-
1
-
-
0030577349
-
Non-random usage of 'degenerate' codons is related to protein three-dimensional structure
-
8980124 10.1016/S0014-5793(96)01287-2 1:CAS:528:DyaK28XntlOjtLo%3D
-
Adzhubei AA, Adzhubei IA, Krasheninnikov IA, Neidle S (1996) Non-random usage of 'degenerate' codons is related to protein three-dimensional structure. FEBS Lett 399(1-2):78-82
-
(1996)
FEBS Lett
, vol.399
, Issue.1-2
, pp. 78-82
-
-
Adzhubei, A.A.1
Adzhubei, I.A.2
Krasheninnikov, I.A.3
Neidle, S.4
-
2
-
-
38849083985
-
Hepatitis A virus mutant spectra under the selective pressure of monoclonal antibodies: Codon usage constraints limit capsid variability
-
18057242 10.1128/JVI.01842-07 1:CAS:528:DC%2BD1cXhvFartrY%3D
-
Aragones L, Bosch A, Pinto RM (2008) Hepatitis A virus mutant spectra under the selective pressure of monoclonal antibodies: codon usage constraints limit capsid variability. J Virol 82(4):1688-1700
-
(2008)
J Virol
, vol.82
, Issue.4
, pp. 1688-1700
-
-
Aragones, L.1
Bosch, A.2
Pinto, R.M.3
-
3
-
-
77950421701
-
Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid
-
10.1371/journal.ppat.1000797
-
Aragones L, Guix S, Ribes E, Bosch A, Pinto RM (2009) Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid. PLoS Pathog 6(3):e1000797
-
(2009)
PLoS Pathog
, vol.6
, Issue.3
, pp. 1000797
-
-
Aragones, L.1
Guix, S.2
Ribes, E.3
Bosch, A.4
Pinto, R.M.5
-
4
-
-
0020024572
-
Codon selection in yeast
-
7037777 1:CAS:528:DyaL38XitFWkt7w%3D
-
Bennetzen JL, Hall BD (1982) Codon selection in yeast. J Biol Chem 257(6):3026-3031
-
(1982)
J Biol Chem
, vol.257
, Issue.6
, pp. 3026-3031
-
-
Bennetzen, J.L.1
Hall, B.D.2
-
5
-
-
60849096653
-
A signal-anchor sequence stimulates signal recognition particle binding to ribosomes from inside the exit tunnel
-
19164516 10.1073/pnas.0808584106 1:CAS:528:DC%2BD1MXhvV2qtb8%3D
-
Berndt U, Oellerer S, Zhang Y, Johnson AE, Rospert S (2009) A signal-anchor sequence stimulates signal recognition particle binding to ribosomes from inside the exit tunnel. Proc Natl Acad Sci U S A 106(5):1398-1403
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.5
, pp. 1398-1403
-
-
Berndt, U.1
Oellerer, S.2
Zhang, Y.3
Johnson, A.E.4
Rospert, S.5
-
6
-
-
0029902243
-
Protein structure and the sequential structure of mRNA: Alpha-helix and beta-sheet signals at the nucleotide level
-
8811739 10.1002/(SICI)1097-0134(199606)25:2<237: AID-PROT9>3.3. CO;2-Y 1:CAS:528:DyaK28XktlShu7o%3D
-
Brunak S, Engelbrecht J (1996) Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level. Proteins 25(2):237-252
-
(1996)
Proteins
, vol.25
, Issue.2
, pp. 237-252
-
-
Brunak, S.1
Engelbrecht, J.2
-
7
-
-
0023126266
-
Coevolution of codon usage and transfer RNA abundance
-
2434856 10.1038/325728a0 1:CAS:528:DyaL2sXhtFClsb0%3D
-
Bulmer M (1987) Coevolution of codon usage and transfer RNA abundance. Nature 325(6106):728-730
-
(1987)
Nature
, vol.325
, Issue.6106
, pp. 728-730
-
-
Bulmer, M.1
-
8
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
1752426 1:CAS:528:DyaK38XhsVKhtL0%3D
-
Bulmer M (1991) The selection-mutation-drift theory of synonymous codon usage. Genetics 129(3):897-907
-
(1991)
Genetics
, vol.129
, Issue.3
, pp. 897-907
-
-
Bulmer, M.1
-
9
-
-
18144374835
-
Comparative genomics of foot-and-mouth disease virus
-
15858032 10.1128/JVI.79.10.6487-6504.2005 1:CAS:528:DC%2BD2MXkt1Whsr4%3D
-
Carrillo C, Tulman ER, Delhon G, Lu Z, Carreno A, Vagnozzi A, Kutish GF, Rock DL (2005) Comparative genomics of foot-and-mouth disease virus. J Virol 79(10):6487-6504
-
(2005)
J Virol
, vol.79
, Issue.10
, pp. 6487-6504
-
-
Carrillo, C.1
Tulman, E.R.2
Delhon, G.3
Lu, Z.4
Carreno, A.5
Vagnozzi, A.6
Kutish, G.F.7
Rock, D.L.8
-
10
-
-
0025348395
-
Suppression of the negative effect of minor arginine codons on gene expression; Preferential usage of minor codons within the first 25 codons of the Escherichia coli genes
-
2109307 10.1093/nar/18.6.1465 1:CAS:528:DyaK3cXitFWltLc%3D
-
Chen GF, Inouye M (1990) Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes. Nucleic Acids Res 18(6):1465-1473
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.6
, pp. 1465-1473
-
-
Chen, G.F.1
Inouye, M.2
-
11
-
-
0015967881
-
Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins
-
4358939 10.1021/bi00699a001 1:CAS:528:DyaE2cXmslKisQ%3D%3D
-
Chou PY, Fasman GD (1974) Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins. Biochemistry 13(2):211-222
-
(1974)
Biochemistry
, vol.13
, Issue.2
, pp. 211-222
-
-
Chou, P.Y.1
Fasman, G.D.2
-
12
-
-
0018110116
-
Prediction of the secondary structure of proteins from their amino acid sequence
-
364941 1:CAS:528:DyaE1MXkvFOjtQ%3D%3D
-
Chou PY, Fasman GD (1978) Prediction of the secondary structure of proteins from their amino acid sequence. Adv Enzymol Relat Areas Mol Biol 47:45-148
-
(1978)
Adv Enzymol Relat Areas Mol Biol
, vol.47
, pp. 45-148
-
-
Chou, P.Y.1
Fasman, G.D.2
-
13
-
-
54849441249
-
Rare codons cluster
-
18923675 10.1371/journal.pone.0003412
-
Clarke TF 4th, Clark PL (2008) Rare codons cluster. PLoS One 3(10):e3412
-
(2008)
PLoS One
, vol.3
, Issue.10
, pp. 3412
-
-
Clarke IV, T.F.1
Clark, P.L.2
-
14
-
-
55549128209
-
Serotype-specific differences in antigenic regions of foot-and-mouth disease virus (FMDV): A comprehensive statistical analysis
-
18790086 10.1016/j.meegid.2008.08.004 1:CAS:528:DC%2BD1cXhtlyhsb3P
-
Cooke JN, Westover KM (2008) Serotype-specific differences in antigenic regions of foot-and-mouth disease virus (FMDV): a comprehensive statistical analysis. Infect Genet Evol 8(6):855-863
-
(2008)
Infect Genet Evol
, vol.8
, Issue.6
, pp. 855-863
-
-
Cooke, J.N.1
Westover, K.M.2
-
15
-
-
0036295371
-
Silent mutations affect in vivo protein folding in Escherichia coli
-
12054634 10.1016/S0006-291X(02)00226-7 1:CAS:528:DC%2BD38XksVGhs7w%3D
-
Cortazzo P, Cervenansky C, Marin M, Reiss C, Ehrlich R, Deana A (2002) Silent mutations affect in vivo protein folding in Escherichia coli. Biochem Biophys Res Commun 293(1):537-541
-
(2002)
Biochem Biophys Res Commun
, vol.293
, Issue.1
, pp. 537-541
-
-
Cortazzo, P.1
Cervenansky, C.2
Marin, M.3
Reiss, C.4
Ehrlich, R.5
Deana, A.6
-
16
-
-
0013970637
-
A third antigenic component associated with foot-and-mouth disease infection
-
4958622 10.1016/0042-6822(66)90128-0 1:CAS:528:DyaF28XltVagsro%3D
-
Cowan KM, Graves JH (1966) A third antigenic component associated with foot-and-mouth disease infection. Virology 30(3):528-540
-
(1966)
Virology
, vol.30
, Issue.3
, pp. 528-540
-
-
Cowan, K.M.1
Graves, J.H.2
-
17
-
-
0030054216
-
Improving protein secondary structure prediction with aligned homologous sequences
-
8771202 10.1002/pro.5560050113
-
Di Francesco V, Garnier J, Munson PJ (1996) Improving protein secondary structure prediction with aligned homologous sequences. Protein Sci 5(1):106-113
-
(1996)
Protein Sci
, vol.5
, Issue.1
, pp. 106-113
-
-
Di Francesco, V.1
Garnier, J.2
Munson, P.J.3
-
18
-
-
0032802169
-
Sequence analysis of a porcine enterovirus serotype 1 isolate: Relationships with other picornaviruses
-
10466788 1:CAS:528:DyaK1MXlt1aqtb8%3D
-
Doherty M, Todd D, McFerran N, Hoey EM (1999) Sequence analysis of a porcine enterovirus serotype 1 isolate: relationships with other picornaviruses. J Gen Virol 80(Pt 8):1929-1941
-
(1999)
J Gen Virol
, vol.80
, Issue.PART 8
, pp. 1929-1941
-
-
Doherty, M.1
Todd, D.2
McFerran, N.3
Hoey, E.M.4
-
19
-
-
0344237338
-
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
-
14627830 10.1093/nar/gkg897
-
dos Reis M, Wernisch L, Savva R (2003) Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Res 31(23):6976-6985
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.23
, pp. 6976-6985
-
-
Dos Reis, M.1
Wernisch, L.2
Savva, R.3
-
20
-
-
70549097349
-
Structural insights into replication initiation and elongation processes by the FMDV RNA-dependent RNA polymerase
-
19914060 10.1016/j.sbi.2009.10.016 1:CAS:528:DC%2BD1MXhsV2gs77L
-
Ferrer-Orta C, Agudo R, Domingo E, Verdaguer N (2009) Structural insights into replication initiation and elongation processes by the FMDV RNA-dependent RNA polymerase. Curr Opin Struct Biol 19(6):752-758
-
(2009)
Curr Opin Struct Biol
, vol.19
, Issue.6
, pp. 752-758
-
-
Ferrer-Orta, C.1
Agudo, R.2
Domingo, E.3
Verdaguer, N.4
-
21
-
-
8744222695
-
Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA
-
15294895 10.1074/jbc.M405465200 1:CAS:528:DC%2BD2cXptFejtrg%3D
-
Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N (2004) Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA. J Biol Chem 279(45):47212-47221
-
(2004)
J Biol Chem
, vol.279
, Issue.45
, pp. 47212-47221
-
-
Ferrer-Orta, C.1
Arias, A.2
Perez-Luque, R.3
Escarmis, C.4
Domingo, E.5
Verdaguer, N.6
-
22
-
-
0035136006
-
Sequence analysis of the RNA polymerase gene of foot-and-mouth disease virus serotype Asia1
-
11210935 10.1023/A:1008174100886 1:CAS:528:DC%2BD3MXhtFWitb8%3D
-
George M, Venkataramanan R, Pattnaik B, Sanyal A, Gurumurthy CB, Hemadri D, Tosh C (2001) Sequence analysis of the RNA polymerase gene of foot-and-mouth disease virus serotype Asia1. Virus Genes 22(1):21-26
-
(2001)
Virus Genes
, vol.22
, Issue.1
, pp. 21-26
-
-
George, M.1
Venkataramanan, R.2
Pattnaik, B.3
Sanyal, A.4
Gurumurthy, C.B.5
Hemadri, D.6
Tosh, C.7
-
23
-
-
0030970289
-
Ribosomes and translation
-
9242921 10.1146/annurev.biochem.66.1.679 1:CAS:528:DyaK2sXktFOlsrg%3D
-
Green R, Noller HF (1997) Ribosomes and translation. Annu Rev Biochem 66:679-716
-
(1997)
Annu Rev Biochem
, vol.66
, pp. 679-716
-
-
Green, R.1
Noller, H.F.2
-
24
-
-
33846519298
-
A single-nucleotide synonymous mutation in the gag gene controlling human immunodeficiency virus type 1 virion production
-
17121798 10.1128/JVI.01596-06 1:CAS:528:DC%2BD2sXhtFCns7Y%3D
-
Hamano T, Matsuo K, Hibi Y, Victoriano AF, Takahashi N, Mabuchi Y, Soji T, Irie S, Sawanpanyalert P, Yanai H, Hara T, Yamazaki S, Yamamoto N, Okamoto T (2007) A single-nucleotide synonymous mutation in the gag gene controlling human immunodeficiency virus type 1 virion production. J Virol 81(3):1528-1533
-
(2007)
J Virol
, vol.81
, Issue.3
, pp. 1528-1533
-
-
Hamano, T.1
Matsuo, K.2
Hibi, Y.3
Victoriano, A.F.4
Takahashi, N.5
Mabuchi, Y.6
Soji, T.7
Irie, S.8
Sawanpanyalert, P.9
Yanai, H.10
Hara, T.11
Yamazaki, S.12
Yamamoto, N.13
Okamoto, T.14
-
25
-
-
0029992278
-
Molecular chaperones in cellular protein folding
-
8637592 10.1038/381571a0 1:CAS:528:DyaK28XjsFyltb8%3D
-
Hartl FU (1996) Molecular chaperones in cellular protein folding. Nature 381(6583):571-579
-
(1996)
Nature
, vol.381
, Issue.6583
, pp. 571-579
-
-
Hartl, F.U.1
-
26
-
-
0019474499
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
-
6167728 10.1016/0022-2836(81)90363-6 1:CAS:528:DyaL3MXitVGhsbY%3D
-
Ikemura T (1981a) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J Mol Biol 146(1):1-21
-
(1981)
J Mol Biol
, vol.146
, Issue.1
, pp. 1-21
-
-
Ikemura, T.1
-
27
-
-
0019824131
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
-
6175758 10.1016/0022-2836(81)90003-6 1:CAS:528:DyaL38Xks1ygsA%3D%3D
-
Ikemura T (1981b) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J Mol Biol 151(3):389-409
-
(1981)
J Mol Biol
, vol.151
, Issue.3
, pp. 389-409
-
-
Ikemura, T.1
-
28
-
-
0019949369
-
Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs
-
6750137 10.1016/0022-2836(82)90250-9 1:CAS:528:DyaL38Xlt1Whur8%3D
-
Ikemura T (1982) Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. J Mol Biol 158(4):573-597
-
(1982)
J Mol Biol
, vol.158
, Issue.4
, pp. 573-597
-
-
Ikemura, T.1
-
29
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
3916708 1:CAS:528:DyaL2MXhvFyksbk%3D
-
Ikemura T (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2(1):13-34
-
(1985)
Mol Biol Evol
, vol.2
, Issue.1
, pp. 13-34
-
-
Ikemura, T.1
-
30
-
-
0032719129
-
Sequence determination and phylogenetic analysis of RNA-dependent RNA polymerase (RdRp) of the porcine enterovirus 1 (PEV-1) Talfan strain
-
10542031 10.1007/s007050050709 1:CAS:528:DyaK1MXnsFWhtro%3D
-
Kaku Y, Yamada S, Murakami Y (1999) Sequence determination and phylogenetic analysis of RNA-dependent RNA polymerase (RdRp) of the porcine enterovirus 1 (PEV-1) Talfan strain. Arch Virol 144(9):1845-1852
-
(1999)
Arch Virol
, vol.144
, Issue.9
, pp. 1845-1852
-
-
Kaku, Y.1
Yamada, S.2
Murakami, Y.3
-
31
-
-
0034888743
-
Characterizations of highly expressed genes of four fast-growing bacteria
-
11489855 10.1128/JB.183.17.5025-5040.2001 1:CAS:528:DC%2BD3MXmtFKrsrs%3D
-
Karlin S, Mrazek J, Campbell A, Kaiser D (2001) Characterizations of highly expressed genes of four fast-growing bacteria. J Bacteriol 183(17):5025-5040
-
(2001)
J Bacteriol
, vol.183
, Issue.17
, pp. 5025-5040
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.3
Kaiser, D.4
-
32
-
-
0030595344
-
The "+70 pause": Hypothesis of a translational control of membrane protein assembly
-
8831781 10.1006/jmbi.1996.0500 1:CAS:528:DyaK28XmtVKms7g%3D
-
Kepes F (1996) The "+70 pause": hypothesis of a translational control of membrane protein assembly. J Mol Biol 262(2):77-86
-
(1996)
J Mol Biol
, vol.262
, Issue.2
, pp. 77-86
-
-
Kepes, F.1
-
33
-
-
0025787343
-
Ribosomes pause at specific sites during synthesis of membrane-bound chloroplast reaction center protein D1
-
1869532 1:CAS:528:DyaK3MXlsl2ls70%3D
-
Kim J, Klein PG, Mullet JE (1991) Ribosomes pause at specific sites during synthesis of membrane-bound chloroplast reaction center protein D1. J Biol Chem 266(23):14931-14938
-
(1991)
J Biol Chem
, vol.266
, Issue.23
, pp. 14931-14938
-
-
Kim, J.1
Klein, P.G.2
Mullet, J.E.3
-
34
-
-
33846504706
-
A "silent" polymorphism in the MDR1 gene changes substrate specificity
-
17185560 10.1126/science.1135308 1:CAS:528:DC%2BD2sXotFCitA%3D%3D
-
Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, Calcagno AM, Ambudkar SV, Gottesman MM (2007) A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 315(5811):525-528
-
(2007)
Science
, vol.315
, Issue.5811
, pp. 525-528
-
-
Kimchi-Sarfaty, C.1
Oh, J.M.2
Kim, I.W.3
Sauna, Z.E.4
Calcagno, A.M.5
Ambudkar, S.V.6
Gottesman, M.M.7
-
35
-
-
59749095991
-
Understanding the molecular epidemiology of foot-and-mouth-disease virus
-
19100342 10.1016/j.meegid.2008.11.005 1:CAS:528:DC%2BD1MXitVSgsL8%3D
-
Klein J (2009) Understanding the molecular epidemiology of foot-and-mouth-disease virus. Infect Genet Evol 9(2):153-161
-
(2009)
Infect Genet Evol
, vol.9
, Issue.2
, pp. 153-161
-
-
Klein, J.1
-
36
-
-
33846588874
-
Genetics. SNPs, silent but not invisible
-
17185559 10.1126/science.1138239 1:CAS:528:DC%2BD2sXhtFOqsLs%3D
-
Komar AA (2007) Genetics. SNPs, silent but not invisible. Science 315(5811):466-467
-
(2007)
Science
, vol.315
, Issue.5811
, pp. 466-467
-
-
Komar, A.A.1
-
37
-
-
58149199728
-
A pause for thought along the co-translational folding pathway
-
18996013 10.1016/j.tibs.2008.10.002 1:CAS:528:DC%2BD1MXktl2gsA%3D%3D
-
Komar AA (2009) A pause for thought along the co-translational folding pathway. Trends Biochem Sci 34(1):16-24
-
(2009)
Trends Biochem Sci
, vol.34
, Issue.1
, pp. 16-24
-
-
Komar, A.A.1
-
38
-
-
0032699491
-
Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation
-
10622731 10.1016/S0014-5793(99)01566-5 1:CAS:528:DyaK1MXnslGkuro%3D
-
Komar AA, Lesnik T, Reiss C (1999) Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. FEBS Lett 462(3):387-391
-
(1999)
FEBS Lett
, vol.462
, Issue.3
, pp. 387-391
-
-
Komar, A.A.1
Lesnik, T.2
Reiss, C.3
-
39
-
-
66849109240
-
The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins
-
19491936 10.1038/nsmb.1614 1:CAS:528:DC%2BD1MXms12msLg%3D
-
Kramer G, Boehringer D, Ban N, Bukau B (2009) The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins. Nat Struct Mol Biol 16(6):589-597
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.6
, pp. 589-597
-
-
Kramer, G.1
Boehringer, D.2
Ban, N.3
Bukau, B.4
-
40
-
-
0029062216
-
The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol
-
7601114 10.1111/j.1432-1033.1995.tb20527.x 1:CAS:528:DyaK2MXlvFalsLc%3D
-
Kubota H, Hynes G, Willison K (1995) The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol. Eur J Biochem 230(1):3-16
-
(1995)
Eur J Biochem
, vol.230
, Issue.1
, pp. 3-16
-
-
Kubota, H.1
Hynes, G.2
Willison, K.3
-
41
-
-
0023059773
-
A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations
-
3767992 10.1016/S0006-291X(86)80289-3 1:CAS:528:DyaL28XmtVCitb4%3D
-
Kypr J (1986) A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations. Biochem Biophys Res Commun 139(3):1094-1097
-
(1986)
Biochem Biophys Res Commun
, vol.139
, Issue.3
, pp. 1094-1097
-
-
Kypr, J.1
-
42
-
-
13444291526
-
Codon bias as a factor in regulating expression via translation rate in the human genome
-
15716084 10.1016/j.gene.2004.11.035 1:CAS:528:DC%2BD2MXhtFejtr4%3D
-
Lavner Y, Kotlar D (2005) Codon bias as a factor in regulating expression via translation rate in the human genome. Gene 345(1):127-138
-
(2005)
Gene
, vol.345
, Issue.1
, pp. 127-138
-
-
Lavner, Y.1
Kotlar, D.2
-
43
-
-
0033605790
-
Prevention measures against foot-and-mouth disease in Europe in recent years
-
10194835 10.1016/S0264-410X(98)00445-9 1:STN:280:DyaK1M3htVOguw%3D%3D
-
Leforban Y (1999) Prevention measures against foot-and-mouth disease in Europe in recent years. Vaccine 17(13-14):1755-1759
-
(1999)
Vaccine
, vol.17
, Issue.13-14
, pp. 1755-1759
-
-
Leforban, Y.1
-
44
-
-
0030057601
-
Chaperonin-mediated folding of actin and tubulin
-
8567715 10.1083/jcb.132.1.1 1:CAS:528:DyaK28Xlt1eksQ%3D%3D
-
Lewis SA, Tian G, Vainberg IE, Cowan NJ (1996) Chaperonin-mediated folding of actin and tubulin. J Cell Biol 132(1-2):1-4
-
(1996)
J Cell Biol
, vol.132
, Issue.1-2
, pp. 1-4
-
-
Lewis, S.A.1
Tian, G.2
Vainberg, I.E.3
Cowan, N.J.4
-
45
-
-
0016162558
-
Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins
-
4427384 10.1016/0022-2836(74)90405-7 1:CAS:528:DyaE2MXhtVOktbc%3D
-
Lim VI (1974) Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins. J Mol Biol 88(4):873-894
-
(1974)
J Mol Biol
, vol.88
, Issue.4
, pp. 873-894
-
-
Lim, V.I.1
-
46
-
-
0019406258
-
Isolation of a soluble and template-dependent foot-and-mouth disease virus RNA polymerase
-
6263001 10.1016/0042-6822(81)90650-4 1:CAS:528:DyaL3MXktVansbY%3D
-
Lowe PA, Brown F (1981) Isolation of a soluble and template-dependent foot-and-mouth disease virus RNA polymerase. Virology 111(1):23-32
-
(1981)
Virology
, vol.111
, Issue.1
, pp. 23-32
-
-
Lowe, P.A.1
Brown, F.2
-
47
-
-
0036908375
-
Distribution of rare triplets along mRNA and their relation to protein folding
-
12437379 10.1080/07391102.2002.10506859 1:CAS:528:DC%2BD3sXjsVCm
-
Makhoul CH, Trifonov EN (2002) Distribution of rare triplets along mRNA and their relation to protein folding. J Biomol Struct Dyn 20(3):413-420
-
(2002)
J Biomol Struct Dyn
, vol.20
, Issue.3
, pp. 413-420
-
-
Makhoul, C.H.1
Trifonov, E.N.2
-
48
-
-
0021807074
-
Sequence of the viral replicase gene from foot-and-mouth disease virus C1-Santa Pau (C-S8)
-
2993105 10.1016/0378-1119(85)90157-X 1:CAS:528:DyaL2MXltlKitro%3D
-
Martinez-Salas E, Ortin J, Domingo E (1985) Sequence of the viral replicase gene from foot-and-mouth disease virus C1-Santa Pau (C-S8). Gene 35(1-2):55-61
-
(1985)
Gene
, vol.35
, Issue.1-2
, pp. 55-61
-
-
Martinez-Salas, E.1
Ortin, J.2
Domingo, E.3
-
49
-
-
0033564861
-
The positive relationship between codon usage bias and translation initiation AUG context in Saccharomyces cerevisiae
-
10392441 10.1002/(SICI)1097-0061(19990615)15:8<633: AID-YEA407>3.0.CO;2-O 1:CAS:528:DyaK1MXktVahurg%3D
-
Miyasaka H (1999) The positive relationship between codon usage bias and translation initiation AUG context in Saccharomyces cerevisiae. Yeast 15(8):633-637
-
(1999)
Yeast
, vol.15
, Issue.8
, pp. 633-637
-
-
Miyasaka, H.1
-
50
-
-
0342614926
-
Codon usage tabulated from international DNA sequence databases: Status for the year 2000
-
10592250 10.1093/nar/28.1.292 1:CAS:528:DC%2BD3cXhvVKjtLk%3D
-
Nakamura Y, Gojobori T, Ikemura T (2000) Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res 28(1):292
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 292
-
-
Nakamura, Y.1
Gojobori, T.2
Ikemura, T.3
-
51
-
-
0018712607
-
Purification and identification of the RNA-dependent RNA polymerase of foot-and-mouth disease virus
-
232134 10.1099/0022-1317-45-2-497 1:CAS:528:DyaL3cXltl2qtg%3D%3D
-
Newman JF, Cartwright B, Doel TR, Brown F (1979) Purification and identification of the RNA-dependent RNA polymerase of foot-and-mouth disease virus. J Gen Virol 45(2):497-507
-
(1979)
J Gen Virol
, vol.45
, Issue.2
, pp. 497-507
-
-
Newman, J.F.1
Cartwright, B.2
Doel, T.R.3
Brown, F.4
-
52
-
-
0032493780
-
Specific correlations between relative synonymous codon usage and protein secondary structure
-
9680473 10.1006/jmbi.1998.1921 1:CAS:528:DyaK1cXlsFCkurc%3D
-
Oresic M, Shalloway D (1998) Specific correlations between relative synonymous codon usage and protein secondary structure. J Mol Biol 281(1):31-48
-
(1998)
J Mol Biol
, vol.281
, Issue.1
, pp. 31-48
-
-
Oresic, M.1
Shalloway, D.2
-
53
-
-
0038278911
-
Mutagenesis versus inhibition in the efficiency of extinction of foot-and-mouth disease virus
-
12768034 10.1128/JVI.77.12.7131-7138.2003 1:CAS:528:DC%2BD3sXksFGhtLc%3D
-
Pariente N, Airaksinen A, Domingo E (2003) Mutagenesis versus inhibition in the efficiency of extinction of foot-and-mouth disease virus. J Virol 77(12):7131-7138
-
(2003)
J Virol
, vol.77
, Issue.12
, pp. 7131-7138
-
-
Pariente, N.1
Airaksinen, A.2
Domingo, E.3
-
54
-
-
0023659927
-
The efficiency of folding of some proteins is increased by controlled rates of translation in vivo. A hypothesis
-
3298659 10.1016/0022-2836(87)90230-0 1:CAS:528:DyaL2sXitV2ltLg%3D
-
Purvis IJ, Bettany AJ, Santiago TC, Coggins JR, Duncan K, Eason R, Brown AJ (1987) The efficiency of folding of some proteins is increased by controlled rates of translation in vivo. A hypothesis. J Mol Biol 193(2):413-417
-
(1987)
J Mol Biol
, vol.193
, Issue.2
, pp. 413-417
-
-
Purvis, I.J.1
Bettany, A.J.2
Santiago, T.C.3
Coggins, J.R.4
Duncan, K.5
Eason, R.6
Brown, A.J.7
-
55
-
-
0023803244
-
Predicting the secondary structure of globular proteins using neural network models
-
3172241 10.1016/0022-2836(88)90564-5 1:CAS:528:DyaL1MXhtlWksb0%3D
-
Qian N, Sejnowski TJ (1988) Predicting the secondary structure of globular proteins using neural network models. J Mol Biol 202(4):865-884
-
(1988)
J Mol Biol
, vol.202
, Issue.4
, pp. 865-884
-
-
Qian, N.1
Sejnowski, T.J.2
-
56
-
-
0020522519
-
Identification of amino acid and nucleotide sequence of the foot-and-mouth disease virus RNA polymerase
-
6305004 10.1016/S0042-6822(83)80017-8 1:CAS:528:DyaL3sXksV2msbs%3D
-
Robertson BH, Morgan DO, Moore DM, Grubman MJ, Card J, Fischer T, Weddell G, Dowbenko D, Yansura D (1983) Identification of amino acid and nucleotide sequence of the foot-and-mouth disease virus RNA polymerase. Virology 126(2):614-623
-
(1983)
Virology
, vol.126
, Issue.2
, pp. 614-623
-
-
Robertson, B.H.1
Morgan, D.O.2
Moore, D.M.3
Grubman, M.J.4
Card, J.5
Fischer, T.6
Weddell, G.7
Dowbenko, D.8
Yansura, D.9
-
57
-
-
78049403925
-
Synonymous codon usage influences the local protein structure observed
-
20530529 10.1093/nar/gkq495 1:CAS:528:DC%2BC3cXhtlKltLjF
-
Saunders R, Deane CM (2010) Synonymous codon usage influences the local protein structure observed. Nucleic Acids Res 38(19):6719-6728
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.19
, pp. 6719-6728
-
-
Saunders, R.1
Deane, C.M.2
-
58
-
-
0023650543
-
The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
-
3547335 10.1093/nar/15.3.1281 1:CAS:528:DyaL2sXhtlejtrc%3D
-
Sharp PM, Li WH (1987) The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15(3):1281-1295
-
(1987)
Nucleic Acids Res
, vol.15
, Issue.3
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
59
-
-
0023046874
-
Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
-
3526280 10.1093/nar/14.13.5125 1:CAS:528:DyaL28Xlt1yksbc%3D
-
Sharp PM, Tuohy TM, Mosurski KR (1986) Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res 14(13):5125-5143
-
(1986)
Nucleic Acids Res
, vol.14
, Issue.13
, pp. 5125-5143
-
-
Sharp, P.M.1
Tuohy, T.M.2
Mosurski, K.R.3
-
60
-
-
0029908504
-
Protein secondary structural types are differentially coded on messenger RNA
-
8897597 10.1002/pro.5560051003 1:CAS:528:DyaK28Xmt1Cnt78%3D
-
Thanaraj TA, Argos P (1996a) Protein secondary structural types are differentially coded on messenger RNA. Protein Sci 5(10):1973-1983
-
(1996)
Protein Sci
, vol.5
, Issue.10
, pp. 1973-1983
-
-
Thanaraj, T.A.1
Argos, P.2
-
61
-
-
0030018101
-
Ribosome-mediated translational pause and protein domain organization
-
8844849 10.1002/pro.5560050814 1:CAS:528:DyaK28XkvVWhu7g%3D
-
Thanaraj TA, Argos P (1996b) Ribosome-mediated translational pause and protein domain organization. Protein Sci 5(8):1594-1612
-
(1996)
Protein Sci
, vol.5
, Issue.8
, pp. 1594-1612
-
-
Thanaraj, T.A.1
Argos, P.2
-
62
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
7984417 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
63
-
-
0024334889
-
The multiple codes of nucleotide sequences
-
2673451 1:CAS:528:DyaL1MXlsVyjsr0%3D
-
Trifonov EN (1989) The multiple codes of nucleotide sequences. Bull Math Biol 51(4):417-432
-
(1989)
Bull Math Biol
, vol.51
, Issue.4
, pp. 417-432
-
-
Trifonov, E.N.1
-
64
-
-
0021764898
-
Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains
-
6084718 10.1016/0022-2836(84)90027-5 1:CAS:528:DyaL2MXptFGhug%3D%3D
-
Varenne S, Buc J, Lloubes R, Lazdunski C (1984) Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains. J Mol Biol 180(3):549-576
-
(1984)
J Mol Biol
, vol.180
, Issue.3
, pp. 549-576
-
-
Varenne, S.1
Buc, J.2
Lloubes, R.3
Lazdunski, C.4
-
65
-
-
0024279635
-
3D gene of foot-and-mouth disease virus. Conservation by convergence of average sequences
-
3225850 10.1016/0022-2836(88)90367-1 1:CAS:528:DyaL1MXovFGntg%3D%3D
-
Villaverde A, Martinez-Salas E, Domingo E (1988) 3D gene of foot-and-mouth disease virus. Conservation by convergence of average sequences. J Mol Biol 204(3):771-776
-
(1988)
J Mol Biol
, vol.204
, Issue.3
, pp. 771-776
-
-
Villaverde, A.1
Martinez-Salas, E.2
Domingo, E.3
-
66
-
-
77956694182
-
Cell biology. New roles for codon usage
-
20847254 10.1126/science.1195567 1:CAS:528:DC%2BC3cXht12rtLbJ
-
Weygand-Durasevic I, Ibba M (2010) Cell biology. New roles for codon usage. Science 329(5998):1473-1474
-
(2010)
Science
, vol.329
, Issue.5998
, pp. 1473-1474
-
-
Weygand-Durasevic, I.1
Ibba, M.2
-
67
-
-
0025318864
-
The 'effective number of codons' used in a gene
-
2110097 10.1016/0378-1119(90)90491-9 1:CAS:528:DyaK3cXktVWmsbo%3D
-
Wright F (1990) The 'effective number of codons' used in a gene. Gene 87(1):23-29
-
(1990)
Gene
, vol.87
, Issue.1
, pp. 23-29
-
-
Wright, F.1
-
68
-
-
0031947053
-
Complete protein linkage map of poliovirus P3 proteins: Interaction of polymerase 3Dpol with VPg and with genetic variants of 3AB
-
9658121 1:CAS:528:DyaK1cXks1Cjsbg%3D
-
Xiang W, Cuconati A, Hope D, Kirkegaard K, Wimmer E (1998) Complete protein linkage map of poliovirus P3 proteins: interaction of polymerase 3Dpol with VPg and with genetic variants of 3AB. J Virol 72(8):6732-6741
-
(1998)
J Virol
, vol.72
, Issue.8
, pp. 6732-6741
-
-
Xiang, W.1
Cuconati, A.2
Hope, D.3
Kirkegaard, K.4
Wimmer, E.5
-
69
-
-
0031697801
-
The relationship between synonymous codon usage and protein structure
-
9738458 1:STN:280:DyaK1cvgvVygug%3D%3D
-
Xie T, Ding D (1998) The relationship between synonymous codon usage and protein structure. FEBS Lett 434(1-2):93-96
-
(1998)
FEBS Lett
, vol.434
, Issue.1-2
, pp. 93-96
-
-
Xie, T.1
Ding, D.2
-
70
-
-
0030067872
-
The signal recognition particle receptor alpha subunit assembles co-translationally on the endoplasmic reticulum membrane during an mRNA-encoded translation pause in vitro
-
8598200 1:CAS:528:DyaK28XlsVKgug%3D%3D
-
Young JC, Andrews DW (1996) The signal recognition particle receptor alpha subunit assembles co-translationally on the endoplasmic reticulum membrane during an mRNA-encoded translation pause in vitro. EMBO J 15(1):172-181
-
(1996)
EMBO J
, vol.15
, Issue.1
, pp. 172-181
-
-
Young, J.C.1
Andrews, D.W.2
-
71
-
-
0029432408
-
Discontinuous translation and mRNA secondary structure
-
Zama M (1995) Discontinuous translation and mRNA secondary structure. Nucleic Acids Symp Ser (34):97-98
-
(1995)
Nucleic Acids Symp ser
, vol.34
, pp. 97-98
-
-
Zama, M.1
-
72
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
19198590 10.1038/nsmb.1554 1:CAS:528:DC%2BD1MXhsFerurw%3D
-
Zhang G, Hubalewska M, Ignatova Z (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 16(3):274-280
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.3
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
-
73
-
-
0026771388
-
Hybrid system for protein secondary structure prediction
-
1613789 10.1016/0022-2836(92)90104-R 1:CAS:528:DyaK38XltVOktrg%3D
-
Zhang X, Mesirov JP, Waltz DL (1992) Hybrid system for protein secondary structure prediction. J Mol Biol 225(4):1049-1063
-
(1992)
J Mol Biol
, vol.225
, Issue.4
, pp. 1049-1063
-
-
Zhang, X.1
Mesirov, J.P.2
Waltz, D.L.3
-
74
-
-
35548932951
-
Mutation pressure shapes codon usage in the GC-Rich genome of foot-and-mouth disease virus
-
17768673 10.1007/s11262-007-0159-z 1:CAS:528:DC%2BD2sXht1agsL3M
-
Zhong J, Li Y, Zhao S, Liu S, Zhang Z (2007) Mutation pressure shapes codon usage in the GC-Rich genome of foot-and-mouth disease virus. Virus Genes 35(3):767-776
-
(2007)
Virus Genes
, vol.35
, Issue.3
, pp. 767-776
-
-
Zhong, J.1
Li, Y.2
Zhao, S.3
Liu, S.4
Zhang, Z.5
-
75
-
-
80053563115
-
The codon usage model of the context flanking each cleavage site in the polyprotein of foot-and-mouth disease virus
-
21801856 10.1016/j.meegid.2011.07.014 1:CAS:528:DC%2BC3MXht1yltrzP
-
Zhou JH, Zhang J, Chen HT, Ma LN, Ding YZ, Pejsak Z, Liu YS (2011) The codon usage model of the context flanking each cleavage site in the polyprotein of foot-and-mouth disease virus. Infect Genet Evol 11:1815-1819
-
(2011)
Infect Genet Evol
, vol.11
, pp. 1815-1819
-
-
Zhou, J.H.1
Zhang, J.2
Chen, H.T.3
Ma, L.N.4
Ding, Y.Z.5
Pejsak, Z.6
Liu, Y.S.7
-
76
-
-
77955486401
-
Analysis of synonymous codon usage in foot-and-mouth disease virus
-
20425142 10.1007/s11259-010-9359-4
-
Zhou JH, Zhang J, Chen HT, Ma LN, Liu YS (2010a) Analysis of synonymous codon usage in foot-and-mouth disease virus. Vet Res Commun 34(4):393-404
-
(2010)
Vet Res Commun
, vol.34
, Issue.4
, pp. 393-404
-
-
Zhou, J.H.1
Zhang, J.2
Chen, H.T.3
Ma, L.N.4
Liu, Y.S.5
-
77
-
-
77953621837
-
Characteristics of codon usage bias in two regions downstream of the initiation codons of foot-and-mouth disease virus
-
20398725 10.1016/j.biosystems.2010.04.001 1:CAS:528:DC%2BC3cXntVCktr0%3D
-
Zhou JH, Zhang J, Ding YZ, Chen HT, Ma LN, Liu YS (2010b) Characteristics of codon usage bias in two regions downstream of the initiation codons of foot-and-mouth disease virus. Biosystems 101(1):20-28
-
(2010)
Biosystems
, vol.101
, Issue.1
, pp. 20-28
-
-
Zhou, J.H.1
Zhang, J.2
Ding, Y.Z.3
Chen, H.T.4
Ma, L.N.5
Liu, Y.S.6
|