메뉴 건너뛰기




Volumn 55, Issue 1, 2013, Pages 17-26

Comparative assessment of 5′ A/T-rich overhang sequences with optimal and sub-optimal primers to increase PCR yields and sensitivity

Author keywords

5 A T rich flap; Diagnostics; DNA amplification; Primer design; qPCR; Tobacco mosaic virus

Indexed keywords

COMPARATIVE ASSESSMENT; CYCLING CONDITIONS; DNA AMPLIFICATION; OLIGONUCLEOTIDE PRIMERS; PRIMER DESIGN; QPCR; THERMODYNAMICS PARAMETERS; TOBACCO MOSAIC VIRUS;

EID: 84882451678     PISSN: 10736085     EISSN: 15590305     Source Type: Journal    
DOI: 10.1007/s12033-012-9617-5     Document Type: Article
Times cited : (38)

References (21)
  • 1
    • 0022372670 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • 10.1126/science.2999980 1:CAS:528:DyaL28XivFOrsw%3D%3D
    • Saiki, R., Scharf, S. J., Faloona, F., Mullis, K. B., Horn, G. T., & Erlich, H. (1985). Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science, 230, 1350-1354.
    • (1985) Science , vol.230 , pp. 1350-1354
    • Saiki, R.1    Scharf, S.J.2    Faloona, F.3    Mullis, K.B.4    Horn, G.T.5    Erlich, H.6
  • 2
    • 0023850178 scopus 로고
    • Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
    • 10.1126/science.2448875 1:CAS:528:DyaL1cXht1Ogt7k%3D
    • Saiki, S., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., et al. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239, 487-491.
    • (1988) Science , vol.239 , pp. 487-491
    • Saiki, S.1    Gelfand, D.H.2    Stoffel, S.3    Scharf, S.J.4    Higuchi, R.5    Horn, G.T.6    Mullis, K.B.7    Ellis, H.A.8
  • 3
    • 84862800775 scopus 로고    scopus 로고
    • PCR and isothermal-based molecular identification of the stored-product psocid pest Lepinotus reticulatus (Psocoptera: Trogiidae)
    • 10.1016/j.jspr.2012.02.001 1:CAS:528:DC%2BC38Xls12hu7s%3D
    • Arif, M., Ochoa-Corona, F. M., Opit, G., Li, Z. H., Kuč erová, Z., Stejskal, V., et al. (2012). PCR and isothermal-based molecular identification of the stored-product psocid pest Lepinotus reticulatus (Psocoptera: Trogiidae). Journal of Stored Product Research, 49, 184-188.
    • (2012) Journal of Stored Product Research , vol.49 , pp. 184-188
    • Arif, M.1    Ochoa-Corona, F.M.2    Opit, G.3    Li, Z.H.4    Kučerová, Z.5    Stejskal, V.6    Yang, Q.Q.7
  • 4
    • 43949111340 scopus 로고    scopus 로고
    • The development of rapid real-time PCR detection system for Vibrio parahaemolyticus in raw oyster
    • 10.1111/j.1472-765X.2008.02368.x 1:CAS:528:DC%2BD1cXotFeiu7Y%3D
    • Kim, J. S., Lee, G. G., Kim, J., Kwon, J. Y., & Kwon, S. T. (2008). The development of rapid real-time PCR detection system for Vibrio parahaemolyticus in raw oyster. Letters in Applied Microbiology, 46, 649-654.
    • (2008) Letters in Applied Microbiology , vol.46 , pp. 649-654
    • Kim, J.S.1    Lee, G.G.2    Kim, J.3    Kwon, J.Y.4    Kwon, S.T.5
  • 5
    • 16444382036 scopus 로고    scopus 로고
    • Real-time detection of gene expression in cancer cells using molecular beacon imaging: New strategies for cancer research
    • 10.1158/0008-5472.CAN-04-3196 1:CAS:528:DC%2BD2MXitVOjtrk%3D
    • Peng, X. H., Cao, Z. H., Xia, J. T., Carlson, G. W., Lewis, M. M., Wood, W. C., et al. (2005). Real-time detection of gene expression in cancer cells using molecular beacon imaging: New strategies for cancer research. Cancer Research, 65, 1909-1917.
    • (2005) Cancer Research , vol.65 , pp. 1909-1917
    • Peng, X.H.1    Cao, Z.H.2    Xia, J.T.3    Carlson, G.W.4    Lewis, M.M.5    Wood, W.C.6    Yang, L.7
  • 7
    • 0025361539 scopus 로고
    • A computer program for selection of oligonucleotide primers for polymerase chain reactions
    • 10.1093/nar/18.7.1757 1:CAS:528:DyaK3cXitlSrsbs%3D
    • Lowe, T., Sharefkin, J., Yang, S. Q., & Dieffenbach, C. W. (1990). A computer program for selection of oligonucleotide primers for polymerase chain reactions. Nucleic Acids Research, 18, 1757-1761.
    • (1990) Nucleic Acids Research , vol.18 , pp. 1757-1761
    • Lowe, T.1    Sharefkin, J.2    Yang, S.Q.3    Dieffenbach, C.W.4
  • 9
    • 0002556146 scopus 로고
    • Some molecular details of the secondary structure of ribonucleic acid
    • 10.1038/188098a0 1:CAS:528:DyaF3MXjvVaqtA%3D%3D
    • Fresco, J. R., Alberts, B. M., & Doty, P. (1960). Some molecular details of the secondary structure of ribonucleic acid. Nature, 188, 98-101.
    • (1960) Nature , vol.188 , pp. 98-101
    • Fresco, J.R.1    Alberts, B.M.2    Doty, P.3
  • 11
    • 0042121256 scopus 로고    scopus 로고
    • MFold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595 1:CAS:528:DC%2BD3sXltVWisr8%3D
    • Zuker, M. (2003). mFold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research, 31, 3406-3415.
    • (2003) Nucleic Acids Research , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 12
    • 49549090200 scopus 로고    scopus 로고
    • Use of primers with 5′ non-complementary sequences in RT-PCR for the detection of nepovirus sub groups A and B
    • 10.1016/j.jviromet.2008.06.020 1:CAS:528:DC%2BD1cXhtVagurjI
    • Wei, T., & Clover, G. (2008). Use of primers with 5′ non-complementary sequences in RT-PCR for the detection of nepovirus sub groups A and B. Journal of Virological Methods, 153, 16-21.
    • (2008) Journal of Virological Methods , vol.153 , pp. 16-21
    • Wei, T.1    Clover, G.2
  • 14
    • 34247604019 scopus 로고    scopus 로고
    • 5′ Tailed sequencing primers improve sequencing quality of PCR products
    • 10.2144/000112316 1:CAS:528:DC%2BD2sXhvFWisb0%3D
    • Binladen, J., Gilbert, M. T., Campos, P. F., & Willerslev, E. (2007). 5′ Tailed sequencing primers improve sequencing quality of PCR products. BioTechniques, 42, 174-176.
    • (2007) BioTechniques , vol.42 , pp. 174-176
    • Binladen, J.1    Gilbert, M.T.2    Campos, P.F.3    Willerslev, E.4
  • 16
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the www for general users and for biologist programmers
    • S. Krawetz S. Misener (eds) Humana Press Totowa, NJ
    • Rozen, S., & Skaletsky, H. J. (2000). Primer3 on the www for general users and for biologist programmers. In S. Krawetz & S. Misener (Eds.), Bioinformatics methods and protocols: Methods in molecular biology (pp. 365-386). Totowa, NJ: Humana Press.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 19
    • 77149168393 scopus 로고    scopus 로고
    • Validation of primer design for plant virus diagnostics using the web-interface pathway Primer3-mFOLD-BLASTn
    • Ochoa Corona, F. M., Tang, J., Lebas, B. S. M., & Alexander, B. (2007). Validation of primer design for plant virus diagnostics using the web-interface pathway Primer3-mFOLD-BLASTn. Phytopathology, 97, S86.
    • (2007) Phytopathology , vol.97 , pp. 86
    • Ochoa Corona, F.M.1    Tang, J.2    Lebas, B.S.M.3    Alexander, B.4
  • 21
    • 84882451900 scopus 로고    scopus 로고
    • Detection and discrimination of Pythium aphanidermatum and P. Deliense by single probe based real time PCR and multiplex end point PCR
    • Arif, M., Garzon, C. D., & Ochoa-Corona, F. M. (2011). Detection and discrimination of Pythium aphanidermatum and P. deliense by single probe based real time PCR and multiplex end point PCR. Phytopathology, 101, S9.
    • (2011) Phytopathology , vol.101 , pp. 9
    • Arif, M.1    Garzon, C.D.2    Ochoa-Corona, F.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.