Fijiwings: An open source toolkit for semiautomated morphometric analysis of insect wings

G3: Genes, Genomes, Genetics

Volumn 3, Issue 8, 2013, Pages 1443-1449

  Dobens, Alexander C ^a   Dobens, Leonard L ^a  

^a UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

Author keywords

Compartment; Drosophila; Engrailed; Fiji; Growth; Imagej; Posterior; Proliferation; Trichome; Wing

Indexed keywords

TRANSCRIPTION FACTOR GAL4;

ANIMAL; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; AUTOMATION; CELL SIZE; COMPUTER INTERFACE; COMPUTER PROGRAM; DENSITY; DROSOPHILA; ENGRAILED; FEMALE; FIJI; FORELIMB; GROWTH; GROWTH, DEVELOPMENT AND AGING; HEAT; IMAGEJ; INSECT; INTERNET; METABOLISM; MICROPHOTOGRAPHY; MORPHOGENESIS; MORPHOMETRICS; NONHUMAN; POSTERIOR COMPARTMENT; PROLIFERATION; TISSUE GROWTH; TRICHOME; VEIN;

HEXAPODA;

DROSOPHILA; ENGRAILED; FIJI; GROWTH; IMAGEJ; POSTERIOR COMPARTMENT; PROLIFERATION; TRICHOME; WING;

ANIMALS; AUTOMATION; DROSOPHILA; INTERNET; MORPHOGENESIS; SOFTWARE; USER-COMPUTER INTERFACE; WING;

EID: 84883250213     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.113.006676     Document Type: Article

References (52)

1. Bohni, R., J. Riesgo-Escovar, S. Oldham, W. Brogiolo, H. Stocker et al., 1999 Autonomous control of cell and organ size by CHICO, a Drosophila homolog of vertebrate IRS1-4. Cell 97: 865-875.
2. Brand, A., and N. Perrimon, 1994 Raf acts downstream of the EGF receptor to determine dorsoventral polarity during Drosophila oogenesis. Genes Dev. 8: 629-639.
3. Burke, R., and K. Basler, 1996 Dpp receptors are autonomously required for cell proliferation in the entire developing Drosophila wing. Development 122: 2261-2269.
4. Caldwell, P. E., M. Walkiewicz, and M. Stern, 2005 Ras activity in the Drosophila prothoracic gland regulates body size and developmental rate via ecdysone release. Curr. Biol. 15: 1785-1795.
5. Carreira, V. P., I. M. Soto, J. Mensch, and J. Fanara, 2011 Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and nonallometric effects of shape variation. BMC Dev. Biol. 11: 32.
6. Chen, C. M., and G. Struhl, 1999 Wingless transduction by the Frizzled and Frizzled2 proteins of Drosophila. Development 126: 5441-5452.
7. Chiang, C., Y. Litingtung, E. Lee, K. E. Young, J. L. Corden et al., 1996 Cyclopia and defective axial patterning in mice lacking Sonic hedgehog gene function. Nature 383: 407-413.
8. Colombani, J., L. Bianchini, S. Layalle, E. Pondeville, C. Dauphin-Villemant et al., 2005 Antagonistic actions of ecdysone and insulins determine final size in Drosophila. Science 310: 667-670.
9. Conlon, I., and M. Raff, 1999 Size control in animal development. Cell 96: 235-244.
10. Crozatier, M., B. Glise, and A. Vincent, 2004 Patterns in evolution: veins of the Drosophila wing. Trends Genet. 20: 498-505.
11. De Celis, J. F., 2003 Pattern formation in the Drosophila wing: the development of the veins. Bioessays 25: 443-451.
12. Edgar, B. A., 2006 How flies get their size: genetics meets physiology. Nat. Rev. Genet. 7: 907-916.
13. Ehsani, A. H., and F. Quiel, 2008 Geomorphometric feature analysis using morphometric parameterization and artificial neural networks. Geomorphology 99: 1-4.
14. Favret, C., 2009 Wing morphometry helps diagnose cryptic species and resurrect Mindarus pinicolus (Hemiptera: Aphididae). Ann. Entomol. Soc. Am. 102: 970-981.
15. Francuski, L., A. Vujic, A. Kovacevic, J. Ludoski, and V. Milankov, 2009 Identification of the species of the Cheilosia variabilis group (Diptera, Syrphidae) from the Balkan Peninsula using wing geometric morphometrics, with the revision of status of C. melanopa redi Vujic, 1996eh. Contrib. Zool. 78: 129-140.
16. Frank, E., M. Hall, L. Trigg, G. Holmes, and I. H. Witten, 2004 Data mining in bioinformatics using Weka. Bioinformatics 20: 2479-2481.
17. Gao, X., T. P. Neufeld, and D. Pan, 2000 Drosophila PTEN regulates cell growth and proliferation through PI3K-dependent and -independent pathways. Dev. Biol. 221: 404-418.
18. Garcia-Bellido, A., F. Cortes, andM. Milan, 1994 Cell interactions in the control of size in Drosophila wings. Proc. Natl. Acad. Sci. USA 91: 10222-10226.
19. Gregory, S. L., T. Shandala, L. O'Keefe, L. Jones, M. J. Murray et al., 2007 A Drosophila overexpression screen for modifiers of Rho signalling in cytokinesis. Fly (Austin) 1: 13-22.
20. Hartwell, L. H., 1971 Genetic control of the cell division cycle in yeast. II. Genes controlling DNA replication and its initiation. J. Mol. Biol. 59: 183-194.
21. Held, L., 2002 Imaginal Discs: The Genetic and Cellular Logic of Pattern Formation (Developmental and Cell Biology Series), Cambridge University Press, New York.
22. Hidalgo, A., 1998 Growth and patterning from the engrailed interface. Int. J. Dev. Biol. 42: 317-324.
23. Houle, D., J. Mezey, P. Galpern, and A. Carter, 2003 Automated measurement of Drosophila wings. BMC Evol. Biol. 3: 25.
24. Johnston, G. C., J. R. Pringle, and L. H. Hartwell, 1977 Coordination of growth with cell division in the yeast Saccharomyces cerevisiae. Exp. Cell Res. 105: 79-98.
25. Johnston, L. A., and P. Gallant, 2002 Control of growth and organ size in Drosophila. Bioessays 24: 54-64.
26. Klingenberg, C. P., and N. A. Gidaszewski, 2010 Testing and quantifying phylogenetic signals and homoplasy in morphometric data. Syst. Biol. 59: 245-261.
27. Klingenberg, C. P., and S. D. Zaklan, 2000 Morphological integration between developmental compartments in the Drosophila wing. Evolution 54: 1273-1285.
28. Lecuit, T., W. J. Brook, M. Ng, M. Calleja, H. Sun et al., 1996 Two distinct mechanisms for long-range patterning by decapentaplegic in the Drosophila wing. Nature 381: 387-393.
29. Maloof, J. N., K. Nozue, M. R. Mumbach, and C. M. Palmer, 2013 LeafJ: an ImageJ plugin for semi-automated leaf shape measurement. J. Vis. Exp. 71.
30. Martin, F. A., and G. Morata, 2006 Compartments and the control of growth in the Drosophila wing imaginal disc. Development 133: 4421-4426.
31. Masoner, V., R. Das, L. Pence, G. Anand, H. Laferriere et al., 2013 The kinase domain of Drosophila Tribbles is required for turnover of fly C/EBP during cell migration. Dev. Biol. 375: 33-44.
32. Mata, J., S. Curado, A. Ephrussi, and P. Rorth, 2000 Tribbles coordinates mitosis and morphogenesis in Drosophila by regulating string/CDC25 proteolysis. Cell 101: 511-522.
33. Mirth, C., J. W. Truman, and L. M. Riddiford, 2005 The role of the prothoracic gland in determining critical weight for metamorphosis in Drosophila melanogaster. Curr. Biol. 15: 1796-1807.
34. Mirth, C. K., and L. M. Riddiford, 2007 Size assessment and growth control: how adult size is determined in insects. Bioessays 29: 344-355.
35. Mirth, C. K., and A. W. Shingleton, 2012 Integrating body and organ size in Drosophila: recent advances and outstanding problems. Front Endocrinol (Lausanne) 3: 49.
36. Muñoz-Muñoz, F., S. Talavera, and N. Pagès, 2011 Geometric morphometrics of the wing in the subgenus Culicoides (Diptera: Ceratopogonidae): from practical implications to evolutionary interpretations. J. Med. Entomol. 48: 129-139.
37. Neufeld, T. P., A. F. De La Cruz, L. A. Johnston, and B. A. Edgar, 1998 Coordination of growth and cell division in the Drosophila wing. Cell 93: 1183-1193.
38. Oldham, S., and E. Hafen, 2003 Insulin/IGF and target of rapamycin signaling: a TOR de force in growth control. Trends Cell Biol. 13: 79-85.
39. Oyerinde, A. A., M. C. Dike, O. O. Banwo, L. J. Bamaiyi, and R. S. Adamu, 2012 Morphometric and landmark based variations of Apis mellifera L. wings in the forest vegetation zone of Nigeria. Int. Res. J. Biochem. Bioinformatics 2: 193-199.
40. Pagan, S. M., M. A. Ros, C. Tabin, and J. F. Fallon, 1996 Surgical removal of limb bud Sonic hedgehog results in posterior skeletal defects. Dev. Biol. 180: 35-40.
41. Parker, J., 2011 Morphogens, nutrients, and the basis of organ scaling. Evol. Dev. 13: 304-314.
42. Perrimon, N., J. Q. Ni, and L. Perkins, 2010 In vivo RNAi: today and tomorrow. Cold Spring Harb. Perspect. Biol. 2: a003640.
43. Riddle, R. D., R. L. Johnson, E. Laufer, and C. Tabin, 1993 Sonic hedgehog mediates the polarizing activity of the ZPA. Cell 75: 1401-1416.
44. Schindelin, J., I. Arganda-Carreras, E. Frise, V. Kaynig, M. Longair et al., 2012 Fiji: an open-source platform for biological-image analysis. Nat. Methods 9: 676-682.
45. Schneider, C. A., W. S. Rasband, and K. W. Eliceiri, 2012 NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9: 671-675.
46. Shamir, L., J. D. Delaney, N. Orlov, D. M. Eckley, and I. G. Goldberg, 2010 Pattern recognition software and techniques for biological image analysis. PLOS Comput. Biol. 6: e1000974.
47. Shingleton, A. W., 2005 Body-size regulation: combining genetics and physiology. Curr. Biol. 15: R825-R827.
48. Strassburger, K., M. Tiebe, F. Pinna, K. Breuhahn, and A. A. Teleman, 2012 Insulin/IGF signaling drives cell proliferation in part via Yorkie/YAP. Dev. Biol. 367: 187-196.
49. Struhl, G., and K. Basler, 1993 Organizing activity of wingless protein in Drosophila. Cell 72: 527-540.
50. Tang, H. Y., M. S. Smith-Caldas, M. V. Driscoll, S. Salhadar, and A. W. Shingleton, 2011 FOXO regulates organ-specific phenotypic plasticity in Drosophila. PLoS Genet. 7: e1002373.
51. Vicente, J. L., C. A. Sousa, B. Alten, S. S. Caglar,, E. Falcutá et al., 2011 Genetic and phenotypic variation of the malaria vector Anopheles atroparvus in southern Europe. Malar. J. 10: 5.
52. Zecca, M., K. Basler, and G. Struhl, 1995 Sequential organizing activities of engrailed, hedgehog, and decapentaplegic in the Drosophila wing. Development 121: 2265-2278.