The Twin-Arginine subunit c in oscarella: Origin, evolution, and potential functional significance

Integrative and Comparative Biology

Volumn 53, Issue 3, 2013, Pages 495-502

  Pett, Walker ^a   Lavrov, Dennis V ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; IRON SULFUR PROTEIN; MITOCHONDRIAL DNA; RIESKE IRON-SULFUR PROTEIN; UBIQUINOL CYTOCHROME C REDUCTASE;

AMINO ACID SEQUENCE; ANIMAL; BAYES THEOREM; BIOLOGICAL MODEL; BIOLOGY; CONFERENCE PAPER; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPONGE (PORIFERA);

AMINO ACID SEQUENCE; ANIMALS; BAYES THEOREM; COMPUTATIONAL BIOLOGY; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX III; EVOLUTION, MOLECULAR; MEMBRANE TRANSPORT PROTEINS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

EID: 84883034303     PISSN: 15407063     EISSN: 15577023     Source Type: Journal    
DOI: 10.1093/icb/ict079     Document Type: Conference Paper

References (28)

1. Braun NA, Theg SM. 2008. The chloroplast Tat pathway transports substrates in the dark. J Biol Chem 283:8822-8.
2. Burger G, Forget L, Zhu Y, Gray MW, Lang BF. 2003. Unique mitochondrial genome architecture in unicellular relatives of animals. Proc Natl Acad Sci USA 100:892-7.
3. Burger G, Gray MW, Forget L, Lang BF. 2013. Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists. Genome Biol Evol 5:418-38.
4. Eswar N, Eramian D, Webb B, Shen M-Y, Sali A. 2008. Protein structure modeling with MODELLER. Methods Mol Biol 426:145-59.
5. Frickey T, Lupas AN. 2004. Phylogenetic analysis of AAA proteins. J Struct Biol 146:2-10.
6. Gazave E, Lapébie P, Ereskovsky AV, Vacelet J, Renard E, Cárdenas P, Borchiellini C. 2011. No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera. Hydrobiologia 687:3-10.
7. Gazave E, Lapébie P, Renard E, Vacelet J, Rocher C, Ereskovsky AV, Lavrov DV, Borchiellini C. 2010. Molecular phylogeny restores the supra-generic subdivision of homoscleromorph sponges (Porifera, Homoscleromorpha). PloS One 5:e14290.
8. Gazave E, Lavrov DV, Cabrol J, Renard E, Rocher C, Vacelet J, Adamska M, Borchiellini C, Ereskovsky AV. 2013. Systematics and Molecular Phylogeny of the Family Oscarellidae (Homoscleromorpha) with Description of Two New Oscarella Species. PLoS ONE 8:e63976.
9. Hemmrich G, Bosch TCG. 2008. Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation. BioEssays 30:1010-8.
10. Hinsley AP, Stanley NR, Palmer T, Berks BC. 2001. A naturally occurring bacterial Tat signal peptide lacking one of the "invariant" arginine residues of the consensus targeting motif. FEBS Lett 497:45-9.
11. Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511-8.
12. Lee PA, Tullman-Ercek D, Georgiou G. 2006. The bacterial twin-arginine translocation pathway. Ann Rev Microbiol 60:373-95.
13. Li W, Godzik A. 2006. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658-9.
14. Martin W, Herrmann R. 1998. Gene transfer from organelles to the nucleus: how much, what happens, and why? Plant Physiol 118:9-17.
15. Molik S, Karnauchov I, Weidlich C, Herrmann RG, Klösgen RB. 2001. The Rieske Fe/S protein of the cytochrome b6/f complex in chloroplasts: missing link in the evolution of protein transport pathways in chloroplasts? J Biol Chem 276:42761-6.
16. Palmer T, Berks BC. 2012. The twin-arginine translocation (Tat) protein export pathway. Nature reviews. Microbiology 10:483-96.
17. Peitzsch RM, Eisenberg M, Sharp KA, McLaughlin S. 1995. Calculations of the electrostatic potential adjacent to model phospholipid bilayers. Biophys J 68:729-38.
18. Philippe H, Derelle R, Lopez P, Pick K, Borchiellini C, Boury-Esnault N, Vacelet J, Renard E, Houliston E, Quéinnec E, et al. 2009. Phylogenomics revives traditional views on deep animal relationships. Curr Biol 19:706-12.
19. Pick KS, Philippe H, Schreiber F, et al. 2010. Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships. Mol Biol Evol 27:1983-7.
20. Rollauer SE, Tarry MJ, Graham JE, Jääskeläinen M, Jäger F, Johnson S, Krehenbrink M, Liu SM, Lukey MJ, Marcoux J, et al. 2012. Structure of the TatC core of the twin-arginine protein transport system. Nature 492:1-6.
21. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539-42.
22. The PyMOL Molecular Graphics System, Version 1.5.0.4. 2010.
23. Wagener N, Ackermann M, Funes S, Neupert W. 2011. A pathway of protein translocation in mitochondria mediated by the AAA-ATPase Bcs1. Mol Cell 44:191-202.
24. Wagener N, Neupert W. 2012. Bcs1, a AAA protein of the mitochondria with a role in the biogenesis of the respiratory chain. J Struct Biol 179:121-5.
25. Wang X, Lavrov DV. 2007. Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals. Mol Biol Evol 24:363-73.
26. Wu LF, Ize B, Chanal A, Quentin Y, Fichant G. 2000. Bacterial twin-arginine signal peptide-dependent protein translocation pathway: evolution and mechanism. J Mol Microbiol Biotechnol 2:179-89.
27. Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-91.
28. Yen M-R, Tseng Y-H, Nguyen EH, Wu L-F, Saier MH. 2002. Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system. Arch Microbiol 177:441-50.