Whole genome amplification and microsatellite genotyping of herbarium DNA revealed the identity of an ancient grapevine cultivar

Naturwissenschaften

Volumn 98, Issue 9, 2011, Pages 763-772

  Malenica, Nenad ^a   Šimon, Silvio ^b   Besendorfer, Višnja ^a   Maletic, Edi ^b   Kontić, Jasminka Karoglan ^b   Pejić, Ivan ^b  

^a UNIVERSITY OF ZAGREB   (Croatia)

^b UNIVERSITY OF ZAGREB   (Croatia)

Author keywords

ADNA; Herbarium; SSR; Tribidrag; Vitis vinifera; Zinfandel

Indexed keywords

MICROSATELLITE DNA;

CULTIVAR; DECADAL VARIATION; GENEALOGY; GENETIC MARKER; GENOME; GENOTYPE; HERBARIUM; VINE;

ARTICLE; CLASSIFICATION; GENETICS; GENOTYPING TECHNIQUE; PLANT GENOME; SPECIES DIFFERENCE; VITIS;

GENOME, PLANT; GENOTYPING TECHNIQUES; MICROSATELLITE REPEATS; SPECIES SPECIFICITY; VITIS;

VITACEAE; VITIS; VITIS VINIFERA;

EID: 80055018029     PISSN: 00281042     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00114-011-0826-8     Document Type: Article

References (35)

1. Bowers JE, Meredith CP (1997) The parentage of a classic wine grape, Cabernet Sauvignon. Nat Genet 16(1):84-87 (Pubitemid 27198161)
2. Bowers JE, Bandman EB, Meredith CP (1993) DNA fingerprint characterization of some wine grape cultivars. Am J Enol Vitic 44 (3):266-274 (Pubitemid 2004859)
3. Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39:628-633 (Pubitemid 26369456)
4. Bowers J, Boursiquot J-M, This P, Chu K, Johansson H, Meredith C (1999a) Historical genetics: The parentage of Chardonnay, Gamay, and other wine grapes of Northeastern France. Science 285 (5433):1562-1565. doi:10.1126/science.285. 5433.1562 (Pubitemid 29420579)
5. Bowers JE, Dangl GS, Meredith CP (1999b) Development and characterization of additional microsatellite DNA markers for grape. Am J Enol Vitic 50(3):243-246 (Pubitemid 29506808)
6. Bulic S (1949) Dalmatinska ampelografija/Dalmatian Ampelography. Poljoprivredni nakladni zavod, Zagreb, Croatia
7. Cappellini E, Gilbert MT, Geuna F, Fiorentino G, Hall A, Thomas-Oates J, Ashton PD, Ashford DA, Arthur P et al (2010) A multidisciplinary study of archaeological grape seeds. Naturwissenschaften 97 (2):205-217. doi:10.1007/s00114-009-0629-3
8. Cooper A, Poinar HN (2000) Ancient DNA: Do it right or not at all. Science 289(5482):1139 (Pubitemid 30650710)
9. Drabkova L, Kirschner J, Vlcek C (2002) Comparison of seven DNA extraction and amplification protocols in histroical herbarium speciment of Juncaceae. Plant Mol Biol Rep 20:161-175 (Pubitemid 39239043)
10. Gilbert MT, Bandelt HJ, Hofreiter M, Barnes I (2005) Assessing ancient DNA studies. Trends Ecol Evol 20(10):541-544 (Pubitemid 41323710)
11. Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai Wet al (2010) A draft sequence of the Neandertal genome. Science 328(5979):710-722. doi:10.1126/ science.1188021
12. Heintl FR (1821) Weinbau des österreichischen Kaisertums. Wien/ Winegrowing in the Austrian empire. Vienna
13. Hummel S (2003) DNA markers. Ancient DNA typing. Springer, Berlin.
14. Jankowiak K, Buczkowska K, Szweykowska-Kulinska Z (2005) Successful extraction of DNA from 100-year-old herbarium specimens of the liverwort Bazzania trilobata. Taxon 54(2):335-336 (Pubitemid 40886121)
15. Maletic E, Pejic I, Karlogan Kontic J, Piljac J, Dangl GS, Vokurka A, Lacombe T, Mirosevic N, Meredith CP (2004) Zinfandel, Dobricic and Plavac mali: The genetic relationship among three cultivars of the Dalmatian coast of Croatia. Am J Enol Vitic 55(2):174-180 (Pubitemid 38927730)
16. Manen J-F, Bouby L, Dalnoki O, Marinval P, Turgay M, Schlumbaum A (2003) Microsatellites from archeological Vitis vinifera seeds allow a tentative assignment of the geographical origin of ancient cultivars. J Archaeol Sci 00:1-9
17. Pelsy F (2010) Molecular and cellular mechanisms of diversity within grapevine varieties. Heredity 104(4):331-340. doi:10.1038/ hdy.2009.161
18. Pratelli R, Lacombe B, Torregrosa L, Gaymard F, Romieu C, Thibaud J-B, Sentenac H (2002) A grapevine gene encoding a guard cell K(+) channel displays developmental regulation in the grapevine berry. Plant Physiol 128(2):564-577 (Pubitemid 34190871)
19. Rogers SO, Bendich AJ (1985) Extraction of DNA from miligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol Biol 5:69-76
20. Savolainen V, Cuénoud P, Spichiger R, Martinez MDP, Crèvecoeur M, Manen J-F (1995) The use of herbarium specimens in DNA phylogenetics: Evaluation and improvement. Plant Syst Evol 197 (1):87-98. doi:10.1007/bf00984634 (Pubitemid 3000438)
21. Schlumbaum A, Tensen M, Jaenicke-Després V (2008) Ancient plant DNA in archaeobotany. Veg Hist Archaeobot 17(2):233-244. doi:10.1007/s00334-007- 0125-7 (Pubitemid 351190242)
22. Sefc KM, Regner F, Turetschek E, Glössl J, Steinkellner H (1999) Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42 (3):367-373 (Pubitemid 29373094)
23. Sefc KM, Pejic I, Maletic E, Thomas MR, Lefort F (2009) Microsatellite markers for grapevine: Tools for cultivar identification and pedigree reconstruction. In: Roubelakis-Angelakis KA (ed) Grapevine molecular physiology and biotechnology. Springer Dordrecht Heidelberg London New York, pp 565-596
24. Sullivan CL (2003) Zinfandel: A history of a grape and its wine. University of California Press, Berkeley
25. Taylor JW, Swann EC (1994) DNA from herbarium specimens. In: Herrmann B, Hummel S (eds) Ancient DNA. Springer, Berlin, pp 167-181
26. Telle S, Thines M (2008) Amplification of cox2 (approximately 620 bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases. PLoS One 3(10):e3584. doi:10.1371/journal.pone. 0003584
27. This P, Jung A, Boccacci P, Borrego J, Botta J, Costantini L (2004) Developmet of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor Appl Genet 109:1448-1458 (Pubitemid 40059267)
28. This P, Lacombe T, Thomas MR (2006) Historical origins and genetic diversity of wine grapes. Trends Genet 22(9):511-519. doi:10.1016/j.tig.2006.07. 008
29. Thomas MR, Scott NS (1993) Microsatellite repeats in the grapevine reveal DNA polymorphism when analyzed as sequence-tagged sites (STS). Theor Appl Genet 86:985-990
30. Tudor A (2002) Plemic, pjesnik, težak. Zarez 4:85-86
31. Tudor A (2010) Nekoliko povijesnih podataka o Tribidragu (Zinfandel, Crljenak kaštelanski, Tribidrag) Mogucnosti: Književnost, umjetnost, kulturni problemi 1 (7-9):103-109
32. Vouillamoz JF, Grando MS (2006) Genealogy of wine grape cultivars: "Pinot" is related to "Syrah". Heredity 97(2):102-110. doi:10.1038/sj.hdy.6800842 (Pubitemid 44341510)
33. Vouillamoz J, Schneider A, Grando M (2007) Microsatellite analysis of alpine grape cultivars (Vitis vinifera): Alleged descendants of Pliny the Elder's Raetica are genetically related. Genet Resour Crop Evol 54(5):1095-1104. doi:10.1007/s10722-006-9001-z (Pubitemid 47030028)
34. Willerslev E, Cooper A (2005) Ancient DNA. Proc Biol Sci 272 (1558):3-16. doi:10.1098/rspb.2004.2813
35. Willerslev E, Hansen AJ, Binladen J, Brand TB, Gilbert MT, Shapiro B, Bunce M, Wiuf C, Gilichinsky DA et al (2003) Diverse plant and animal genetic records from holocene and pleistocene sediments. Science 300(5620):791-795. doi:10.1126/science.10841141084114 (Pubitemid 36532113)