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Volumn 62, Issue 4, 2013, Pages 779-789

Analysis of DNA polymorphism in ancient barley herbarium material: Validation of the KASP SNP genotyping platform

Author keywords

Europe; Flowering time; Herbarium specimens; Hordeum vulgare subsp. vulgare; Molecular markers; Photoperiod

Indexed keywords

ALLELE; BARLEY; DNA; FLOWERING; GENETIC DIFFERENTIATION; GENOTYPE; HERBARIUM; LOCAL ADAPTATION; MOLECULAR ANALYSIS; POLYMORPHISM; SEED;

EID: 84883239562     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.12705/624.9     Document Type: Article
Times cited : (21)

References (33)
  • 1
    • 38849132739 scopus 로고    scopus 로고
    • DNA from herbarium specimens settles a controversy about origins of the European potato
    • Ames, M. & Spooner, D.M. 2008. DNA from herbarium specimens settles a controversy about origins of the European potato. Amer. J. Bot. 95: 252-257. http://dx.doi.org/10.3732/ajb.95.2.252
    • (2008) Amer. J. Bot , vol.95 , pp. 252-257
    • Ames, M.1    Spooner, D.M.2
  • 2
    • 77954241900 scopus 로고    scopus 로고
    • Re-evaluating the history of the wheat domestication gene NAM-B1 using historical plant material
    • Asplund, L., Hagenblad, J. & Leino, M.W. 2010. Re-evaluating the history of the wheat domestication gene NAM-B1 using historical plant material. J. Archaeol. Sci. 37: 2303-2307. http://dx.doi.org/10.1016/j.jas.2010.04.003
    • (2010) J. Archaeol. Sci , vol.37 , pp. 2303-2307
    • Asplund, L.1    Hagenblad, J.2    Leino, M.W.3
  • 3
    • 84861040342 scopus 로고    scopus 로고
    • Allelic variation at the Rht8 locus in a 19th century wheat collection
    • Asplund, L., Leino, M.W. & Hagenblad, J. 2012. Allelic variation at the Rht8 locus in a 19th century wheat collection. Sci. World J., 2012, http://dx.doi.org/doi:10.1100/2012/385610
    • (2012) Sci. World J , pp. 2012
    • Asplund, L.1    Leino, M.W.2    Hagenblad, J.3
  • 4
    • 84862183836 scopus 로고    scopus 로고
    • Next generation sequencing of DNA in 3300-year-old charred cereal grains
    • Bunning, S.L., Jones, H. & Brown, T.A. 2012. Next generation sequencing of DNA in 3300-year-old charred cereal grains. J. Archaeol. Sci. 39: 2780-2784. http://dx.doi.org/10.1016/j.jas.2012.04.012
    • (2012) J. Archaeol. Sci , vol.39 , pp. 2780-2784
    • Bunning, S.L.1    Jones, H.2    Brown, T.A.3
  • 6
    • 34548154862 scopus 로고    scopus 로고
    • Control of flowering time in temperate cereals: Genes, domestication and sustainable productivity
    • Cockram, J., Jones, H., Leigh, F.J., O'Sullivan, D., Powell, W., Laurie, D.A. & Greenland, A.J. 2007. Control of flowering time in temperate cereals: Genes, domestication and sustainable productivity. J. Exp. Bot. 58: 1231-1244. http://dx.doi.org/10.1093/jxb/erm042
    • (2007) J. Exp. Bot , vol.58 , pp. 1231-1244
    • Cockram, J.1    Jones, H.2    Leigh, F.J.3    O'Sullivan, D.4    Powell, W.5    Laurie, D.A.6    Greenland, A.J.7
  • 8
    • 63149089857 scopus 로고    scopus 로고
    • PCR markers diagnostic for seasonal growth habit in barley
    • Cockram, J., Norris, C. & O'Sullivan, D.M. 2009. PCR markers diagnostic for seasonal growth habit in barley. Crop Sci. (Madison) 49: 403-410. http://dx.doi.org/10.2135/cropsci2008.07.0398
    • (2009) Crop Sci. (Madison) , vol.49 , pp. 403-410
    • Cockram, J.1    Norris, C.2    O'Sullivan, D.M.3
  • 10
    • 79960128114 scopus 로고    scopus 로고
    • Genetic variation at flowering time loci in wild and cultivated barley
    • Cockram, J., Jones, H. & O'Sullivan, D.M. 2011. Genetic variation at flowering time loci in wild and cultivated barley. Pl. Genet. Resources 9: 264-267. http://dx.doi.org/10.1017/S1479262111000505
    • (2011) Pl. Genet. Resources , vol.9 , pp. 264-267
    • Cockram, J.1    Jones, H.2    O'Sullivan, D.M.3
  • 11
    • 84869086304 scopus 로고    scopus 로고
    • Assessment of diagnostic molecular markers for DUS phenotypic assessment in barley (Hordeum vulgare ssp. vulgare L.)
    • Cockram, J., Jones, H., Norris, C. & O'Sullivan, D.M. 2012. Assessment of diagnostic molecular markers for DUS phenotypic assessment in barley (Hordeum vulgare ssp. vulgare L.). Theor. Appl. Genet. 125: 1735-1749. http://dx.doi.org/10.1007/s00122-012-1950-3
    • (2012) Theor. Appl. Genet , vol.125 , pp. 1735-1749
    • Cockram, J.1    Jones, H.2    Norris, C.3    O'Sullivan, D.M.4
  • 12
    • 78650068841 scopus 로고    scopus 로고
    • Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: Implications for association mapping in germplasm arrays varying in size and structure
    • Cuesta-Marcos, A., Szucs, P., Close, T.J., Filichkin, T., Muehlbauer, G.J., Smith, K.P. & Hayes, P.M. 2010. Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: Implications for association mapping in germplasm arrays varying in size and structure. B.M.C.Genomics 11: 707. http://dx.doi.org/10.1186/1471-2164-11-707
    • (2010) B.M.C.Genomics , vol.11 , pp. 707
    • Cuesta-Marcos, A.1    Szucs, P.2    Close, T.J.3    Filichkin, T.4    Muehlbauer, G.J.5    Smith, K.P.6    Hayes, P.M.7
  • 13
    • 47049093139 scopus 로고    scopus 로고
    • Improved methodology for extraction and amplification of DNA from single grains of charred wheat
    • Giles, R.J. & Brown, T.A. 2008. Improved methodology for extraction and amplification of DNA from single grains of charred wheat. J. Archaeol. Sci. 35: 2585-2588. http://dx.doi.org/10.1016/j.jas.2008.04.011
    • (2008) J. Archaeol. Sci , vol.35 , pp. 2585-2588
    • Giles, R.J.1    Brown, T.A.2
  • 14
    • 52449131460 scopus 로고    scopus 로고
    • Population based re-sequencing reveals that flowering time adaptation of cultivated barley originated east of the Fertile Crescent
    • Jones, H., Leigh, F.J., Mackay, I., Bower, M.A., Smith, L.M.J., Charles, M.P., Jones, G., Jones, M.K., Brown, T.A. & Powell, W. 2008a. Population based re-sequencing reveals that flowering time adaptation of cultivated barley originated east of the Fertile Crescent. Molec. Biol. Evol. 25: 2211-2219. http://dx.doi.org/10.1093/molbev/msn167
    • (2008) Molec. Biol. Evol , vol.25 , pp. 2211-2219
    • Jones, H.1    Leigh, F.J.2    Mackay, I.3    Bower, M.A.4    Smith, L.M.J.5    Charles, M.P.6    Jones, G.7    Jones, M.K.8    Brown, T.A.9    Powell, W.10
  • 15
    • 52449106507 scopus 로고    scopus 로고
    • Approaches and constraints of using existing landrace and extant plant material to understand agricultural spread in prehistory
    • Jones, H., Lister, D.L., Bower, M.A., Leigh, F.J., Smith, L.M. & Jones, M.K. 2008b. Approaches and constraints of using existing landrace and extant plant material to understand agricultural spread in prehistory. Pl. Genet. Resources 6: 1-15. http://dx.doi.org/10.1017/S1479262108993138
    • (2008) Pl. Genet. Resources , vol.6 , pp. 1-15
    • Jones, H.1    Lister, D.L.2    Bower, M.A.3    Leigh, F.J.4    Smith, L.M.5    Jones, M.K.6
  • 17
    • 84875465268 scopus 로고    scopus 로고
    • Evaluation of the use of high density SNP genotyping to implement UPOV Model 2 for DUS testing in barley
    • Jones, H., Norris, C., Smith, D., Cockram, J., Lee, D., O'Sullivan, D.M. & Mackay, I. 2013. Evaluation of the use of high density SNP genotyping to implement UPOV Model 2 for DUS testing in barley. Theor. Appl. Genet. 126: 901-911. http://dx.doi.org/10.1007/s00122-012-2024-2
    • (2013) Theor. Appl. Genet , vol.126 , pp. 901-911
    • Jones, H.1    Norris, C.2    Smith, D.3    Cockram, J.4    Lee, D.5    O'Sullivan, D.M.6    Mackay, I.7
  • 19
    • 0028894529 scopus 로고
    • RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter × spring barley (Hordeum vul-gare L.) cross
    • Laurie, D.A., Pratchett, N., Bezant, J.H. & Snape, J.W. 1995. RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter × spring barley (Hordeum vul-gare L.) cross. Genome 38: 575-585. http://dx.doi.org/10.1139/g95-074
    • (1995) Genome , vol.38 , pp. 575-585
    • Laurie, D.A.1    Pratchett, N.2    Bezant, J.H.3    Snape, J.W.4
  • 20
    • 77952298656 scopus 로고    scopus 로고
    • Nineteenth century seeds reveal the population genetics of landrace barley (Hordeum vulgare)
    • Leino, M.W. & Hagenblad, J. 2009. Nineteenth century seeds reveal the population genetics of landrace barley (Hordeum vulgare). Molec. Biol. Evol. 27: 964-973. http://dx.doi.org/10.1093/molbev/msp308
    • (2009) Molec. Biol. Evol , vol.27 , pp. 964-973
    • Leino, M.W.1    Hagenblad, J.2
  • 21
    • 84875728725 scopus 로고    scopus 로고
    • Twentieth-century changes in the genetic composition of Swedish field pea metapopu-lations
    • Leino, M.W., Boström, E. & Hagenblad, J. 2013. Twentieth-century changes in the genetic composition of Swedish field pea metapopu-lations. Heredity 110: 338-346. http://dx.doi.org/10.1038/hdy.2012.93
    • (2013) Heredity , vol.110 , pp. 338-346
    • Leino, M.W.1    Boström, E.2    Hagenblad, J.3
  • 22
    • 78049284331 scopus 로고    scopus 로고
    • Ancient DNA analysis of desiccated wheat grains excavated from a Bronze Age cemetery in Xinjiang
    • Li, C.X., Lister, D.L., Li, H.J., Xu, Y., Cui, Y., Bower, M.A., Jones, M.K. & Zhou, H. 2011. Ancient DNA analysis of desiccated wheat grains excavated from a Bronze Age cemetery in Xinjiang. J. Archaeol. Sci. 38: 115-119. http://dx.doi.org/10.1016/j.jas.2010.08.016
    • (2011) J. Archaeol. Sci , vol.38 , pp. 115-119
    • Li, C.X.1    Lister, D.L.2    Li, H.J.3    Xu, Y.4    Cui, Y.5    Bower, M.A.6    Jones, M.K.7    Zhou, H.8
  • 23
    • 41349094582 scopus 로고    scopus 로고
    • Extraction and amplification of nuclear DNA from herbarium specimens of emmer wheat: A method for assessing DNA preservation by maximum amplicon length recovery
    • Lister, D.L., Bower, M.A., Howe, C.J. & Jones, M.K. 2008. Extraction and amplification of nuclear DNA from herbarium specimens of emmer wheat: A method for assessing DNA preservation by maximum amplicon length recovery. Taxon 57: 254-258.
    • (2008) Taxon , vol.57 , pp. 254-258
    • Lister, D.L.1    Bower, M.A.2    Howe, C.J.3    Jones, M.K.4
  • 24
    • 59349101069 scopus 로고    scopus 로고
    • Latitudinal variation in a photoperiod response gene in European barley: Insight into the dynamics of agricultural spread from 'historic' specimens
    • Lister, D.L., Thaw, S., Bower, M.A., Jones, H., Charles, M.P., Jones, G., Smith, L.M.J., Howe, C.J., Brown, T.A. & Jones, M.K. 2009. Latitudinal variation in a photoperiod response gene in European barley: Insight into the dynamics of agricultural spread from 'historic' specimens. J. Archaeol. Sci. 36: 1092-1098. http://dx.doi.org/10.1016/j.jas.2008.12.012
    • (2009) J. Archaeol. Sci , vol.36 , pp. 1092-1098
    • Lister, D.L.1    Thaw, S.2    Bower, M.A.3    Jones, H.4    Charles, M.P.5    Jones, G.6    Smith, L.M.J.7    Howe, C.J.8    Brown, T.A.9    Jones, M.K.10
  • 25
    • 80055018029 scopus 로고    scopus 로고
    • Whole genome amplification and microsatellite genotyping of herbarium DNA revealed the identity of an ancient grapevine cultivar
    • Malenica, N., Simon, S., Besendorfer, V., Maletic, E., Kontic, J.K. & Pejic, I. 2011. Whole genome amplification and microsatellite genotyping of herbarium DNA revealed the identity of an ancient grapevine cultivar. Naturwissenschaften 98: 763-772. http://dx.doi.org/10.1007/s00114-011-0826-8
    • (2011) Naturwissenschaften , vol.98 , pp. 763-772
    • Malenica, N.1    Simon, S.2    Besendorfer, V.3    Maletic, E.4    Kontic, J.K.5    Pejic, I.6
  • 26
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-the next generation
    • Metzker, M.L. 2010. Sequencing technologies-the next generation. Nat. Rev. Genet. 11: 31-46. http://dx.doi.org/10.1038/nrg2626
    • (2010) Nat. Rev. Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 27
    • 44949188265 scopus 로고    scopus 로고
    • Results of molecular analysis of an archaeological hemp (Cannabis sativa L.) DNA sample from North West China
    • Mukherjee, A., Roy, S.C., De Bera, S., Jiang, H.E., Li, X., Li, C.S. & Bera, S. 2008. Results of molecular analysis of an archaeological hemp (Cannabis sativa L.) DNA sample from North West China. Genet. Resources Crop Evol. 55: 481-485. http://dx.doi.org/10.1007/s10722-008-9343-9
    • (2008) Genet. Resources Crop Evol , vol.55 , pp. 481-485
    • Mukherjee, A.1    Roy, S.C.2    de Bera, S.3    Jiang, H.E.4    Li, X.5    Li, C.S.6    Bera, S.7
  • 30
    • 27744446297 scopus 로고    scopus 로고
    • The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley
    • Turner, A., Beales, J., Faure, S., Dunford, R.P. & Laurie, D.A. 2005. The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310: 1031-1034. http://dx.doi.org/10.1126/science.1117619
    • (2005) Science , vol.310 , pp. 1031-1034
    • Turner, A.1    Beales, J.2    Faure, S.3    Dunford, R.P.4    Laurie, D.A.5
  • 32
    • 36549023365 scopus 로고    scopus 로고
    • Back to the future: Museum specimens in population genetics
    • Wandeler, P., Hoeck, P.E.A. & Keller, L.F. 2007. Back to the future: Museum specimens in population genetics. Trends Ecol. Evol. 22: 634-642. http://dx.doi.org/10.1016/j.tree.2007.08.017
    • (2007) Trends Ecol. Evol , vol.22 , pp. 634-642
    • Wandeler, P.1    Hoeck, P.E.A.2    Keller, L.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.