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Volumn 3, Issue 5, 2013, Pages 909-916

Genomic estimated breeding values using genomic relationship matrices in a cloned population of loblolly pine

Author keywords

Best linear unbiased prediction; GenPred; Pinus taeda; Quantitative genetics; Shared data resource

Indexed keywords

ACCURACY; ARTICLE; BEST LINEAR UNBIASED PREDICTION; BREEDING; FOREST; GENE FREQUENCY; GENE LOCUS; GENE REPLICATION; GENETICS; GENOMICS; GENOTYPE; GENPRED; LOBLOLLY PINE; METHODOLOGY; MOLECULAR CLONING; MOLECULAR PHYLOGENY; NONHUMAN; PHENOTYPE; PLANT GENOME; POPULATION GENETICS; PREDICTION; QUANTITATIVE GENETICS; REGRESSION ANALYSIS; REPRODUCIBILITY; SHARED DATA RESOURCE; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL; TREE;

EID: 84883237547     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.113.005975     Document Type: Article
Times cited : (72)

References (35)
  • 1
    • 25444515146 scopus 로고    scopus 로고
    • Prediction of accuracy of estimated Mendelian sampling terms
    • Avendano, S., J. A. Woolliams, and B. Villanueva, 2005 Prediction of accuracy of estimated Mendelian sampling terms. J. Anim. Breed. Genet. 122: 302-308.
    • (2005) J. Anim. Breed. Genet. , vol.122 , pp. 302-308
    • Avendano, S.1    Woolliams, J.A.2    Villanueva, B.3
  • 2
    • 77954740889 scopus 로고    scopus 로고
    • Broad implications of southern United States pine clonal forestry on planning and management of forests
    • Bettinger, P., M. Clutter, J. Siry, M. Kane, and J. Pait, 2009 Broad implications of southern United States pine clonal forestry on planning and management of forests. Int. Rev. 11(3): 331-345.
    • (2009) Int. Rev. , vol.11 , Issue.3 , pp. 331-345
    • Bettinger, P.1    Clutter, M.2    Siry, J.3    Kane, M.4    Pait, J.5
  • 4
    • 80052679688 scopus 로고    scopus 로고
    • Imputation of missing genotypes from sparse to high density using long-range phasing
    • Daetwyler, H. D., G. R. Wiggans, B. J. Hayes, J. A. Woolliams, and M. E. Goddard, 2011 Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics 189: 317-327.
    • (2011) Genetics , vol.189 , pp. 317-327
    • Daetwyler, H.D.1    Wiggans, G.R.2    Hayes, B.J.3    Woolliams, J.A.4    Goddard, M.E.5
  • 5
    • 77956090475 scopus 로고    scopus 로고
    • Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L
    • Eckert, A. J., J. van Heerwaarden, J. L. Wegrzyn, C. D. Nelson, J. Ross-Ibarra et al., 2010 Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae). Genetics 185(3): 969-982.
    • (2010) , Pinaceae). Genetics , vol.185 , Issue.3 , pp. 969-982
    • Eckert, A.J.1    van Heerwaarden, J.2    Wegrzyn, J.L.3    Nelson, C.D.4    Ross-Ibarra, J.5
  • 6
  • 8
    • 0003995062 scopus 로고    scopus 로고
    • Introduction to Quantitative Genetics
    • Ed. 4., Longman Group, Ltd., Essex, England
    • Falconer, D. S., and T. F. C. Mackay, 1996 Introduction to Quantitative Genetics, Ed. 4., Longman Group, Ltd., Essex, England.
    • (1996)
    • Falconer, D.S.1    Mackay, T.F.C.2
  • 9
    • 79952674362 scopus 로고    scopus 로고
    • Different genomic relationship matrices for single-step analysis using phenotypic, pedigree and genomic information
    • Forni, S., I. Aguilar, and I. Misztal, 2011 Different genomic relationship matrices for single-step analysis using phenotypic, pedigree and genomic information. Genet. Sel. Evol. 43:1.
    • (2011) Genet. Sel. Evol. , vol.43 , pp. 1
    • Forni, S.1    Aguilar, I.2    Misztal, I.3
  • 10
    • 77949854404 scopus 로고    scopus 로고
    • Deregressing estimated breeding values and weighting information for genomic regression analyses
    • Garrick, D. J., J. F. Taylor, and R. L. Fernando, 2009 Deregressing estimated breeding values and weighting information for genomic regression analyses. Genet. Sel. Evol. 41: 55.
    • (2009) Genet. Sel. Evol. , vol.41 , pp. 55
    • Garrick, D.J.1    Taylor, J.F.2    Fernando, R.L.3
  • 11
    • 33947400230 scopus 로고    scopus 로고
    • A simple method to approximate gene content in large pedigree populations: application to the myostatin gene in dual-purpose Belgian Blue cattle
    • Gengler, N., P. Mayeres, and M. Szydlowski, 2007 A simple method to approximate gene content in large pedigree populations: application to the myostatin gene in dual-purpose Belgian Blue cattle. Animal 1: 21-28.
    • (2007) Animal , vol.1 , pp. 21-28
    • Gengler, N.1    Mayeres, P.2    Szydlowski, M.3
  • 12
    • 84857654213 scopus 로고    scopus 로고
    • ASReml User Guide Release 3.0. VSN International Ltd.
    • Hemel Hempstead, United Kingdom
    • Gilmour, A. R., B. J. Gogel, B. R. Cullis, and R. Thompson, 2009 ASReml User Guide Release 3.0. VSN International Ltd., Hemel Hempstead, United Kingdom.
    • (2009)
    • Gilmour, A.R.1    Gogel, B.J.2    Cullis, B.R.3    Thompson, R.4
  • 14
    • 0346728950 scopus 로고
    • Total and Bark Volume Tables for Small Diameter Loblolly, Shortleaf, and Virginia Pine in the Upper South Carolina Piedmont
    • Forest Research Series No. 9. Clemson University, Clemson, SC
    • Goebel, N. B., and J. R. Warner, 1966 Total and Bark Volume Tables for Small Diameter Loblolly, Shortleaf, and Virginia Pine in the Upper South Carolina Piedmont. Forest Research Series No. 9. Clemson University, Clemson, SC.
    • (1966)
    • Goebel, N.B.1    Warner, J.R.2
  • 15
    • 79953028464 scopus 로고    scopus 로고
    • Genomic selection in forest tree breeding
    • Grattapaglia, D., and M. D. V. Resende, 2011 Genomic selection in forest tree breeding. Tree Genet. Genomes 7: 241-255.
    • (2011) Tree Genet. Genomes , vol.7 , pp. 241-255
    • Grattapaglia, D.1    Resende, M.D.V.2
  • 16
    • 37249083895 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genome-assisted breeding values
    • Habier, D., R. L. Fernando, and J. C. M. Dekkers, 2007 The impact of genetic relationship information on genome-assisted breeding values. Genetics 177: 2389-2397.
    • (2007) Genetics , vol.177 , pp. 2389-2397
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 17
    • 85025374820 scopus 로고
    • Use of relationships among sires to increase accuracy of sire evaluation
    • Henderson, C. R., 1975 Use of relationships among sires to increase accuracy of sire evaluation. J. Dairy Sci. 58: 1731-1738.
    • (1975) J. Dairy Sci. , vol.58 , pp. 1731-1738
    • Henderson, C.R.1
  • 18
    • 0035210897 scopus 로고    scopus 로고
    • Polymix breeding with parental analysis of progeny: an alternative to full-sib breeding and testing
    • Lambeth, C., B. C. Lee, D. O'Malley, and N. Wheeler, 2001 Polymix breeding with parental analysis of progeny: an alternative to full-sib breeding and testing. Theor. Appl. Genet. 103: 930-943.
    • (2001) Theor. Appl. Genet. , vol.103 , pp. 930-943
    • Lambeth, C.1    Lee, B.C.2    O'Malley, D.3    Wheeler, N.4
  • 19
    • 38949168198 scopus 로고    scopus 로고
    • Technical note: computing strategies in genome-wide selection
    • Legarra, A., and I. Misztal, 2008 Technical note: computing strategies in genome-wide selection. J. Dairy Sci. 91: 360-366.
    • (2008) J. Dairy Sci. , vol.91 , pp. 360-366
    • Legarra, A.1    Misztal, I.2
  • 20
    • 70349300420 scopus 로고    scopus 로고
    • A relationship matrix including full pedigree and genomic information
    • Legarra, A., I. Aguilar, and I. Misztal, 2009 A relationship matrix including full pedigree and genomic information. J. Dairy Sci. 92: 4656-4663.
    • (2009) J. Dairy Sci. , vol.92 , pp. 4656-4663
    • Legarra, A.1    Aguilar, I.2    Misztal, I.3
  • 22
    • 0003873122 scopus 로고    scopus 로고
    • Genetics and Analysis of Quantitative Traits
    • Simauer Associates, Sunderland, MA
    • Lynch, M., and B. Walsh, 1998 Genetics and Analysis of Quantitative Traits. Simauer Associates, Sunderland, MA.
    • (1998)
    • Lynch, M.1    Walsh, B.2
  • 23
    • 0032439967 scopus 로고    scopus 로고
    • A strategy for the third breeding cycle of loblolly pine in the Southeastern U
    • McKeand, S. E., and F. E. Bridgwater, 1998 A strategy for the third breeding cycle of loblolly pine in the Southeastern U.S. Silvae Genet. 47: 223-234.
    • (1998) S. Silvae Genet. , vol.47 , pp. 223-234
    • McKeand, S.E.1    Bridgwater, F.E.2
  • 24
    • 77955482663 scopus 로고    scopus 로고
    • Accurate prediction of genetic values for complex traits by whole-genome resequencing
    • Meuwissen, T. H. E., and M. E. Goddard, 2010 Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 185: 623-631.
    • (2010) Genetics , vol.185 , pp. 623-631
    • Meuwissen, T.H.E.1    Goddard, M.E.2
  • 25
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome wide dense marker maps
    • Meuwissen, T. H. E., B. J. Hayes, and M. E. Goddard, 2001 Prediction of total genetic value using genome wide dense marker maps. Genetics 157: 1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 26
    • 84890201244 scopus 로고    scopus 로고
    • Linear Models for the Prediction of Animal Breeding Values
    • Ed 2. CAB International, Wallingford, United Kingdom
    • Mrode, R. A., 2005 Linear Models for the Prediction of Animal Breeding Values, Ed 2. CAB International, Wallingford, United Kingdom.
    • (2005)
    • Mrode, R.A.1
  • 27
    • 36849052938 scopus 로고    scopus 로고
    • Comparison of genomic and traditional BLUP-estimated breeding value accuracy and selection response under alternative trait and genomic parameters
    • Muir, W. M., 2007 Comparison of genomic and traditional BLUP-estimated breeding value accuracy and selection response under alternative trait and genomic parameters. J. Anim. Breed. Genet. 124: 342-355.
    • (2007) J. Anim. Breed. Genet. , vol.124 , pp. 342-355
    • Muir, W.M.1
  • 28
    • 84855802587 scopus 로고    scopus 로고
    • Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments
    • New Phytologist. Available at
    • Resende, Jr., M. F. R., P. Munoz, J. J. Acosta, G. F. Peter, J. M. Davis et al., 2012 Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments. New Phytologist. Available at: http://onlinelibrary.wiley.com/doi/10.1111/j.1469- 8137.2011.03895.x/full.
    • (2012)
    • Resende, M.F.R.1    Munoz, P.2    Acosta, J.J.3    Peter, G.F.4    Davis, J.M.5
  • 29
    • 84883208664 scopus 로고    scopus 로고
    • SAS Institute Inc, SAS 9.2 User's Guide Statistics. SAS Institute Inc., Cary, NC.
    • SAS Institute Inc, 2010 SAS 9.2 User's Guide Statistics. SAS Institute Inc., Cary, NC.
    • (2010)
  • 30
    • 67649227451 scopus 로고    scopus 로고
    • Technical note: derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit
    • Stranden, I., and D. J. Garrick, 2009 Technical note: derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit. J. Dairy Sci. 92: 2971-2975.
    • (2009) J. Dairy Sci. , vol.92 , pp. 2971-2975
    • Stranden, I.1    Garrick, D.J.2
  • 31
    • 0028316867 scopus 로고
    • Use of multiple genetic markers in prediction of breeding values
    • van Arendonk, J. A. M., B. Tier, and B. P. Kinghorn, 1994 Use of multiple genetic markers in prediction of breeding values. Genetics 137: 319-329.
    • (1994) Genetics , vol.137 , pp. 319-329
    • van Arendonk, J.A.M.1    Tier, B.2    Kinghorn, B.P.3
  • 32
    • 55849129528 scopus 로고    scopus 로고
    • Genomic measures of relationship and inbreeding
    • VanRaden, P. M., 2007 Genomic measures of relationship and inbreeding. Interbull. Bull. 37: 33-36.
    • (2007) Interbull. Bull. , vol.37 , pp. 33-36
    • VanRaden, P.M.1
  • 33
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • VanRaden, P. M., 2008 Efficient methods to compute genomic predictions. J. Dairy Sci. 91: 4414-4423.
    • (2008) J. Dairy Sci. , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 34
    • 33645991808 scopus 로고    scopus 로고
    • Benefits from marker-assisted selection under an additive polygenic genetic model
    • Villanueva, B., R. Pong-Wong, J. Fernandez, and M. A. Toro, 2005 Benefits from marker-assisted selection under an additive polygenic genetic model. J. Anim. Sci. 83: 1747-1752.
    • (2005) J. Anim. Sci. , vol.83 , pp. 1747-1752
    • Villanueva, B.1    Pong-Wong, R.2    Fernandez, J.3    Toro, M.A.4
  • 35
    • 84869878413 scopus 로고    scopus 로고
    • SNP markers trace familial linkages in a cloned population of Pinus taeda-prospects for genomic selection
    • Zapata-Valenzuela, J., F. Isik, C. Maltecca, J. Wegrzyn, D. Neale et al., 2012 SNP markers trace familial linkages in a cloned population of Pinus taeda-prospects for genomic selection. Tree Genet. Genomes 8: 1307-1318.
    • (2012) Tree Genet. Genomes , vol.8 , pp. 1307-1318
    • Zapata-Valenzuela, J.1    Isik, F.2    Maltecca, C.3    Wegrzyn, J.4    Neale, D.5


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