-
1
-
-
0033048747
-
Campylobacter jejuni--an emerging foodborne pathogen
-
doi:10.3201/eid0501.990104
-
Altekruse SF, Stern NJ, Fields PI, Swerdlow DL, (1999) Campylobacter jejuni--an emerging foodborne pathogen. Emerg Infect Dis 5: 28-35. doi:10.3201/eid0501.990104. PubMed: 10081669.
-
(1999)
Emerg Infect Dis
, vol.5
, pp. 28-35
-
-
Altekruse, S.F.1
Stern, N.J.2
Fields, P.I.3
Swerdlow, D.L.4
-
2
-
-
0037023234
-
The physiology of Campylobacter species and its relevance to their role as foodborne pathogens
-
doi:10.1016/S0168-1605(01)00678-X
-
Park SF, (2002) The physiology of Campylobacter species and its relevance to their role as foodborne pathogens. Int J Food Microbiol 74: 177-188. doi:10.1016/S0168-1605(01)00678-X. PubMed: 11981968.
-
(2002)
Int J Food Microbiol
, vol.74
, pp. 177-188
-
-
Park, S.F.1
-
3
-
-
0002665065
-
Campylobacter in the Food Supply
-
[!(surname)!], NachamkinISzymanskiCMBlaserMJ. Washington, DC: ASM Press., Washington, DC, ASM Press
-
Jacobs-Reitsma WL, [!(surname)!], Wagenaar J, (2000) Campylobacter in the Food Supply; Nachamkin I, Szymanski CM, Blaser MJ, eds. Washington, DC: ASM Press.
-
(2000)
-
-
Jacobs-Reitsma, W.L.1
Wagenaar, J.2
-
4
-
-
62649160554
-
A Campylobacter jejuni znuA orthologue is essential for growth in low-zinc environments and chick colonization
-
doi:10.1128/JB.01394-08
-
Davis LM, Kakuda T, DiRita VJ, (2009) A Campylobacter jejuni znuA orthologue is essential for growth in low-zinc environments and chick colonization. J Bacteriol 191: 1631-1640. doi:10.1128/JB.01394-08. PubMed: 19103921.
-
(2009)
J Bacteriol
, vol.191
, pp. 1631-1640
-
-
Davis, L.M.1
Kakuda, T.2
DiRita, V.J.3
-
5
-
-
1942532926
-
Identification of Campylobacter jejuni genes involved in commensal colonization of the chick gastrointestinal tract
-
doi:10.1111/j.1365-2958.2004.03988.x
-
Hendrixson DR, DiRita VJ, (2004) Identification of Campylobacter jejuni genes involved in commensal colonization of the chick gastrointestinal tract. Mol Microbiol 52: 471-484. doi:10.1111/j.1365-2958.2004.03988.x. PubMed: 15066034.
-
(2004)
Mol Microbiol
, vol.52
, pp. 471-484
-
-
Hendrixson, D.R.1
DiRita, V.J.2
-
6
-
-
0027234632
-
Colonization of chicks by motility mutants of Campylobacter jejuni demonstrates the importance of flagellin A expression
-
doi:10.1099/00221287-139-6-1171
-
Wassenaar TM, van der Zeijst BA, Ayling R, Newell DG, (1993) Colonization of chicks by motility mutants of Campylobacter jejuni demonstrates the importance of flagellin A expression. J Gen Microbiol 1396:: 1171-1175. doi:10.1099/00221287-139-6-1171. PubMed: 8360610.
-
(1993)
J Gen Microbiol
, vol.139
, pp. 1171-1175
-
-
Wassenaar, T.M.1
van der Zeijst, B.A.2
Ayling, R.3
Newell, D.G.4
-
7
-
-
67349169333
-
The role of respiratory donor enzymes in Campylobacter jejuni host colonization and physiology
-
doi:10.1016/j.micpath.2009.04.009
-
Weerakoon DR, Borden NJ, Goodson CM, Grimes J, Olson JW, (2009) The role of respiratory donor enzymes in Campylobacter jejuni host colonization and physiology. Microb Pathog 47: 8-15. doi:10.1016/j.micpath.2009.04.009. PubMed: 19397993.
-
(2009)
Microb Pathog
, vol.47
, pp. 8-15
-
-
Weerakoon, D.R.1
Borden, N.J.2
Goodson, C.M.3
Grimes, J.4
Olson, J.W.5
-
8
-
-
40549083689
-
Role of Campylobacter jejuni respiratory oxidases and reductases in host colonization
-
doi:10.1128/AEM.02261-07
-
Weingarten RA, Grimes JL, Olson JW, (2008) Role of Campylobacter jejuni respiratory oxidases and reductases in host colonization. Appl Environ Microbiol 74: 1367-1375. doi:10.1128/AEM.02261-07. PubMed: 18192421.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1367-1375
-
-
Weingarten, R.A.1
Grimes, J.L.2
Olson, J.W.3
-
9
-
-
0034628526
-
The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
-
doi:10.1038/35001088
-
Parkhill J, Wren BW, Mungall K, Ketley JM, Churcher C, et al. (2000) The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Nature 403: 665-668. doi:10.1038/35001088. PubMed: 10688204.
-
(2000)
Nature
, vol.403
, pp. 665-668
-
-
Parkhill, J.1
Wren, B.W.2
Mungall, K.3
Ketley, J.M.4
Churcher, C.5
-
10
-
-
35948969184
-
The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828)
-
doi:10.1128/JB.01404-07
-
Pearson BM, Gaskin DJ, Segers RP, Wells JM, Nuijten PJ, et al. (2007) The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828). J Bacteriol 189: 8402-8403. doi:10.1128/JB.01404-07. PubMed: 17873037.
-
(2007)
J Bacteriol
, vol.189
, pp. 8402-8403
-
-
Pearson, B.M.1
Gaskin, D.J.2
Segers, R.P.3
Wells, J.M.4
Nuijten, P.J.5
-
11
-
-
20044387762
-
Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species
-
doi:10.1371/journal.pbio.0030015
-
Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, et al. (2005) Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species. PLOS Biol 3: e15. doi:10.1371/journal.pbio.0030015. PubMed: 15660156.
-
(2005)
PLOS Biol
, vol.3
-
-
Fouts, D.E.1
Mongodin, E.F.2
Mandrell, R.E.3
Miller, W.G.4
Rasko, D.A.5
-
12
-
-
0344171894
-
A novel Campylobacter jejuni two-component regulatory system important for temperature-dependent growth and colonization
-
PubMed:10322038
-
Brás AM, Chatterjee S, Wren BW, Newell DG, Ketley JM, (1999) A novel Campylobacter jejuni two-component regulatory system important for temperature-dependent growth and colonization. J Bacteriol 181: 3298-3302. PubMed: 10322038.
-
(1999)
J Bacteriol
, vol.181
, pp. 3298-3302
-
-
Brás, A.M.1
Chatterjee, S.2
Wren, B.W.3
Newell, D.G.4
Ketley, J.M.5
-
13
-
-
0022356473
-
Reversible expression of flagella in Campylobacter jejuni
-
PubMed:4066041
-
Caldwell MB, Guerry P, Lee EC, Burans JP, Walker RI, (1985) Reversible expression of flagella in Campylobacter jejuni. Infect Immun 50: 941-943. PubMed: 4066041.
-
(1985)
Infect Immun
, vol.50
, pp. 941-943
-
-
Caldwell, M.B.1
Guerry, P.2
Lee, E.C.3
Burans, J.P.4
Walker, R.I.5
-
14
-
-
3042855363
-
Iron acquisition and regulation in Campylobacter jejuni
-
doi:10.1128/JB.186.14.4714-4729.2004
-
Palyada K, Threadgill D, Stintzi A, (2004) Iron acquisition and regulation in Campylobacter jejuni. J Bacteriol 186: 4714-4729. doi:10.1128/JB.186.14.4714-4729.2004. PubMed: 15231804.
-
(2004)
J Bacteriol
, vol.186
, pp. 4714-4729
-
-
Palyada, K.1
Threadgill, D.2
Stintzi, A.3
-
15
-
-
32244448921
-
Transcriptional and translational expression patterns associated with immobilized growth of Campylobacter jejuni
-
doi:10.1099/mic.0.28405-0
-
Sampathkumar B, Napper S, Carrillo CD, Willson P, Taboada E, et al. (2006) Transcriptional and translational expression patterns associated with immobilized growth of Campylobacter jejuni. Microbiology 152: 567-577. doi:10.1099/mic.0.28405-0. PubMed: 16436444.
-
(2006)
Microbiology
, vol.152
, pp. 567-577
-
-
Sampathkumar, B.1
Napper, S.2
Carrillo, C.D.3
Willson, P.4
Taboada, E.5
-
16
-
-
0037337513
-
Gene expression profile of Campylobacter jejuni in response to growth temperature variation
-
doi:10.1128/JB.185.6.2009-2016.2003
-
Stintzi A, (2003) Gene expression profile of Campylobacter jejuni in response to growth temperature variation. J Bacteriol 185: 2009-2016. doi:10.1128/JB.185.6.2009-2016.2003. PubMed: 12618466.
-
(2003)
J Bacteriol
, vol.185
, pp. 2009-2016
-
-
Stintzi, A.1
-
17
-
-
70350431759
-
Molybdenum and tungsten in Campylobacter jejuni: their physiological role and identification of separate transporters regulated by a single ModE-like protein
-
doi:10.1111/j.1365-2958.2009.06901.x
-
Taveirne ME, Sikes ML, Olson JW, (2009) Molybdenum and tungsten in Campylobacter jejuni: their physiological role and identification of separate transporters regulated by a single ModE-like protein. Mol Microbiol 74: 758-771. doi:10.1111/j.1365-2958.2009.06901.x. PubMed: 19919002.
-
(2009)
Mol Microbiol
, vol.74
, pp. 758-771
-
-
Taveirne, M.E.1
Sikes, M.L.2
Olson, J.W.3
-
18
-
-
23344445815
-
Campylobacter jejuni gene expression in the chick cecum: evidence for adaptation to a low-oxygen environment
-
doi:10.1128/IAI.73.8.5278-5285.2005
-
Woodall CA, Jones MA, Barrow PA, Hinds J, Marsden GL, et al. (2005) Campylobacter jejuni gene expression in the chick cecum: evidence for adaptation to a low-oxygen environment. Infect Immun 73: 5278-5285. doi:10.1128/IAI.73.8.5278-5285.2005. PubMed: 16041056.
-
(2005)
Infect Immun
, vol.73
, pp. 5278-5285
-
-
Woodall, C.A.1
Jones, M.A.2
Barrow, P.A.3
Hinds, J.4
Marsden, G.L.5
-
19
-
-
33748503644
-
A phase-variable mechanism controlling the Campylobacter jejuni FlgR response regulator influences commensalism
-
doi:10.1111/j.1365-2958.2006.05336.x
-
Hendrixson DR, (2006) A phase-variable mechanism controlling the Campylobacter jejuni FlgR response regulator influences commensalism. Mol Microbiol 61: 1646-1659. doi:10.1111/j.1365-2958.2006.05336.x. PubMed: 16899076.
-
(2006)
Mol Microbiol
, vol.61
, pp. 1646-1659
-
-
Hendrixson, D.R.1
-
20
-
-
0036181422
-
A novel paralogous gene family involved in phase-variable flagella-mediated motility in Campylobacter jejuni
-
PubMed:11832511
-
Karlyshev AV, Linton D, Gregson NA, Wren BW, (2002) A novel paralogous gene family involved in phase-variable flagella-mediated motility in Campylobacter jejuni. Microbiology 148: 473-480. PubMed: 11832511.
-
(2002)
Microbiology
, vol.148
, pp. 473-480
-
-
Karlyshev, A.V.1
Linton, D.2
Gregson, N.A.3
Wren, B.W.4
-
21
-
-
0036153611
-
Phase variation of Campylobacter jejuni 81-176 lipooligosaccharide affects ganglioside mimicry and invasiveness in vitro
-
doi:10.1128/IAI.70.2.787-793.2002
-
Guerry P, Szymanski CM, Prendergast MM, Hickey TE, Ewing CP, et al. (2002) Phase variation of Campylobacter jejuni 81-176 lipooligosaccharide affects ganglioside mimicry and invasiveness in vitro. Infect Immun 70: 787-793. doi:10.1128/IAI.70.2.787-793.2002. PubMed: 11796612.
-
(2002)
Infect Immun
, vol.70
, pp. 787-793
-
-
Guerry, P.1
Szymanski, C.M.2
Prendergast, M.M.3
Hickey, T.E.4
Ewing, C.P.5
-
22
-
-
0035008707
-
A phase-variable capsule is involved in virulence of Campylobacter jejuni 81-176
-
doi:10.1046/j.1365-2958.2001.02431.x
-
Bacon DJ, Szymanski CM, Burr DH, Silver RP, Alm RA, et al. (2001) A phase-variable capsule is involved in virulence of Campylobacter jejuni 81-176. Mol Microbiol 40: 769-777. doi:10.1046/j.1365-2958.2001.02431.x. PubMed: 11359581.
-
(2001)
Mol Microbiol
, vol.40
, pp. 769-777
-
-
Bacon, D.J.1
Szymanski, C.M.2
Burr, D.H.3
Silver, R.P.4
Alm, R.A.5
-
23
-
-
0039425207
-
Stability of related human and chicken Campylobacter jejuni genotypes after passage through chick intestine studied by pulsed-field gel electrophoresis
-
PubMed:10224037
-
Hänninen ML, Hakkinen M, Rautelin H, (1999) Stability of related human and chicken Campylobacter jejuni genotypes after passage through chick intestine studied by pulsed-field gel electrophoresis. Appl Environ Microbiol 65: 2272-2275. PubMed: 10224037.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2272-2275
-
-
Hänninen, M.L.1
Hakkinen, M.2
Rautelin, H.3
-
24
-
-
0036231382
-
Generation of Campylobacter jejuni genetic diversity in vivo
-
doi:10.1046/j.1365-2958.2002.02930.x
-
de Boer P, Wagenaar JA, Achterberg RP, van Putten JP, Schouls LM, et al. (2002) Generation of Campylobacter jejuni genetic diversity in vivo. Mol Microbiol 44: 351-359. doi:10.1046/j.1365-2958.2002.02930.x. PubMed: 11972775.
-
(2002)
Mol Microbiol
, vol.44
, pp. 351-359
-
-
de Boer, P.1
Wagenaar, J.A.2
Achterberg, R.P.3
van Putten, J.P.4
Schouls, L.M.5
-
25
-
-
16244417460
-
The Campylobacter jejuni stringent response controls specific stress survival and virulence-associated phenotypes
-
doi:10.1111/j.1365-2958.2005.04525.x
-
Gaynor EC, Wells DH, MacKichan JK, Falkow S, (2005) The Campylobacter jejuni stringent response controls specific stress survival and virulence-associated phenotypes. Mol Microbiol 56: 8-27. doi:10.1111/j.1365-2958.2005.04525.x. PubMed: 15773975.
-
(2005)
Mol Microbiol
, vol.56
, pp. 8-27
-
-
Gaynor, E.C.1
Wells, D.H.2
MacKichan, J.K.3
Falkow, S.4
-
26
-
-
46049091165
-
Role of the DksA-like protein in the pathogenesis and diverse metabolic activity of Campylobacter jejuni
-
doi:10.1128/JB.00105-08
-
Yun J, Jeon B, Barton YW, Plummer P, Zhang Q, et al. (2008) Role of the DksA-like protein in the pathogenesis and diverse metabolic activity of Campylobacter jejuni. J Bacteriol 190: 4512-4520. doi:10.1128/JB.00105-08. PubMed: 18456813.
-
(2008)
J Bacteriol
, vol.190
, pp. 4512-4520
-
-
Yun, J.1
Jeon, B.2
Barton, Y.W.3
Plummer, P.4
Zhang, Q.5
-
27
-
-
15544387940
-
Use of genome-wide expression profiling and mutagenesis to study the intestinal lifestyle of Campylobacter jejuni
-
doi:10.1128/IAI.73.3.1797-1810.2005
-
Stintzi A, Marlow D, Palyada K, Naikare H, Panciera R, et al. (2005) Use of genome-wide expression profiling and mutagenesis to study the intestinal lifestyle of Campylobacter jejuni. Infect Immun 73: 1797-1810. doi:10.1128/IAI.73.3.1797-1810.2005. PubMed: 15731081.
-
(2005)
Infect Immun
, vol.73
, pp. 1797-1810
-
-
Stintzi, A.1
Marlow, D.2
Palyada, K.3
Naikare, H.4
Panciera, R.5
-
28
-
-
84872141736
-
Transcriptional response of mucoid Pseudomonas aeruginosa to human respiratory mucus
-
PubMed:23143799
-
Cattoir V, Narasimhan G, Skurnik D, Aschard H, Roux D, et al. (2013) Transcriptional response of mucoid Pseudomonas aeruginosa to human respiratory mucus. mBio 3: e00410-00412. PubMed: 23143799.
-
(2013)
MBio
, vol.3
-
-
Cattoir, V.1
Narasimhan, G.2
Skurnik, D.3
Aschard, H.4
Roux, D.5
-
29
-
-
80053460594
-
Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome
-
doi:10.1099/mic.0.050278-0
-
Chaudhuri RR, Yu L, Kanji A, Perkins TT, Gardner PP, et al. (2011) Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome. Microbiology 157: 2922-2932. doi:10.1099/mic.0.050278-0. PubMed: 21816880.
-
(2011)
Microbiology
, vol.157
, pp. 2922-2932
-
-
Chaudhuri, R.R.1
Yu, L.2
Kanji, A.3
Perkins, T.T.4
Gardner, P.P.5
-
30
-
-
84878482772
-
High-Resolution Transcriptome Maps Reveal Strain- Specific Regulatory Features of Multiple Campylobacter jejuni Isolates
-
Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, et al. (2013) High-Resolution Transcriptome Maps Reveal Strain- Specific Regulatory Features of Multiple Campylobacter jejuni Isolates. PLOS Genet 9.
-
(2013)
PLOS Genet
, vol.9
-
-
Dugar, G.1
Herbig, A.2
Förstner, K.U.3
Heidrich, N.4
Reinhardt, R.5
-
31
-
-
80051915419
-
RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression
-
doi:10.1016/j.chom.2011.07.007
-
Mandlik A, Livny J, Robins WP, Ritchie JM, Mekalanos JJ, et al. (2011) RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. Cell Host Microbe 10: 165-174. doi:10.1016/j.chom.2011.07.007. PubMed: 21843873.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 165-174
-
-
Mandlik, A.1
Livny, J.2
Robins, W.P.3
Ritchie, J.M.4
Mekalanos, J.J.5
-
32
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
doi:10.1038/nature08756
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250-255. doi:10.1038/nature08756. PubMed: 20164839.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
-
33
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
doi:10.1038/nrg2484
-
Wang Z, Gerstein M, Snyder M, (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63. doi:10.1038/nrg2484. PubMed: 19015660.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
34
-
-
0029889596
-
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene
-
PubMed:8682778
-
Brown L, Elliott T, (1996) Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene. J Bacteriol 178: 3763-3770. PubMed: 8682778.
-
(1996)
J Bacteriol
, vol.178
, pp. 3763-3770
-
-
Brown, L.1
Elliott, T.2
-
35
-
-
0034652188
-
Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I
-
doi:10.1073/pnas.040549897
-
Hajnsdorf E, Régnier P, (2000) Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I. Proc Natl Acad Sci U S A 97: 1501-1505. doi:10.1073/pnas.040549897. PubMed: 10677490.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 1501-1505
-
-
Hajnsdorf, E.1
Régnier, P.2
-
36
-
-
0029897937
-
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli
-
doi:10.1101/gad.10.9.1143
-
Muffler A, Fischer D, Hengge-Aronis R, (1996) The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli. Genes Dev 10: 1143-1151. doi:10.1101/gad.10.9.1143. PubMed: 8654929.
-
(1996)
Genes Dev
, vol.10
, pp. 1143-1151
-
-
Muffler, A.1
Fischer, D.2
Hengge-Aronis, R.3
-
37
-
-
0031028155
-
The RNA-binding protein HF-I plays a global regulatory role which is largely, but not exclusively, due to its role in expression of the sigmaS subunit of RNA polymerase in Escherichia coli
-
PubMed:8982015
-
Muffler A, Traulsen DD, Fischer D, Lange R, Hengge-Aronis R, (1997) The RNA-binding protein HF-I plays a global regulatory role which is largely, but not exclusively, due to its role in expression of the sigmaS subunit of RNA polymerase in Escherichia coli. J Bacteriol 179: 297-300. PubMed: 8982015.
-
(1997)
J Bacteriol
, vol.179
, pp. 297-300
-
-
Muffler, A.1
Traulsen, D.D.2
Fischer, D.3
Lange, R.4
Hengge-Aronis, R.5
-
38
-
-
0035048862
-
Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli
-
doi:10.1046/j.1365-2958.2001.02380.x
-
Wei BL, Brun-Zinkernagel AM, Simecka JW, Prüss BM, Babitzke P, et al. (2001) Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli. Mol Microbiol 40: 245-256. doi:10.1046/j.1365-2958.2001.02380.x. PubMed: 11298291.
-
(2001)
Mol Microbiol
, vol.40
, pp. 245-256
-
-
Wei, B.L.1
Brun-Zinkernagel, A.M.2
Simecka, J.W.3
Prüss, B.M.4
Babitzke, P.5
-
39
-
-
0348225097
-
Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori
-
PubMed:14651608
-
Barnard FM, Loughlin MF, Fainberg HP, Messenger MP, Ussery DW, et al. (2004) Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori. Mol Microbiol 51: 15-32. PubMed: 14651608.
-
(2004)
Mol Microbiol
, vol.51
, pp. 15-32
-
-
Barnard, F.M.1
Loughlin, M.F.2
Fainberg, H.P.3
Messenger, M.P.4
Ussery, D.W.5
-
40
-
-
0027171032
-
Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties
-
PUbMed:8393005
-
Romeo T, Gong M, Liu MY, Brun-Zinkernagel AM, (1993) Identification and molecular characterization of csrA, a pleiotropic gene from Escherichia coli that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties. J Bacteriol 175: 4744-4755. PubMed: 8393005.
-
(1993)
J Bacteriol
, vol.175
, pp. 4744-4755
-
-
Romeo, T.1
Gong, M.2
Liu, M.Y.3
Brun-Zinkernagel, A.M.4
-
41
-
-
42549091148
-
Campylobacter jejuni CsrA mediates oxidative stress responses, biofilm formation, and host cell invasion
-
doi:10.1128/JB.01928-07
-
Fields JA, Thompson SA, (2008) Campylobacter jejuni CsrA mediates oxidative stress responses, biofilm formation, and host cell invasion. J Bacteriol 190: 3411-3416. doi:10.1128/JB.01928-07. PubMed: 18310331.
-
(2008)
J Bacteriol
, vol.190
, pp. 3411-3416
-
-
Fields, J.A.1
Thompson, S.A.2
-
42
-
-
78650162458
-
A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori
-
doi:10.1128/JB.00800-10
-
Wen Y, Feng J, Scott DR, Marcus EA, Sachs G, (2011) A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori. J Bacteriol 193: 40-51. doi:10.1128/JB.00800-10. PubMed: 20971914.
-
(2011)
J Bacteriol
, vol.193
, pp. 40-51
-
-
Wen, Y.1
Feng, J.2
Scott, D.R.3
Marcus, E.A.4
Sachs, G.5
-
43
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
doi:10.1128/AEM.01541-09
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541. doi:10.1128/AEM.01541-09. PubMed: 19801464.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
44
-
-
51449108782
-
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome
-
doi:10.1371/journal.pone.0002945
-
Qu A, Brulc JM, Wilson MK, Law BF, Theoret JR,et al (2008) Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome. PLOS ONE 3: e2945. doi:10.1371/journal.pone.0002945. PubMed: 18698407.
-
(2008)
PLOS ONE
, vol.3
-
-
Qu, A.1
Brulc, J.M.2
Wilson, M.K.3
Law, B.F.4
-
45
-
-
77958471357
-
Differential expression analysis for sequence count data
-
doi:10.1186/gb-2010-11-10-r106
-
Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106. doi:10.1186/gb-2010-11-10-r106. PubMed: 20979621.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
46
-
-
0022511864
-
Influence of iron on growth, morphology, outer membrane protein composition, and synthesis of siderophores in Campylobacter jejuni
-
PubMed:2944843
-
Field LH, Headley VL, Payne SM, Berry LJ, (1986) Influence of iron on growth, morphology, outer membrane protein composition, and synthesis of siderophores in Campylobacter jejuni. Infect Immun 54: 126-132. PubMed: 2944843.
-
(1986)
Infect Immun
, vol.54
, pp. 126-132
-
-
Field, L.H.1
Headley, V.L.2
Payne, S.M.3
Berry, L.J.4
-
47
-
-
13444312215
-
Campylobacter jejuni gene expression in response to iron limitation and the role of Fur
-
doi:10.1099/mic.0.27412-0
-
Holmes K, Mulholland F, Pearson BM, Pin C, McNicholl-Kennedy J, et al. (2005) Campylobacter jejuni gene expression in response to iron limitation and the role of Fur. Microbiology 151: 243-257. doi:10.1099/mic.0.27412-0. PubMed: 15632442.
-
(2005)
Microbiology
, vol.151
, pp. 243-257
-
-
Holmes, K.1
Mulholland, F.2
Pearson, B.M.3
Pin, C.4
McNicholl-Kennedy, J.5
-
48
-
-
3042855363
-
Iron acquisition and regulation in Campylobacter jejuni
-
doi:10.1128/JB.186.14.4714-4729.2004
-
Palyada K, Threadgill D, Stintzi A, (2004) Iron acquisition and regulation in Campylobacter jejuni. J Bacteriol 186: 4714-4729. doi:10.1128/JB.186.14.4714-4729.2004. PubMed: 15231804.
-
(2004)
J Bacteriol
, vol.186
, pp. 4714-4729
-
-
Palyada, K.1
Threadgill, D.2
Stintzi, A.3
-
49
-
-
77956533074
-
Identification and characterization of a new ferric enterobactin receptor, CfrB, in Campylobacter
-
doi:10.1128/JB.00478-10
-
Xu F, Zeng X, Haigh RD, Ketley JM, Lin J, (2010) Identification and characterization of a new ferric enterobactin receptor, CfrB, in Campylobacter. J Bacteriol 192: 4425-4435. doi:10.1128/JB.00478-10. PubMed: 20585060.
-
(2010)
J Bacteriol
, vol.192
, pp. 4425-4435
-
-
Xu, F.1
Zeng, X.2
Haigh, R.D.3
Ketley, J.M.4
Lin, J.5
-
50
-
-
0031690670
-
Iron-responsive gene regulation in a Campylobacter jejuni fur mutant
-
PubMed:9765558
-
van Vliet AH, Wooldridge KG, Ketley JM, (1998) Iron-responsive gene regulation in a Campylobacter jejuni fur mutant. J Bacteriol 180: 5291-5298. PubMed: 9765558.
-
(1998)
J Bacteriol
, vol.180
, pp. 5291-5298
-
-
van Vliet, A.H.1
Wooldridge, K.G.2
Ketley, J.M.3
-
51
-
-
0030722964
-
Phosphate transport in prokaryotes: molecules, mediators and mechanisms
-
doi:10.1023/A:1000530927928
-
van Veen HW, (1997) Phosphate transport in prokaryotes: molecules, mediators and mechanisms. Antonie Van Leeuwenhoek 72: 299-315. doi:10.1023/A:1000530927928. PubMed: 9442271.
-
(1997)
Antonie Van Leeuwenhoek
, vol.72
, pp. 299-315
-
-
van Veen, H.W.1
-
52
-
-
33748663070
-
The Campylobacter jejuni PhosS/PhosR operon represents a non-classical phosphate-sensitive two-component system
-
doi:10.1111/j.1365-2958.2006.05372.x
-
Wösten MM, Parker CT, van Mourik A, Guilhabert MR, van Dijk L, et al. (2006) The Campylobacter jejuni PhosS/PhosR operon represents a non-classical phosphate-sensitive two-component system. Mol Microbiol 62: 278-291. doi:10.1111/j.1365-2958.2006.05372.x. PubMed: 16956379.
-
(2006)
Mol Microbiol
, vol.62
, pp. 278-291
-
-
Wösten, M.M.1
Parker, C.T.2
van Mourik, A.3
Guilhabert, M.R.4
van Dijk, L.5
-
53
-
-
70549097051
-
Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni
-
doi:10.1186/1471-2164-10-481
-
Palyada K, Sun YQ, Flint A, Butcher J, Naikare H, et al. (2009) Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni. BMC Genomics 10: 481. doi:10.1186/1471-2164-10-481. PubMed: 19835633.
-
(2009)
BMC Genomics
, vol.10
, pp. 481
-
-
Palyada, K.1
Sun, Y.Q.2
Flint, A.3
Butcher, J.4
Naikare, H.5
-
54
-
-
0033788137
-
Role of catalase in Campylobacter jejuni intracellular survival
-
doi:10.1128/IAI.68.11.6337-6345.2000
-
Day WA Jr., Sajecki JL, Pitts TM, Joens LA, (2000) Role of catalase in Campylobacter jejuni intracellular survival. Infect Immun 68: 6337-6345. doi:10.1128/IAI.68.11.6337-6345.2000. PubMed: 11035743.
-
(2000)
Infect Immun
, vol.68
, pp. 6337-6345
-
-
Day Jr., W.A.1
Sajecki, J.L.2
Pitts, T.M.3
Joens, L.A.4
-
55
-
-
0029045134
-
Molecular characterization of katA from Campylobacter jejuni and generation of a catalase-deficient mutant of Campylobacter coli by interspecific allelic exchange
-
doi:10.1099/13500872-141-6-1369
-
Grant KA, Park SF, (1995) Molecular characterization of katA from Campylobacter jejuni and generation of a catalase-deficient mutant of Campylobacter coli by interspecific allelic exchange. Microbiology 141(6):: 1369-1376. doi:10.1099/13500872-141-6-1369.
-
(1995)
Microbiology
, vol.141
, pp. 1369-1376
-
-
Grant, K.A.1
Park, S.F.2
-
56
-
-
3843125241
-
Role of an inducible single-domain hemoglobin in mediating resistance to nitric oxide and nitrosative stress in Campylobacter jejuni and Campylobacter coli
-
doi:10.1128/JB.186.16.5332-5341.2004
-
Elvers KT, Wu G, Gilberthorpe NJ, Poole RK, Park SF, (2004) Role of an inducible single-domain hemoglobin in mediating resistance to nitric oxide and nitrosative stress in Campylobacter jejuni and Campylobacter coli. J Bacteriol 186: 5332-5341. doi:10.1128/JB.186.16.5332-5341.2004. PubMed: 15292134.
-
(2004)
J Bacteriol
, vol.186
, pp. 5332-5341
-
-
Elvers, K.T.1
Wu, G.2
Gilberthorpe, N.J.3
Poole, R.K.4
Park, S.F.5
-
57
-
-
51349134479
-
Campylobacter colonization of the chicken induces a proinflammatory response in mucosal tissues
-
doi:10.1111/j.1574-695X.2008.00458.x
-
Smith CK, Abuoun M, Cawthraw SA, Humphrey TJ, Rothwell L, et al. (2008) Campylobacter colonization of the chicken induces a proinflammatory response in mucosal tissues. FEMS Immunol Med Microbiol 54: 114-121. doi:10.1111/j.1574-695X.2008.00458.x. PubMed: 18647351.
-
(2008)
FEMS Immunol Med Microbiol
, vol.54
, pp. 114-121
-
-
Smith, C.K.1
Abuoun, M.2
Cawthraw, S.A.3
Humphrey, T.J.4
Rothwell, L.5
-
58
-
-
16244396072
-
Campylobacter jejuni-induced cytokine responses in avian cells
-
doi:10.1128/IAI.73.4.2094-2100.2005
-
Smith CK, Kaiser P, Rothwell L, Humphrey T, Barrow PA, et al. (2005) Campylobacter jejuni-induced cytokine responses in avian cells. Infect Immun 73: 2094-2100. doi:10.1128/IAI.73.4.2094-2100.2005. PubMed: 15784550.
-
(2005)
Infect Immun
, vol.73
, pp. 2094-2100
-
-
Smith, C.K.1
Kaiser, P.2
Rothwell, L.3
Humphrey, T.4
Barrow, P.A.5
-
59
-
-
47049112745
-
Colonization strategy of Campylobacter jejuni results in persistent infection of the chicken gut
-
doi:10.1016/j.vetmic.2007.11.027
-
Van Deun K, Pasmans F, Ducatelle R, Flahou B, Vissenberg K, et al. (2008) Colonization strategy of Campylobacter jejuni results in persistent infection of the chicken gut. Vet Microbiol 130: 285-297. doi:10.1016/j.vetmic.2007.11.027. PubMed: 18187272.
-
(2008)
Vet Microbiol
, vol.130
, pp. 285-297
-
-
Van Deun, K.1
Pasmans, F.2
Ducatelle, R.3
Flahou, B.4
Vissenberg, K.5
-
60
-
-
84864742477
-
Avian resistance to Campylobacter jejuni colonization is associated with an intestinal immunogene expression signature identified by mRNA sequencing
-
doi:10.1371/journal.pone.0040409
-
Connell S, Meade KG, Allan B, Lloyd AT, Kenny E, et al. (2012) Avian resistance to Campylobacter jejuni colonization is associated with an intestinal immunogene expression signature identified by mRNA sequencing. PLOS ONE 7: e40409. doi:10.1371/journal.pone.0040409. PubMed: 22870198.
-
(2012)
PLOS ONE
, vol.7
-
-
Connell, S.1
Meade, K.G.2
Allan, B.3
Lloyd, A.T.4
Kenny, E.5
-
61
-
-
84872045564
-
Mucosal reactive oxygen species decrease virulence by disrupting Campylobacter jejuni phosphotyrosine signaling
-
doi:10.1016/j.chom.2012.05.018
-
Corcionivoschi N, Alvarez LA, Sharp TH, Strengert M, Alemka A, et al. (2012) Mucosal reactive oxygen species decrease virulence by disrupting Campylobacter jejuni phosphotyrosine signaling. Cell Host Microbe 12: 47-59. doi:10.1016/j.chom.2012.05.018. PubMed: 22817987.
-
(2012)
Cell Host Microbe
, vol.12
, pp. 47-59
-
-
Corcionivoschi, N.1
Alvarez, L.A.2
Sharp, T.H.3
Strengert, M.4
Alemka, A.5
-
62
-
-
77349087084
-
Activation of human and chicken toll-like receptors by Campylobacter spp
-
doi:10.1128/IAI.00897-09
-
de Zoete MR, Keestra AM, Roszczenko P, van Putten JP, (2010) Activation of human and chicken toll-like receptors by Campylobacter spp. Infect Immun 78: 1229-1238. doi:10.1128/IAI.00897-09. PubMed: 20038539.
-
(2010)
Infect Immun
, vol.78
, pp. 1229-1238
-
-
de Zoete, M.R.1
Keestra, A.M.2
Roszczenko, P.3
van Putten, J.P.4
-
63
-
-
6444241113
-
Nucleotide sequences and comparison of two large conjugative plasmids from different Campylobacter species
-
doi:10.1099/mic.0.27112-0
-
Batchelor RA, Pearson BM, Friis LM, Guerry P, Wells JM, (2004) Nucleotide sequences and comparison of two large conjugative plasmids from different Campylobacter species. Microbiology 150: 3507-3517. doi:10.1099/mic.0.27112-0. PubMed: 15470128.
-
(2004)
Microbiology
, vol.150
, pp. 3507-3517
-
-
Batchelor, R.A.1
Pearson, B.M.2
Friis, L.M.3
Guerry, P.4
Wells, J.M.5
-
64
-
-
0028008785
-
Development and characterization of recA mutants of Campylobacter jejuni for inclusion in attenuated vaccines
-
PubMed:8300203
-
Guerry P, Pope PM, Burr DH, Leifer J, Joseph SW, et al. (1994) Development and characterization of recA mutants of Campylobacter jejuni for inclusion in attenuated vaccines. Infect Immun 62: 426-432. PubMed: 8300203.
-
(1994)
Infect Immun
, vol.62
, pp. 426-432
-
-
Guerry, P.1
Pope, P.M.2
Burr, D.H.3
Leifer, J.4
Joseph, S.W.5
-
65
-
-
0033942331
-
Involvement of a plasmid in virulence of Campylobacter jejuni 81-176
-
doi:10.1128/IAI.68.8.4384-4390.2000
-
Bacon DJ, Alm RA, Burr DH, Hu L, Kopecko DJ, et al. (2000) Involvement of a plasmid in virulence of Campylobacter jejuni 81-176. Infect Immun 68: 4384-4390. doi:10.1128/IAI.68.8.4384-4390.2000. PubMed: 10899834.
-
(2000)
Infect Immun
, vol.68
, pp. 4384-4390
-
-
Bacon, D.J.1
Alm, R.A.2
Burr, D.H.3
Hu, L.4
Kopecko, D.J.5
-
66
-
-
34648841073
-
The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case
-
doi:10.1186/1471-2148-7-S1-S4
-
Fani R, Brilli M, Fondi M, Lió P, (2007) The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case. BMC Evol Biol 7 (Suppl 2):: S4. doi:10.1186/1471-2148-7-S1-S4. PubMed: 17767732.
-
(2007)
BMC Evol Biol
, vol.7
, Issue.SUPPL. 2
-
-
Fani, R.1
Brilli, M.2
Fondi, M.3
Lió, P.4
-
67
-
-
33745869039
-
Functional characterization of the flagellar glycosylation locus in Campylobacter jejuni 81-176 using a focused metabolomics approach
-
doi:10.1074/jbc.M603777200
-
McNally DJ, Hui JP, Aubry AJ, Mui KK, Guerry P, et al. (2006) Functional characterization of the flagellar glycosylation locus in Campylobacter jejuni 81-176 using a focused metabolomics approach. J Biol Chem 281: 18489-18498. doi:10.1074/jbc.M603777200. PubMed: 16684771.
-
(2006)
J Biol Chem
, vol.281
, pp. 18489-18498
-
-
McNally, D.J.1
Hui, J.P.2
Aubry, A.J.3
Mui, K.K.4
Guerry, P.5
-
68
-
-
0025994829
-
Identification, purification, and characterization of major antigenic proteins of Campylobacter jejuni
-
Pei ZH, Ellison3rd, Blaser MJ (1991) Identification, purification, and characterization of major antigenic proteins of Campylobacter jejuni. The Journal of biological chemistry 266: 16363-16369.
-
(1991)
The Journal of biological chemistry
, vol.266
, pp. 16363-16369
-
-
Pei, Z.H.1
Ellison 3rd2
Blaser, M.J.3
-
69
-
-
0036173114
-
Identification of N-acetylgalactosamine-containing glycoproteins PEB3 and CgpA in Campylobacter jejuni
-
doi:10.1046/j.1365-2958.2002.02762.x
-
Linton D, Allan E, Karlyshev AV, Cronshaw AD, Wren BW, (2002) Identification of N-acetylgalactosamine-containing glycoproteins PEB3 and CgpA in Campylobacter jejuni. Mol Microbiol 43: 497-508. doi:10.1046/j.1365-2958.2002.02762.x. PubMed: 11985725.
-
(2002)
Mol Microbiol
, vol.43
, pp. 497-508
-
-
Linton, D.1
Allan, E.2
Karlyshev, A.V.3
Cronshaw, A.D.4
Wren, B.W.5
-
70
-
-
0036066808
-
Growth of Campylobacter jejuni supported by respiration of fumarate, nitrate, nitrite, trimethylamine-N-oxide, or dimethyl sulfoxide requires oxygen
-
doi:10.1128/JB.184.15.4187-4196.2002
-
Sellars MJ, Hall SJ, Kelly DJ, (2002) Growth of Campylobacter jejuni supported by respiration of fumarate, nitrate, nitrite, trimethylamine-N-oxide, or dimethyl sulfoxide requires oxygen. J Bacteriol 184: 4187-4196. doi:10.1128/JB.184.15.4187-4196.2002. PubMed: 12107136.
-
(2002)
J Bacteriol
, vol.184
, pp. 4187-4196
-
-
Sellars, M.J.1
Hall, S.J.2
Kelly, D.J.3
-
71
-
-
38649086396
-
The Campylobacter jejuni NADH:ubiquinone oxidoreductase (complex I) utilizes flavodoxin rather than NADH
-
doi:10.1128/JB.01647-07
-
Weerakoon DR, Olson JW, (2008) The Campylobacter jejuni NADH:ubiquinone oxidoreductase (complex I) utilizes flavodoxin rather than NADH. J Bacteriol 190: 915-925. doi:10.1128/JB.01647-07. PubMed: 18065531.
-
(2008)
J Bacteriol
, vol.190
, pp. 915-925
-
-
Weerakoon, D.R.1
Olson, J.W.2
-
72
-
-
33947366478
-
Oxygen reactivity of both respiratory oxidases in Campylobacter jejuni: the cydAB genes encode a cyanide-resistant, low-affinity oxidase that is not of the cytochrome bd type
-
doi:10.1128/JB.00897-06
-
Jackson RJ, Elvers KT, Lee LJ, Gidley MD, Wainwright LM, et al. (2007) Oxygen reactivity of both respiratory oxidases in Campylobacter jejuni: the cydAB genes encode a cyanide-resistant, low-affinity oxidase that is not of the cytochrome bd type. J Bacteriol 189: 1604-1615. doi:10.1128/JB.00897-06. PubMed: 17172349.
-
(2007)
J Bacteriol
, vol.189
, pp. 1604-1615
-
-
Jackson, R.J.1
Elvers, K.T.2
Lee, L.J.3
Gidley, M.D.4
Wainwright, L.M.5
-
73
-
-
13444259982
-
A sulphite respiration system in the chemoheterotrophic human pathogen Campylobacter jejuni
-
doi:10.1099/mic.0.27573-0
-
Myers JD, Kelly DJ, (2005) A sulphite respiration system in the chemoheterotrophic human pathogen Campylobacter jejuni. Microbiology 151: 233-242. doi:10.1099/mic.0.27573-0. PubMed: 15632441.
-
(2005)
Microbiology
, vol.151
, pp. 233-242
-
-
Myers, J.D.1
Kelly, D.J.2
-
74
-
-
0037337513
-
Gene expression profile of Campylobacter jejuni in response to growth temperature variation
-
doi:10.1128/JB.185.6.2009-2016.2003
-
Stintzi A, (2003) Gene expression profile of Campylobacter jejuni in response to growth temperature variation. J Bacteriol 185: 2009-2016. doi:10.1128/JB.185.6.2009-2016.2003. PubMed: 12618466.
-
(2003)
J Bacteriol
, vol.185
, pp. 2009-2016
-
-
Stintzi, A.1
-
75
-
-
58149191274
-
Rfam: updates to the RNA families database
-
doi:10.1093/nar/gkp725
-
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, et al. (2009) Rfam: updates to the RNA families database. Nucleic Acids Res 37: D136-D140. doi:10.1093/nar/gkp725. PubMed: 18953034.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
-
76
-
-
34347230891
-
Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence
-
doi:10.1186/1471-2164-8-162
-
Gundogdu O, Bentley SD, Holden MT, Parkhill J, Dorrell N, et al. (2007) Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence. BMC Genomics 8: 162. doi:10.1186/1471-2164-8-162. PubMed: 17565669.
-
(2007)
BMC Genomics
, vol.8
, pp. 162
-
-
Gundogdu, O.1
Bentley, S.D.2
Holden, M.T.3
Parkhill, J.4
Dorrell, N.5
-
77
-
-
84860715141
-
Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
-
PubMed:22617957
-
Wurtzel O, Sesto N, Mellin JR, Karunker I, Edelheit S, et al. (2012) Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol Syst Biol 8: 583. PubMed: 22617957.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 583
-
-
Wurtzel, O.1
Sesto, N.2
Mellin, J.R.3
Karunker, I.4
Edelheit, S.5
-
78
-
-
48449101958
-
TargetRNA: a tool for predicting targets of small RNA action in bacteria
-
doi:10.1093/nar/gkn264
-
Tjaden B, (2008) TargetRNA: a tool for predicting targets of small RNA action in bacteria. Nucleic Acids Res 36: W109-W113. doi:10.1093/nar/gkn264. PubMed: 18477632.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Tjaden, B.1
-
79
-
-
57149111586
-
Small RNA binding to 5' mRNA coding region inhibits translational initiation
-
doi:10.1016/j.molcel.2008.10.027
-
Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J, (2008) Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell 32: 827-837. doi:10.1016/j.molcel.2008.10.027. PubMed: 19111662.
-
(2008)
Mol Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
80
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
doi:10.1101/gad.1127103
-
Massé E, Escorcia FE, Gottesman S, (2003) Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev 17: 2374-2383. doi:10.1101/gad.1127103. PubMed: 12975324.
-
(2003)
Genes Dev
, vol.17
, pp. 2374-2383
-
-
Massé, E.1
Escorcia, F.E.2
Gottesman, S.3
-
81
-
-
24944507588
-
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
-
doi:10.1101/gad.1330405
-
Morita T, Maki K, Aiba H, (2005) RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev 19: 2176-2186. doi:10.1101/gad.1330405. PubMed: 16166379.
-
(2005)
Genes Dev
, vol.19
, pp. 2176-2186
-
-
Morita, T.1
Maki, K.2
Aiba, H.3
-
82
-
-
34249777280
-
The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
-
doi:10.1111/j.1365-2958.2007.05733.x
-
Prévost K, Salvail H, Desnoyers G, Jacques JF, Phaneuf E, et al. (2007) The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Mol Microbiol 64: 1260-1273. doi:10.1111/j.1365-2958.2007.05733.x. PubMed: 17542919.
-
(2007)
Mol Microbiol
, vol.64
, pp. 1260-1273
-
-
Prévost, K.1
Salvail, H.2
Desnoyers, G.3
Jacques, J.F.4
Phaneuf, E.5
-
83
-
-
41749124288
-
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation
-
doi:10.1371/journal.pbio.0060064
-
Urban JH, Vogel J, (2008) Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. PLOS Biol 6: e64. doi:10.1371/journal.pbio.0060064. PubMed: 18351803.
-
(2008)
PLOS Biol
, vol.6
-
-
Urban, J.H.1
Vogel, J.2
-
84
-
-
60149089144
-
Regulatory RNAs in bacteria
-
doi:10.1016/j.cell.2009.01.043
-
Waters LS, Storz G, (2009) Regulatory RNAs in bacteria. Cell 136: 615-628. doi:10.1016/j.cell.2009.01.043. PubMed: 19239884.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
85
-
-
52449093583
-
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs
-
doi:10.1371/journal.pone.0003197
-
Livny J, Teonadi H, Livny M, Waldor MK, (2008) High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLOS ONE 3: e3197. doi:10.1371/journal.pone.0003197. PubMed: 18787707.
-
(2008)
PLOS ONE
, vol.3
-
-
Livny, J.1
Teonadi, H.2
Livny, M.3
Waldor, M.K.4
-
86
-
-
84855867638
-
GenomeView: a next-generation genome browser
-
doi:10.1093/nar/gkr995
-
Abeel T, Van Parys T, Saeys Y, Galagan J, Van de Peer Y, (2012) GenomeView: a next-generation genome browser. Nucleic Acids Res 40: e12. doi:10.1093/nar/gkr995. PubMed: 22102585.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Abeel, T.1
Van Parys, T.2
Saeys, Y.3
Galagan, J.4
Van de Peer, Y.5
-
87
-
-
0035050923
-
Transposon mutagenesis of Campylobacter jejuni identifies a bipartite energy taxis system required for motility
-
doi:10.1046/j.1365-2958.2001.02376.x
-
Hendrixson DR, Akerley BJ, DiRita VJ, (2001) Transposon mutagenesis of Campylobacter jejuni identifies a bipartite energy taxis system required for motility. Mol Microbiol 40: 214-224. doi:10.1046/j.1365-2958.2001.02376.x. PubMed: 11298288.
-
(2001)
Mol Microbiol
, vol.40
, pp. 214-224
-
-
Hendrixson, D.R.1
Akerley, B.J.2
DiRita, V.J.3
-
88
-
-
79551513941
-
Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host
-
doi:10.1371/journal.pone.0016399
-
Jerome JP, Bell JA, Plovanich-Jones AE, Barrick JE, Brown CT, et al. (2011) Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host. PLOS ONE 6: e16399. doi:10.1371/journal.pone.0016399. PubMed: 21283682.
-
(2011)
PLOS ONE
, vol.6
-
-
Jerome, J.P.1
Bell, J.A.2
Plovanich-Jones, A.E.3
Barrick, J.E.4
Brown, C.T.5
-
89
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
doi:10.1038/nmeth.1491
-
Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, et al. (2010) Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat Methods 7: 709-715. doi:10.1038/nmeth.1491. PubMed: 20711195.
-
(2010)
Nat Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
-
90
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
doi:10.1006/meth.2001.1262
-
Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408. doi:10.1006/meth.2001.1262. PubMed: 11846609.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
91
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
doi:10.1093/bioinformatics/btp324
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760. doi:10.1093/bioinformatics/btp324. PubMed: 19451168.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
92
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
doi:10.1093/nar/gkp353
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145. doi:10.1093/nar/gkp353. PubMed: 19004872.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
93
-
-
27744480824
-
A similarity measure based on species proportions
-
doi:10.1080/STA-200066418
-
Yue JC, Clayton MK, (2005) A similarity measure based on species proportions. Commun Stat Theor Methods 34: 2123-2131. doi:10.1080/STA-200066418.
-
(2005)
Commun Stat Theor Methods
, vol.34
, pp. 2123-2131
-
-
Yue, J.C.1
Clayton, M.K.2
-
94
-
-
84863304598
-
-
R Development Core Team, Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team (2010) R: A language and environment for statisitcal programing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2010)
R: A Language and Environment for Statisitcal Programing
-
-
-
95
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
doi:10.1073/pnas.95.25.14863
-
Eisen MB, Spellman PT, Brown PO, Botstein D, (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95: 14863-14868. doi:10.1073/pnas.95.25.14863. PubMed: 9843981.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
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