Fabrication of DNA microarrays on polydopamine-modified gold thin films for SPR imaging measurements

Langmuir

Volumn 29, Issue 34, 2013, Pages 10868-10873

  Wood, Jennifer B ^a   Szyndler, Megan W ^a   Halpern, Aaron R ^a   Cho, Kyunghee ^a   Corn, Robert M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONCURRENT CONTROL; GOLD NANOPARTICLES; MICROARRAY ELEMENT; NON-SPECIFIC BINDING; PROTEIN-DNA BINDING; SINGLE-STRANDED DNA; SURFACE PLASMON RESONANCE IMAGING; ULTRASENSITIVE DETECTION;

ADSORPTION; BIOASSAY; BIOCHIPS; CONCURRENCY CONTROL; DEPOSITION; DNA; EXPERIMENTS; FABRICATION; FILM PREPARATION; GOLD; MULTILAYER FILMS; MULTILAYERS; NANOPARTICLES; OLIGONUCLEOTIDES; SURFACE PLASMON RESONANCE;

BIOMOLECULES;

GOLD; INDOLE DERIVATIVE; POLYDOPAMINE; POLYMER;

ARTICLE; ARTIFICIAL MEMBRANE; CHEMISTRY; DNA MICROARRAY; METHODOLOGY; SURFACE PLASMON RESONANCE;

GOLD; INDOLES; MEMBRANES, ARTIFICIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERS; SURFACE PLASMON RESONANCE;

EID: 84883213661     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la402425n     Document Type: Article

References (33)

1. Lynge, M. E.; van der Westen, R.; Postma, A.; Stadler, B. Polydopamine-a Nature-Inspired Polymer Coating for Biomedical Science Nanoscale 2011, 3, 4916
2. Lee, H.; Dellatore, S. M.; Miller, W. M.; Messersmith, P. B. Mussel-Inspired Surface Chemistry for Multifunctional Coatings Science 2007, 318, 426
3. Waite, J. H.; Qin, X. Polyphosphoprotein from the Adhesive Pads of Mytilus Edulis Biochemistry 2001, 40, 2887
4. d'Ischia, M.; Napolitano, A.; Pezzella, A.; Meredith, P.; Sarna, T. Chemical and Structural Diversity in Eumelanins: Unexplored Bio-Optoelectronic Materials Angew. Chem., Int. Ed. 2009, 48, 3914
5. Dreyer, D. R.; Miller, D. J.; Freeman, B. D.; Paul, D. R.; Bielawski, C. W. Elucidating the Structure of Poly(dopamine) Langmuir 2012, 28, 6428
6. Zhou, W.; Lu, C.; Guo, X.; Chen, F.; Yang, H.; Wang, X. Mussel-Inspired Molecularly Imprinted Polymer Coating Superparamagnetic Nanoparticles for Protein Recognition J. Mater. Chem. 2010, 20, 880
7. Fu, Y.; Li, P.; Wang, T.; Bu, L.; Xie, Q.; Xu, X.; Lei, L.; Zou, C.; Chen, J.; Yao, S. Novel Polymeric Bionanocomposites with Catalytic Pt Nanoparticles Label Immobilized for High Performance Amperometric Immunoassay Biosens. Bioelectron. 2010, 25, 1699
8. Yang, S. H.; Kang, S. M.; Lee, K.; Chung, T. D.; Lee, H.; Choi, I. S. Mussel-Inspired Encapsulation and Functionalization of Individual Yeast Cells J. Am. Chem. Soc. 2011, 133, 2795
9. Ouyang, R.; Lei, J.; Ju, H. Surface Molecularly Imprinted Nanowire for Protein Specific Recognition Chem. Commun. 2008, 0, 5761
10. Burzio, L. A.; Waite, J. H. Cross-Linking in Adhesive Quinoproteins: Studies with Model Decapeptides Biochemistry 2000, 39, 11147
11. LaVoie, M. J.; Ostaszewski, B. L.; Weihofen, A.; Schlossmacher, M. G.; Selkoe, D. J. Dopamine Covalently Modifies and Functionally Inactivates Parkin Nat. Med. 2005, 11, 1214
12. Sehgal, D.; Vijay, I. K. A Method for the High Efficiency of Water-Soluble Carbodiimide-Mediated Amidation Anal. Biochem. 1994, 218, 87
13. Lee, H.; Rho, J.; Messersmith, P. B. Facile Conjugation of Biomolecules onto Surfaces via Mussel Adhesive Protein Inspired Coatings Adv. Mater. 2009, 21, 431
14. Sassolas, A.; Leca-Bouvier, B. D.; Blum, L. J. DNA Biosensors and Microarrays Chem. Rev. 2008, 108, 109
15. Stoughton, R. B. Applications of DNA Microarrays in Biology Annu. Rev. Biochem. 2005, 74, 53
16. Duggan, D. J.; Bittner, M.; Chen, Y. D.; Meltzer, P.; Trent, J. M. Expression Profiling Using Cdna Microarrays Nat. Genet. 1999, 21, 10
17. Debouck, C.; Goodfellow, P. N. DNA Microarrays in Drug Discovery and Development Nat. Genet. 1999, 21, 48
18. Brown, P. O.; Botstein, D. Exploring the New World of the Genome with DNA Microarrays Nat. Genet. 1999, 21, 33
19. Thiel, A. J.; Frutos, A. G.; Jordan, C. E.; Corn, R. M.; Smith, L. M. In Situ Surface Plasmon Resonance Imaging Detection of DNA Hybridization to Oligonucleotide Arrays on Gold Surfaces Anal. Chem. 1997, 69, 4948
20. Jordan, C. E.; Frutos, A. G.; Thiel, A. J.; Corn, R. M. Surface Plasmon Resonance Imaging Measurements of DNA Hybridization Adsorption and Streptavidin/DNA Multilayer Formation at Chemically Modified Gold Surfaces Anal. Chem. 1997, 69, 4939
21. Brockman, J. M.; Frutos, A. G.; Corn, R. M. A Multistep Chemical Modification Procedure to Create DNA Arrays on Gold Surfaces for the Study of Protein-DNA Interactions with Surface Plasmon Resonance Imaging J. Am. Chem. Soc. 1999, 121, 8044
22. He, L.; Musick, M. D.; Nicewarner, S. R.; Salinas, F. G.; Benkovic, S. J.; Natan, M. J.; Keating, C. D. Colloidal Au-Enhanced Surface Plasmon Resonance for Ultrasensitive Detection of DNA Hybridization J. Am. Chem. Soc. 2000, 122, 9071
23. Zhou, W.; Chen, Y.; Corn, R. M. Ultrasensitive Microarray Detection of Short RNA Sequences with Enzymatically Modified Nanoparticles and Surface Plasmon Resonance Imaging Measurements Anal. Chem. 2011, 83, 3897
24. Lee, H. J.; Wark, A. W.; Corn, R. M. Enhanced Bioaffinity Sensing Using Surface Plasmons, Surface Enzyme Reactions, Nanoparticles and Diffraction Gratings Analyst 2008, 133, 596
25. Lai, Y. J.; Tseng, W. L. Role of 5-Thio-(2-nitrobenzoic acid)-Capped Gold Nanoparticles in the Sensing of Chromium(VI): Remover and Sensor Analyst 2011, 136, 2712
26. Chen, Y.; Nguyen, A.; Niu, L.; Corn, R. M. Fabrication of DNA Microarrays with Poly(L-glutamic acid) Monolayers on Gold Substrates for SPR Imaging Measurements Langmuir 2009, 25, 5054
27. Lee, H. J.; Li, Y.; Wark, A. W.; Corn, R. M. Enzymatically Amplified Surface Plasmon Resonance Imaging Detection of DNA by Exonuclease III Digestion of DNA Microarrays Anal. Chem. 2005, 77, 5096
28. Hong, S.; Na, Y. S.; Choi, S.; Song, I. T.; Kim, W. Y.; Lee, H. Non-Covalent Self-Assembly and Covalent Polymerization Co-Contribute to Polydopamine Formation Adv. Funct. Mater. 2012, 22, 4711
29. Peterson, A. W.; Heaton, R. J.; Georgiadis, R. M. The Effect of Surface Probe Density on DNA Hybridization Nucleic Acids Res. 2001, 29, 5163
30. Sendroiu, I. E.; Gifford, L. K.; Lupták, A.; Corn, R. M. Ultrasensitive DNA Microarray Biosensing via in Situ RNA Transcription-Based Amplification and Nanoparticle-Enhanced SPR Imaging J. Am. Chem. Soc. 2011, 133, 4271
31. Tawa, K.; Knoll, W. Mismatching Base-Pair Dependence of the Kinetics of DNA-DNA Hybridization Studied by Surface Plasmon Fluorescence Spectroscopy Nucleic Acids Res. 2004, 32, 2372
32. Chen, Y.; Corn, R. M. Dnazyme Footprinting: Detecting Protein-Aptamer Complexation on Surfaces by Blocking DNAzyme Cleavage Activity J. Am. Chem. Soc. 2013, 135, 2072
33. Li, Y.; Liu, M.; Xiang, C.; Xie, Q.; Yao, S. Electrochemical Quartz Crystal Microbalance Study on Growth and Property of the Polymer Deposit at Gold Electrodes during Oxidation of Dopamine in Aqueous Solutions Thin Solid Films 2006, 497, 270