메뉴 건너뛰기




Volumn 30, Issue 4, 2013, Pages 1906-1912

Exome capture sequencing reveals new insights into hepatitis B virus-induced hepatocellular carcinoma at the early stage of tumorigenesis

Author keywords

Exome sequencing; Hepatitis B virus; Hepatocellular carcinoma; Somatic mutation

Indexed keywords

ADULT; ARTICLE; CNTN2 GENE; CONTROLLED STUDY; EXOME CAPTURE SEQUENCING; FLNA GENE; GENE; GENE MUTATION; GENE SEQUENCE; HEPATITIS B VIRUS; HUMAN; HUMAN TISSUE; LIVER CARCINOGENESIS; LIVER CELL CARCINOMA; MAJOR CLINICAL STUDY; MALE; PARP4 GENE; PRIORITY JOURNAL; SOMATIC MUTATION; VIRUS CARCINOGENESIS; WHOLE GENOME SEQUENCING; ZNF717 GENE;

EID: 84882628975     PISSN: 1021335X     EISSN: 17912431     Source Type: Journal    
DOI: 10.3892/or.2013.2652     Document Type: Article
Times cited : (19)

References (29)
  • 1
    • 34250020201 scopus 로고    scopus 로고
    • Hepatocellular carcinoma: Epidemiology and molecular carcinogenesis
    • El-Serag HB and Rudolph KL: Hepatocellular carcinoma: epidemiology and molecular carcinogenesis. Gastroenterology 132: 2557-2576, 2007.
    • (2007) Gastroenterology , vol.132 , pp. 2557-2576
    • El-Serag, H.B.1    Rudolph, K.L.2
  • 3
    • 33748114343 scopus 로고    scopus 로고
    • The contributions of hepatitis B virus and hepatitis C virus infections to cirrhosis and primary liver cancer worldwide
    • Perz JF, Armstrong GL, Farrington LA, Hutin YJ and Bell BP: The contributions of hepatitis B virus and hepatitis C virus infections to cirrhosis and primary liver cancer worldwide. J Hepatol 45: 529-538, 2006.
    • (2006) J Hepatol , vol.45 , pp. 529-538
    • Perz, J.F.1    Armstrong, G.L.2    Farrington, L.A.3    Hutin, Y.J.4    Bell, B.P.5
  • 4
    • 67650938576 scopus 로고    scopus 로고
    • Hepatocellular carcinoma - Epidemiological trends and risk factors
    • Schütte K, Bornschein J and Malfertheiner P: Hepatocellular carcinoma - epidemiological trends and risk factors. Dig Dis 27: 80-92, 2009.
    • (2009) Dig Dis , vol.27 , pp. 80-92
    • Schütte, K.1    Bornschein, J.2    Malfertheiner, P.3
  • 5
    • 79953158399 scopus 로고    scopus 로고
    • Exploring the genomes of cancer cells: Progress and promise
    • Stratton MR: Exploring the genomes of cancer cells: progress and promise. Science 331: 1553-1558, 2011.
    • (2011) Science , vol.331 , pp. 1553-1558
    • Stratton, M.R.1
  • 7
    • 77956838065 scopus 로고    scopus 로고
    • Advances in understanding cancer genomes through second-generation sequencing
    • Meyerson M, Gabriel S and Getz G: Advances in understanding cancer genomes through second-generation sequencing. Nat Rev Genet 11: 685-696, 2010.
    • (2010) Nat Rev Genet , vol.11 , pp. 685-696
    • Meyerson, M.1    Gabriel, S.2    Getz, G.3
  • 8
    • 84862999344 scopus 로고    scopus 로고
    • Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma
    • Sung WK, Zheng H, Li S, et al: Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet 44: 765-769, 2012.
    • (2012) Nat Genet , vol.44 , pp. 765-769
    • Sung, W.K.1    Zheng, H.2    Li, S.3
  • 9
    • 80052271807 scopus 로고    scopus 로고
    • Inactivating mutations of the chromatin remodeling gene ARID2 in hepatocellular carcinoma
    • Li M, Zhao H, Zhang X, et al: Inactivating mutations of the chromatin remodeling gene ARID2 in hepatocellular carcinoma. Nat Genet 43: 828-829, 2011.
    • (2011) Nat Genet , vol.43 , pp. 828-829
    • Li, M.1    Zhao, H.2    Zhang, X.3
  • 10
    • 84983720414 scopus 로고    scopus 로고
    • Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data
    • Tao Y, Ruan J, Yeh SH, et al: Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proc Natl Acad Sci USA 108: 12042-12047, 2011.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 12042-12047
    • Tao, Y.1    Ruan, J.2    Yeh, S.H.3
  • 11
    • 85027927831 scopus 로고    scopus 로고
    • High-resolution characterization of a hepatocellular carcinoma genome
    • Totoki Y, Tatsuno K, Yamamoto S, et al: High-resolution characterization of a hepatocellular carcinoma genome. Nat Genet 43: 464-469, 2011.
    • (2011) Nat Genet , vol.43 , pp. 464-469
    • Totoki, Y.1    Tatsuno, K.2    Yamamoto, S.3
  • 12
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H and Durbin R: Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595, 2010.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 13
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li H, Handsaker B, Wysoker A, et al: The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 14
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt DC, Zhang Q, Larson DE, et al: VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22: 568-576, 2012.
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3
  • 15
    • 84867301515 scopus 로고    scopus 로고
    • Predicting the functional effect of amino acid substitutions and indels
    • Choi Y, Sims GE, Murphy S, Miller JR and Chan AP: Predicting the functional effect of amino acid substitutions and indels. PLoS One 7: e46688, 2012.
    • (2012) PLoS One , vol.7
    • Choi, Y.1    Sims, G.E.2    Murphy, S.3    Miller, J.R.4    Chan, A.P.5
  • 16
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: Predicting amino acid changes that affect protein function
    • Ng PC and Henikoff S: SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res 31: 3812-3814, 2003.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 17
    • 34047210411 scopus 로고    scopus 로고
    • TP53 mutations and hepatocellular carcinoma: Insights into the etiology and pathogenesis of liver cancer
    • Hussain SP, Schwank J, Staib F, Wang XW and Harris CC: TP53 mutations and hepatocellular carcinoma: insights into the etiology and pathogenesis of liver cancer. Oncogene 26: 2166-2176, 2007.
    • (2007) Oncogene , vol.26 , pp. 2166-2176
    • Hussain, S.P.1    Schwank, J.2    Staib, F.3    Wang, X.W.4    Harris, C.C.5
  • 18
    • 77349085585 scopus 로고    scopus 로고
    • Identification of novel oncogenes and tumor suppressors in hepatocellular carcinoma
    • Imbeaud S, Ladeiro Y and Zucman-Rossi J: Identification of novel oncogenes and tumor suppressors in hepatocellular carcinoma. Semin Liver Dis 30: 75-86, 2010.
    • (2010) Semin Liver Dis , vol.30 , pp. 75-86
    • Imbeaud, S.1    Ladeiro, Y.2    Zucman-Rossi, J.3
  • 20
    • 0348013131 scopus 로고    scopus 로고
    • Synergistic interaction between aflatoxin B1 and hepatitis B virus in hepatocarcinogenesis
    • Kew MC: Synergistic interaction between aflatoxin B1 and hepatitis B virus in hepatocarcinogenesis. Liver Int 23: 405-409, 2003.
    • (2003) Liver Int , vol.23 , pp. 405-409
    • Kew, M.C.1
  • 22
    • 0026518760 scopus 로고
    • P53 mutations cluster at codon 249 in hepatitis B virus-positive hepatocellular carcinomas from China
    • Scorsone KA, Zhou YZ, Butel JS and Slagle BL: p53 mutations cluster at codon 249 in hepatitis B virus-positive hepatocellular carcinomas from China. Cancer Res 52: 1635-1638, 1992.
    • (1992) Cancer Res , vol.52 , pp. 1635-1638
    • Scorsone, K.A.1    Zhou, Y.Z.2    Butel, J.S.3    Slagle, B.L.4
  • 23
    • 0025828517 scopus 로고
    • Selective G to T mutations of p53 gene in hepatocellular carcinoma from southern Africa
    • Bressac B, Kew M, Wands J and Ozturk M: Selective G to T mutations of p53 gene in hepatocellular carcinoma from southern Africa. Nature 350: 429-431, 1991.
    • (1991) Nature , vol.350 , pp. 429-431
    • Bressac, B.1    Kew, M.2    Wands, J.3    Ozturk, M.4
  • 24
    • 77955388300 scopus 로고    scopus 로고
    • Effects of the TP53 p. R249S mutant on proliferation and clonogenic properties in human hepatocellular carcinoma cell lines interaction with hepatitis B virus X protein
    • Gouas DA, Shi H, Hautefeuille AH, et al: Effects of the TP53 p.R249S mutant on proliferation and clonogenic properties in human hepatocellular carcinoma cell lines: interaction with hepatitis B virus X protein. Carcinogenesis 31: 1475-1482, 2010.
    • (2010) Carcinogenesis , vol.31 , pp. 1475-1482
    • Gouas, D.A.1    Shi, H.2    Hautefeuille, A.H.3
  • 25
    • 0036866596 scopus 로고    scopus 로고
    • Multifunctional zinc finger proteins in development and disease
    • Ladomery M and Dellaire G: Multifunctional zinc finger proteins in development and disease. Ann Hum Genet 66: 331-342, 2002.
    • (2002) Ann Hum Genet , vol.66 , pp. 331-342
    • Ladomery, M.1    Dellaire, G.2
  • 26
    • 0029073527 scopus 로고
    • Transcription factors: Structure, function, and implication in malignant growth
    • Papavassiliou AG: Transcription factors: structure, function, and implication in malignant growth. Anticancer Res 15: 891-894, 1995.
    • (1995) Anticancer Res , vol.15 , pp. 891-894
    • Papavassiliou, A.G.1
  • 27
    • 0033604453 scopus 로고    scopus 로고
    • Overexpression of dominant negative PARP interferes with tumor formation of HeLa cells in nude mice: Evidence for increased tumor cell apoptosis in vivo
    • Hans MA, Müller M, Meyer-Ficca M, Bürkle A and Küpper JH: Overexpression of dominant negative PARP interferes with tumor formation of HeLa cells in nude mice: evidence for increased tumor cell apoptosis in vivo. Oncogene 18: 7010-7015, 1999.
    • (1999) Oncogene , vol.18 , pp. 7010-7015
    • Hans, M.A.1    Müller, M.2    Meyer-Ficca, M.3    Bürkle, A.4    Küpper, J.H.5
  • 28
    • 79953780417 scopus 로고    scopus 로고
    • FLNA and PGK1 are two potential markers for progression in hepatocellular carcinoma
    • Ai J, Huang H, Lv X, et al: FLNA and PGK1 are two potential markers for progression in hepatocellular carcinoma. Cell Physiol Biochem 27: 207-216, 2011.
    • (2011) Cell Physiol Biochem , vol.27 , pp. 207-216
    • Ai, J.1    Huang, H.2    Lv, X.3
  • 29
    • 37549071388 scopus 로고    scopus 로고
    • Adaptation versus selection: The origins of metastatic behavior
    • Scheel C, Onder T, Karnoub A and Weinberg RA: Adaptation versus selection: the origins of metastatic behavior. Cancer Res 67: 11476-11480, 2007.
    • (2007) Cancer Res , vol.67 , pp. 11476-11480
    • Scheel, C.1    Onder, T.2    Karnoub, A.3    Weinberg, R.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.