Twentieth-century changes in the genetic composition of Swedish field pea metapopulations

Heredity

Volumn 110, Issue 4, 2013, Pages 338-346

  Leino, M W ^a,b   Bostrom E ^c   Hagenblad, J ^b,c  

^a Swedish Museum of Cultural History   (Sweden)

^b LINKÖPING UNIVERSITY   (Sweden)

^c NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

Author keywords

aged DNA; landraces; Pisum sativum; population structure; seed exchange; simple sequence repeats

Indexed keywords

CULTIVAR; GENE FLOW; GENETIC DRIFT; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; INTRAPOPULATION VARIATION; ISOLATED POPULATION; LEGUME; METAPOPULATION; NINETEENTH CENTURY; TWENTIETH CENTURY;

ALLELE; ARTICLE; BREEDING; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; PEA; PLANT SEED; POPULATION GENETICS; SWEDEN;

ALLELES; BREEDING; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; PEAS; SEEDS; SELECTION, GENETIC; SWEDEN;

SWEDEN;

PISUM SATIVUM;

EID: 84875728725     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2012.93     Document Type: Article

References (41)

1. Åkerberg E (1951). Trindsad. In: Å kerman Å, Nilsson F, Sylvén N, Fröier K (eds). Svensk va?xtföra?dling I: Stockholm 233-274.
2. Alvarez N, Garine E, Khasah C, Dounias E, Hossaert-McKey M, McKey D (2005). Farmers' practices, metapopulation dynamics, and conservation of agricultural biodiversity onfarm: A case study of sorghum among the Duupa in sub-sahelian Cameroon. Biol Conserv 121: 533-543.
3. Baranger A, Aubert G, Arnau G, Lainé AL, Deniot G, Potier J et al. (2004). Genetic diversity within Pisum sativum using protein and PCR-based markers. Theor Appl Genet 108: 1309-1321.
4. Bingefors S, Johansson N, Rydberg I (1986). Improved field pea cultivars for modern farming. In: Olsson G (ed) Svalö f 1886-1986. Research and Results in Plant Breeding. LT: Stockholm, pp 185-195.
5. Camacho-Villa TC, Maxted N, Scholten M, Ford-Lloyd B (2005). Defining and identifying crop landraces. Plant Gen Res 3: 373-384.
6. Cieslarová J, Smy'kal P, Doc?kalová Z, Hana'c?ek P, Procha'zka S, Hy'bl M et al. (2010). Molecular evidence of genetic diversity changes in pea (Pisum sativum L.) germplasm after long-term maintenance. Genet Res Crop Evol 58: 439-451.
7. Demissie A, Bjørnstad Å, Kleinhofs A (1998). Restriction fragment length polymorphism in landrace barleys from Ethiopia in relation to geographic, altitude, and agro-ecological factors. Crop Sci 38: 237-243.
8. Evanno G, Regnaut S, Goudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol Ecol 14: 2611-2620.
9. Falush D, Stephens M, Pritchard JK (2003). Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
10. Hagenblad J, Zie J, Leino MW (2012). Exploring the population genetics of genebank and historical landrace varieties. Genet Res Crop Evol 59: 1185-1199.
11. Hellens RP, Moreau C, Lin-Wang K, Schwinn KE, Thomson SJ, Fiers MWEJ et al. (2010). Identification of Mendel's white flower character. PLOS One 5: E13230.
12. Hjelmqvist H (1979). Beitra?ge zur Kenntnis der pra?historischen Nutzpflantzen in Schweden. Opera Bot 47: 1-58.
13. Jakobsson M, Rosenberg NA (2007). CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
14. Jing R, Vershinin A, Grzebyta J, Shaw P, Smy'kal P, Marshall D et al. (2010). The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis. BMC Evol Biol 10: 44.
15. Jing R, Ambrose MA, Knox MR, Smykal P, Hybl M, Ramos Á et al. (2012). Genetic diversity in European Pisum germplasm collections. Theor Appl Genet 125: 367-380.
16. Jones H, Civa'n? P, Cockram J, Leigh FJ, Smith LMJ, Jones MK et al. (2011). Evolutionary history of barley cultivation in Europe revealed by genetic analysis of modern landraces. BMC Evol Biol 11: 320.
17. Lawson Handley LJ, Manica A, Goudet J, Balloux F (2007). Going the distance: Human population genetics in a clinal world. Trends Genet 23: 432-439.
18. Leino M, Nyga°rds L (2008). Puggor och pelusker - svenska lokalsorter av a? rt. Svensk Botanisk Tidskrift 102: 153-162.
19. Leino MW, Hagenblad J, Edqvist J, Karlsson Strese E-M (2009). DNA preservation and utility of a historic seed collection. Seed Sci Res 19: 125-135.
20. Leino MW, Hagenblad J (2010). 19th century seeds reveal the population genetics of landrace barley (Hordeum vulgare). Mol Biol Evol 27: 964-973.
21. Lister DL, Thaw S, Bower MA, Jones H, Charles MP, Jones G et al. (2009). Latitudinal variation in a photoperiod response gene in European barley: Insight into the dynamics of agricultural spread from 'historic' specimens. J Arch Sci 36: 1092-1098.
22. Loridon K, McPhee K, Morin J, Dubreuil P, Pilet-Nayel ML, Aubert G et al. (2005). Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.). Theor Appl Genet 111: 1022-1031.
23. Malysheva-Otto LV, Ganal MW, Röder MS (2006). Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.). BMC Genet 7: 6.
24. Mendel G (1866). Versuche über Pflanzen-Hybriden. Verh. Naturforsch. Ver. Brünn 4: 3-47.
25. Nei M (1973). Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
26. Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H et al. (2005). The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol 3: E196.
27. Oliveira HR, Jones H, Leigh F, Lister DL, Jones MK, Pen? a-Chocarro L (2011). Phylogeography of einkorn landraces in the Mediterranean basin and Central Europe: Population structure and cultivation history. Archaeol Anthropol Sci 3: 327-341.
28. Osvald H (1959). Åkerns nyttova?xter. Sv litteratur: Stockholm.
29. Papa R, Attene G, Barcaccia G, Ohgata A, Konishi T (1998). Genetic diversity in landrace populations of Hordeum vulgare L. from Sardinia, Italy, as revealed by RAPDs, isozymes and morphophenological traits. Plant Breed 117: 523-530.
30. Pautasso M, Aistara G, Barnaud A, Caillon S, Clouvel P, Coomes OT et al. (2012). Seed exchange networks for agrobiodiversity conservation. A review. Agron Sustain Dev; doi:10.1007/s13593-012-0089-6 .
31. Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
32. Pritchard JK, Wen X, Falush D (2010). Documentation for structure software: Version 2.3. Available from. http://pritch.bsd.uchicago.edu/software. html.
33. R Development Core Team (2007). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL. http://www.R-project.org.
34. Rodriguez M, Rau D, O'Sullivan D, Brown AH, Papa R, Attene G (2012). Genetic structure and linkage disequilibrium in landrace populations of barley in Sardinia. Theor Appl Genet 125: 171-184.
35. Rosenberg NA (2004). Distruct: A program for the graphical display of population structure. Mol Ecol Notes 4: 137-138.
36. Swedish Board of Agriculture (2011). Agriculture in Figures - Years 1866-2007.
37. Jönköping, Sweden. Thomas M, Dawson JC, Goldringer I, Bonneuil C (2011). Seed exchanges, a key to analyze crop diversity dynamics in farmer-led on-farm conservation. Genet Res Crop Evol 58: 321-338.
38. van Heerwaarden J, Doebley J, Briggs WH, Glaubitz JC, Goodman MM, Gonzalez JJS et al. (2011). Genetic signals of origin, spread and introgression in a large sample of maize landraces. Proc Natl Acad Sci USA 108: 1088-1092.
39. Wright S (1951). The genetical structure of populations. Ann Eugen 15: 323-354.
40. Zong X, Redden RJ, Liu Q, Wang S, Guan J, Liu J et al. (2009). Analysis of a diverse global Pisum sp. collection and comparison to a Chinese local P. sativum collection with microsatellite markers. Theor Appl Genet 118: 193-204.
41. Zong X-X, Guan J-P, Wang S-M, Liu Q-C (2008). Genetic diversity among Chinese pea (Pisum sativum L.) landraces as revealed by SSR markers. Acta Agron Sin 34: 1330-1338.