
Tsuchisaka, A.1
Yu, G.2
Jin, H.3
Alonso, J.4
Ecker, J.5
Zhang, X.6
Gao, S.7
Theologis, A.8
-
62
-
-
33644861343
-
An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice
-
Tsugane, K., M. Maekawa, K. Takagi, H. Takahara, Q. Qian, C.H. Eun and S. Iida (2006) An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. Plant J. 45: 46-57.
-
(2006)
Plant J
, vol.45
, pp. 46-57
-
-
Tsugane, K.1
Maekawa, M.2
Takagi, K.3
Takahara, H.4
Qian, Q.5
Eun, C.H.6
Iida, S.7
-
63
-
-
44849126727
-
Generation of a 3D indexed Petunia insertion database for reverse genetics
-
Vandenbussche, M., A. Janssen, J. Zethof, N. van Orsouw, J. Peters, M.J.van Eijk, A.S. Rijpkema, H. Schneiders, P. Santhanam, M. de Been et al. (2008) Generation of a 3D indexed Petunia insertion database for reverse genetics. Plant J. 54: 1105-1114.
-
(2008)
Plant J
, vol.54
, pp. 1105-1114
-
-
Vandenbussche, M.1
Janssen, A.2
Zethof, J.3
van Orsouw, N.4
Peters, J.5
van Eijk, M.J.6
Rijpkema, A.S.7
Schneiders, H.8
Santhanam, P.9
de Been, M.10
-
64
-
-
26444581772
-
EU-OSTID: A collection of transposon insertional mutants for functional genomics in rice. Plant Mol
-
van Enckevort, L.J., G. Droc, P. Piffanelli, R. Greco, C. Gagneur, C. Weber, V.M. González, P. Cabot, F. Fornara and S. Berri (2005) EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice. Plant Mol. Biol. 59: 99-110.
-
(2005)
Biol
, vol.59
, pp. 99-110
-
-
van Enckevort, L.J.1
Droc, G.2
Piffanelli, P.3
Greco, R.4
Gagneur, C.5
Weber, C.6
González, V.M.7
Cabot, P.8
Fornara, F.9
Berri, S.10
-
65
-
-
33645752186
-
Functional diversification of the two C-class genes, OsMADS3 and OsMADS58, in Oryza sativa
-
Yamaguchi, T., D.Y. Lee, A. Miyao, H. Hirochika, G. An and H. Hirano (2006) Functional diversification of the two C-class genes, OsMADS3 and OsMADS58, in Oryza sativa. Plant Cell 18: 15-28.
-
(2006)
Plant Cell
, vol.18
, pp. 15-28
-
-
Yamaguchi, T.1
Lee, D.Y.2
Miyao, A.3
Hirochika, H.4
An, G.5
Hirano, H.6
-
66
-
-
59149100214
-
Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus
-
Yoshii, M., T. Shimizu, M. Yamazaki, T. Higashi, A. Miyao, H. Hirochika and T. Omura (2009) Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus. Plant J. 57: 615-625.
-
(2009)
Plant J
, vol.57
, pp. 615-625
-
-
Yoshii, M.1
Shimizu, T.2
Yamazaki, M.3
Higashi, T.4
Miyao, A.5
Hirochika, H.6
Omura, T.7
-
67
-
-
77950103601
-
The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling
-
Yoshii, M., M. Yamazaki, R. Rakwal, M. Kishi-Kaboshi, A. Miyao and H. Hirochika (2010) The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling. Plant J. 61: 804-815.
-
(2010)
Plant J
, vol.61
, pp. 804-815
-
-
Yoshii, M.1
Yamazaki, M.2
Rakwal, R.3
Kishi-Kaboshi, M.4
Miyao, A.5
Hirochika, H.6
-
68
-
-
28244445008
-
RMD: A rice mutant database for functional analysis of the rice genome
-
Zhang, J., C. Li, C. Wu, L. Xiong, G. Chen, Q. Zhang and S. Wang (2006) RMD: a rice mutant database for functional analysis of the rice genome. Nucleic Acids Res. 34: D745-748.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Zhang, J.1
Li, C.2
Wu, C.3
Xiong, L.4
Chen, G.5
Zhang, Q.6
Wang, S.7
-
69
-
-
84919967747
-
Transposon insertional mutants: A resource for rice functional genomics
-
In: Upadhyaya, N.M. (ed.), Progress and Prospects, Springer, New York
-
Zhu, Q.H., M.Y. Eun, C.D. Han, C.S. Kumar, A. Pereira, S. Ramachandran, V. Sundaresan, A.L. Eamens, N.M. Upadhyaya and R. Wu (2007) Transposon insertional mutants: a resource for rice functional genomics. In: Upadhyaya, N.M. (ed.) Rice Functional Genomics-Challenges, Progress and Prospects, Springer, New York, pp. 223-271.
-
(2007)
Rice Functional Genomics-Challenges
, pp. 223-271
-
-
Zhu, Q.H.1
Eun, M.Y.2
Han, C.D.3
Kumar, C.S.4
Pereira, A.5
Ramachandran, S.6
Sundaresan, V.7
Eamens, A.L.8
Upadhyaya, N.M.9
Wu, R.10
|