Global gene expression in coprinopsis cinerea meiotic mutants reflects checkpoint arrest

G3: Genes, Genomes, Genetics

Volumn 2, Issue 10, 2012, Pages 1213-1221

  Anderson, Erika ^a   Burns, Claire ^a,b   Zolan, Miriam E ^a  

^a INDIANA UNIVERSITY   (United States)

^b WASHINGTON AND JEFFERSON COLLEGE   (United States)

Author keywords

Checkpoint arrest; Meiotic S phase; Microarray analysis; MRN complex; Mushroom development

Indexed keywords

DNA BINDING PROTEIN; FUNGAL PROTEIN;

ARTICLE; CELL CYCLE CHECKPOINT; COPRINUS; DNA REPLICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; MEIOSIS; METABOLISM; MUTATION;

CELL CYCLE CHECKPOINTS; COPRINUS; DNA REPLICATION; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; MEIOSIS; MUTATION;

EID: 84883145149     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.112.003046     Document Type: Article

References (45)

1. Acharya, S. N., A. M. Many, A. P. Schroeder, F. M. Kennedy, O. P. Savytskyy et al., 2008 Coprinus cinereus rad50 mutants reveal an essential structural role for Rad50 in axial element and synaptonemal complex formation, homolog pairing and meiotic recombination. Genetics 180: 1889-1907.
2. Borde, V., A. S. Goldman, and M. Lichten, 2000 Direct coupling between meiotic DNA replication and recombination initiation. Science 290: 806- 809.
3. Borner, G. V., N. Kleckner, and N. Hunter, 2004 Crossover/noncrossover differentiation, synaptonemal complex formation, and regulatory surveillance at the leptotene/zygotene transition of meiosis. Cell 117: 29-45.
4. Bousset, K., and J. F. Diffley, 1998 The Cdc7 protein kinase is required for origin firing during S phase. Genes Dev. 12: 480-490.
5. Broad Institute of Harvard and MIT. Coprinopsis cinerea Sequencing Project. Available at: http://www.broadinstitute.org/.
6. Burns, C., J. E. Stajich, A. Rechtsteiner, L. Casselton, S. E. Hanlon et al., 2010 Analysis of the basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution. PLoS Genet. 6: pii: e1001135.
7. Chu, S., J. Derisi, M. Eisen, J. Mulholland, D. Botstein et al., 1998 The transcriptional program of sporulation in budding yeast. Science 282: 699-705.
8. De Vries, S., E. Baart, M. Dekker, A. Siezen, D. De Rooij et al., 1999 Mouse MutS-like protein Msh5 is required for proper chromosome synapsis in male and female meiosis. Genes Dev. 13: 523-531.
9. Dunkler, A., S. Jorde, and J. Wendland, 2008 An Ashbya gossypii cts2 mutant deficient in a sporulation-specific chitinase can be complemented by Candida albicans CHT4. Microbiol. Res. 163: 701-710.
10. Elledge, S. J., Z. Zhou, J. B. Allen, and T. A. Navas, 1993 DNA damage and cell cycle regulation of ribonucleotide reductase. Bioessays 15: 333-339.
11. Foiani, M., C. Santocanale, P. Plevani, and G. Lucchini, 1989 A single essential gene, PRI2, encodes the large subunit of DNA primase in Saccharomyces cerevisiae. Mol. Cell. Biol. 9: 3081-3087.
12. Freedman, R. B., 1989 Protein disulfide isomerase: multiple roles in the modification of nascent secretory proteins. Cell 57: 1069-1072.
13. Hochwagen, A., and A. Amon, 2006 Checking your breaks: Surveillance mechanisms of meiotic recombination. Curr. Biol. 16: R217-R228.
14. Hopfner, K. P., L. Craig, G. Moncalian, R. A. Zinkel, T. Usui et al., 2002 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 418: 562-566.
15. Huang, M., Z. Zhou, and S. J. Elledge, 1998 The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor. Cell 94: 595-605.
16. Kamada, T., S. Miyazaki, and T. Takemaru, 1976 Quantitative changes of DNA, RNA and protein during basidiocarp maturation in Coprinus macrorhizus. Trans. Mycol. Soc. Jpn. 17: 451-460.
17. Kanda, T., H. Arakawa, Y. Yasuda, and T. Takemaru, 1990 Basidiospore formation in a mutant of incompatibility factors and in mutants that arrest at meta-anaphase I in Coprinus cinereus. Exp. Mycol. 14: 218-226.
18. Kues, U., 2000 Life history and developmental processes in the basidiomycete Coprinus cinereus. Microbiol. Mol. Biol. Rev. 64: 316-353.
19. Kugou, K., H. Sasanuma, K. Matsumoto, K. Shirahige, and K. Ohta, 2007 Mre11 mediates gene regulation in yeast spore development. Genes Genet. Syst. 82: 21-33.
20. Longhese, M. P., P. Plevani, and G. Lucchini, 1994 Replication factor A is required in vivo for DNA replication, repair, and recombination. Mol. Cell. Biol. 14: 7884-7890.
21. Lu, B. C., and D. Y. Jeng, 1975 Meiosis in Coprinus VII. The prekaryogamy S-phase and the postkaryogamy DNA replication in C. lagopus. J. Cell Sci. 17: 461-470.
22. Lu, B. C., N. Gallo, and U. Kues, 2003 White-cap mutants and meiotic apoptosis in the basidiomycete Coprinus cinereus. Fungal Genet. Biol. 39: 82-93.
23. Lucchini, G., A. Biraghi, M. L. Carbone, A. De Scrilli, and G. E. Magni, 1978 Effect of mutation in the aromatic amino acid pathway on sporulation of Saccharomyces cerevisiae. J. Bacteriol. 136: 55-62.
24. Lynn, A., R. Soucek, and G. Borner, 2007 ZMM proteins during meiosis: crossover artists at work. Chromosome Res. 15: 591-605.
25. Marzluff, W., and R. Duronio, 2002 Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences. Curr. Opin. Cell Biol. 14: 692-699.
26. Mata, J., R. Lyne, G. Burns, and J. Bahler, 2002 The transcriptional program of meiosis and sporulation in fission yeast. Nat. Genet. 32: 143-147.
27. Murakami, H., and P. Nurse, 2001 Regulation of premeiotic S phase and recombination-related double-strand DNA breaks during meiosis in fission yeast. Nat. Genet. 28: 290-293.
28. Nakazawa, T., Y. Ando, K. Kitaaki, K. Nakahori, and T. Kamada, 2011 Efficient gene targeting in DCc.ku70 or DCc.lig4 mutants of the agaricomycete Coprinopsis cinerea. Fungal Genet. Biol. 48: 939-946.
29. Namekawa, S. H., K. Iwabata, H. Sugawara, F. N. Hamada, A. Koshiyama et al., 2005 Knockdown of LIM15/DMC1 in the mushroom Coprinus cinereus by double-stranded RNA-mediated gene silencing. Microbiology 151: 3669-3678.
30. Nicolette, M. L., K. Lee, Z. Guo, M. Rani, J. M. Chow et al., 2010 Mre11- Rad50-Xrs2 and Sae2 promote 59 strand resection of DNA double-strand breaks. Nat. Struct. Mol. Biol. 17: 1478-1485.
31. Popolo, L., M. Vai, E. Gatti, S. Porello, P. Bonfante et al., 1993 Physiological analysis of mutants indicates involvement of the Saccharomyces cerevisiae GPI-anchored protein gp115 in morphogenesis and cell separation. J. Bacteriol. 175: 1879-1885.
32. Pramila, T., W. Wu, S. Miles, W. S. Noble, and L. L. Breeden, 2006 The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. Genes Dev. 20: 2266-2278.
33. Primig, M., R. Williams, E. Winzeler, G. Tevzadze, A. Conway et al., 2000 The core meiotic transcriptome in budding yeasts. Nat. Genet. 26: 415-423.
34. Ramesh, M. A., and M. E. Zolan, 1995 Chromosome dynamics in rad12 mutants of Coprinus cinereus. Chromosoma 104: 189-202.
35. Redhead, S. A., R. Vilgalys, J. M. Moncalvo, J. Johnson, and J. S. Hopple, 2001 Coprinus Pers. and the disposition of Coprinus species sensu lato. Taxon 50: 203-241.
36. Schlecht, U., and M. Primig, 2003 Mining meiosis and gametogenesis with DNA microarrays. Reproduction 125: 447-456.
37. Stajich, J. E., S. K. Wilke, D. Ahren, C. H. Au, B. W. Birren et al., 2010 Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc. Natl. Acad. Sci. USA 107: 11889-11894.
38. Strahl-Bolsinger, S., T. Immervoll, R. Deutzmann, and W. Tanner, 1993 PMT1, the gene for a key enzyme of protein O-glycosylation in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 90: 8164-8168.
39. Tonami, Y., H. Murakami, K. Shirahige, and M. Nakanishi, 2005 A checkpoint control linking meiotic S phase and recombination initiation in fission yeast. Proc. Natl. Acad. Sci. USA 102: 5797-5801.
40. Trombetta, E. S., J. F. Simons, and A. Helenius, 1996 Endoplasmic reticulum glucosidase II is composed of a catalytic subunit, conserved from yeast to mammals, and a tightly bound noncatalytic HDEL-containing subunit. J. Biol. Chem. 271: 27509-27516.
41. Tye, B. K., 1999 MCM proteins in DNA replication. Annu. Rev. Biochem. 68: 649-686.
42. Usui, T., H. Ogawa, and J. H. Petrini, 2001 A DNA damage response pathway controlled by Tel1 and the Mre11 complex. Mol. Cell 7: 1255- 1266.
43. Valentine, G., Y. J. Wallace, F. R. Turner, and M. E. Zolan, 1995 Pathway analysis of radiation-sensitive meiotic mutants of Coprinus cinereus. Mol. Gen. Genet. 247: 169-179.
44. Vazquez De Aldana, C. R., J. Correa, P. San Segundo, A. Bueno, A. R. Nebreda et al., 1991 Nucleotide sequence of the exo-1,3-beta-glucanaseencoding gene, EXG1, of the yeast Saccharomyces cerevisiae. Gene 97: 173-182.
45. Walti, M. A., C. Villalba, R. M. Buser, A. Grunler, M. Aebi et al., 2006 Targeted gene silencing in the model mushroom Coprinopsis cinerea (Coprinus cinereus) by expression of homologous hairpin RNAs. Eukaryot. Cell 5: 732-744.