-
1
-
-
79951493627
-
On the future of genomic data
-
10.1126/science.1197891, 21311016
-
Kahn SD. On the future of genomic data. Science 2011, 331:728-729. 10.1126/science.1197891, 21311016.
-
(2011)
Science
, vol.331
, pp. 728-729
-
-
Kahn, S.D.1
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0031743421
-
Profile hidden Markov models
-
10.1093/bioinformatics/14.9.755, 9918945
-
Eddy SR. Profile hidden Markov models. Bioinformatics 1998, 14:755-763. 10.1093/bioinformatics/14.9.755, 9918945.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
4
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
5
-
-
36448991500
-
Clustal W and Clustal × version 2.0
-
10.1093/bioinformatics/btm404, 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. Clustal W and Clustal × version 2.0. Bioinformatics 2007, 23:2947-2948. 10.1093/bioinformatics/btm404, 17846036.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
6
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
10.1093/bioinformatics/17.8.754, 11524383
-
Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755. 10.1093/bioinformatics/17.8.754, 11524383.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
7
-
-
33746047855
-
The Design, Implementation, and Evaluation of mpiBLAST
-
Darling A, Carey L, Feng W. The Design, Implementation, and Evaluation of mpiBLAST. Proceedings of ClusterWorld 2003,
-
(2003)
Proceedings of ClusterWorld
-
-
Darling, A.1
Carey, L.2
Feng, W.3
-
8
-
-
33746091677
-
ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis
-
Oehmen C, Nieplocha J. ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis. IEEE Trans Parallel Distrib Syst 2006, 17:740-749.
-
(2006)
IEEE Trans Parallel Distrib Syst
, vol.17
, pp. 740-749
-
-
Oehmen, C.1
Nieplocha, J.2
-
10
-
-
0041386069
-
ClustalW-MPI: ClustalW analysis using distributed and parallel computing
-
10.1093/bioinformatics/btg192, 12912844
-
Li K-B. ClustalW-MPI: ClustalW analysis using distributed and parallel computing. Bioinformatics 2003, 19:1585-1586. 10.1093/bioinformatics/btg192, 12912844.
-
(2003)
Bioinformatics
, vol.19
, pp. 1585-1586
-
-
Li, K.-B.1
-
11
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
10.1093/bioinformatics/btg180, 12912839
-
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574. 10.1093/bioinformatics/btg180, 12912839.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
12
-
-
47349110558
-
Massively parallel BLAST for the Blue Gene/L
-
Rangwala H, Lantz E, Musselman R, Pinnow K, Smith B, Wallenfelt B. Massively parallel BLAST for the Blue Gene/L. High Availability and Performance Computing Workshop 2005,
-
(2005)
High Availability and Performance Computing Workshop
-
-
Rangwala, H.1
Lantz, E.2
Musselman, R.3
Pinnow, K.4
Smith, B.5
Wallenfelt, B.6
-
13
-
-
33746293354
-
Efficient Data Access for Parallel BLAST
-
Heshan L, Xiaosong M, Chandramohan P, Geist A, Samatova N. Efficient Data Access for Parallel BLAST. Parallel and Distributed Processing Symposium, 2005 19th IEEE International 2005, 72b-72b.
-
(2005)
Parallel and Distributed Processing Symposium, 2005 19th IEEE International
-
-
Heshan, L.1
Xiaosong, M.2
Chandramohan, P.3
Geist, A.4
Samatova, N.5
-
14
-
-
72949091654
-
HSP-HMMER: a tool for protein domain identification on a large scale
-
Honolulu, Hawaii: ACM
-
Rekapalli B, Halloy C, Zhulin IB. HSP-HMMER: a tool for protein domain identification on a large scale. 2009 ACM symposium on Applied Computing 2009, 766-770. Honolulu, Hawaii: ACM.
-
(2009)
2009 ACM symposium on Applied Computing
, pp. 766-770
-
-
Rekapalli, B.1
Halloy, C.2
Zhulin, I.B.3
-
15
-
-
80052332697
-
Autotuned parallel I/O for highly scalable biosequence analysis
-
Salt Lake City, Utah: ACM
-
You H, Rekapalli B, Liu Q, Moore S. Autotuned parallel I/O for highly scalable biosequence analysis. Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery 2011, 1-8. Salt Lake City, Utah: ACM.
-
(2011)
Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery
, pp. 1-8
-
-
You, H.1
Rekapalli, B.2
Liu, Q.3
Moore, S.4
-
16
-
-
84882383667
-
HSPp-BLAST: Highly Scalable Parallel PSI-BLAST for Very Large-scale Sequence Searches
-
Las Vegas, NV, Saeed F, Khokhar A, Al-Mubaid H
-
Rekepalli B, Vose A, Giblock P. HSPp-BLAST: Highly Scalable Parallel PSI-BLAST for Very Large-scale Sequence Searches. 3rd International Conference on Bioinformatics and Computational Biology (BICoB) 2012, 37-42. Las Vegas, NV, Saeed F, Khokhar A, Al-Mubaid H.
-
(2012)
3rd International Conference on Bioinformatics and Computational Biology (BICoB)
, pp. 37-42
-
-
Rekepalli, B.1
Vose, A.2
Giblock, P.3
-
17
-
-
75549084941
-
BioDrugScreen: a computational drug design resource for ranking molecules docked to the human proteome
-
10.1093/nar/gkp852, 2808957, 19923229
-
Li L, Bum-Erdene K, Baenziger PH, Rosen JJ, Hemmert JR, Nellis JA, Pierce ME, Meroueh SO. BioDrugScreen: a computational drug design resource for ranking molecules docked to the human proteome. Nucleic Acids Res 2010, 38:D765-773. 10.1093/nar/gkp852, 2808957, 19923229.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Li, L.1
Bum-Erdene, K.2
Baenziger, P.H.3
Rosen, J.J.4
Hemmert, J.R.5
Nellis, J.A.6
Pierce, M.E.7
Meroueh, S.O.8
-
18
-
-
84887141169
-
CHEMBIOGRID: All Cheminformatics Web Services
-
CHEMBIOGRID: All Cheminformatics Web Services. , http://www.chembiogrid.info/projects/proj_ws_all.html
-
-
-
-
19
-
-
84887197418
-
National Biomedical Computation Resource
-
National Biomedical Computation Resource. , http://www.nbcr.net
-
-
-
-
20
-
-
3242887695
-
Protein structure prediction and analysis using the Robetta server
-
10.1093/nar/gkh468, 441606, 15215442
-
Kim DE, Chivian D, Baker D. Protein structure prediction and analysis using the Robetta server. Nucleic Acids Research 2004, 32:W526-W531. 10.1093/nar/gkh468, 441606, 15215442.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Kim, D.E.1
Chivian, D.2
Baker, D.3
-
22
-
-
56649121761
-
TeraGrid Science Gateways and Their Impact on Science
-
Wilkins-Diehr N, Gannon D, Klimeck G, Oster S, Pamidighantam S. TeraGrid Science Gateways and Their Impact on Science. Computer 2008, 41:32-41.
-
(2008)
Computer
, vol.41
, pp. 32-41
-
-
Wilkins-Diehr, N.1
Gannon, D.2
Klimeck, G.3
Oster, S.4
Pamidighantam, S.5
-
23
-
-
25844449770
-
Galaxy: a platform for interactive large-scale genome analysis
-
10.1101/gr.4086505, 1240089, 16169926
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, et al. Galaxy: a platform for interactive large-scale genome analysis. Genome Res 2005, 15:1451-1455. 10.1101/gr.4086505, 1240089, 16169926.
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
-
24
-
-
77955037242
-
Taverna, reloaded
-
Heidelberg, Germany: Springer, Gertz M, Ludascher B
-
Missier P, Soiland-Reyes S, Owen S, Tan W, Nenadic A, Dunlop I, Williams A, Oinn T, Goble C. Taverna, reloaded. Scientific and Statistical Database Management 2010, 6187:471-481. Heidelberg, Germany: Springer, Gertz M, Ludascher B.
-
(2010)
Scientific and Statistical Database Management
, vol.6187
, pp. 471-481
-
-
Missier, P.1
Soiland-Reyes, S.2
Owen, S.3
Tan, W.4
Nenadic, A.5
Dunlop, I.6
Williams, A.7
Oinn, T.8
Goble, C.9
-
26
-
-
0034268943
-
A Portable Programming Interface for Performance Evaluation on Modern Processors
-
Browne S, Dongarra J, Garner N, Ho G, Mucci P. A Portable Programming Interface for Performance Evaluation on Modern Processors. International Journal of High Performance Computing Applications 2000, 14:189-204.
-
(2000)
International Journal of High Performance Computing Applications
, vol.14
, pp. 189-204
-
-
Browne, S.1
Dongarra, J.2
Garner, N.3
Ho, G.4
Mucci, P.5
-
28
-
-
12244302088
-
Lustre: A Scalable, High-Performance File System
-
Cluster File Systems, Inc.
-
Cluster File Systems, Inc. Lustre: A Scalable, High-Performance File System. Technical report 2002, Cluster File Systems, Inc.
-
(2002)
Technical report
-
-
-
29
-
-
33749573349
-
Extensible Markup Language (XML) 1.1 (Second Edition)
-
W3C
-
Bray T, Paoli J, Sperberg-McQueen CM, Maler E, Yergeau F, Cowan J. Extensible Markup Language (XML) 1.1 (Second Edition). 2006, W3C.
-
(2006)
-
-
Bray, T.1
Paoli, J.2
Sperberg-McQueen, C.M.3
Maler, E.4
Yergeau, F.5
Cowan, J.6
-
30
-
-
77950012959
-
HUBzero: A Platform for Dissemination and Collaboration in Computational Science and Engineering
-
3638642, 23653898
-
McLennan M, Kennell R. HUBzero: A Platform for Dissemination and Collaboration in Computational Science and Engineering. Computing in Science & Engineering 2010, 12:48-53. 3638642, 23653898.
-
(2010)
Computing in Science & Engineering
, vol.12
, pp. 48-53
-
-
McLennan, M.1
Kennell, R.2
-
31
-
-
84887162771
-
The CIPRES Science Gateway: Enabling High-Impact Science for Phylogenetics Researchers with Limited Resources
-
Chicago, IL, USA
-
Miller MA, Pfeiffer W, Schwartz T. The CIPRES Science Gateway: Enabling High-Impact Science for Phylogenetics Researchers with Limited Resources. XSEDE12 2012, Chicago, IL, USA.
-
(2012)
XSEDE12
-
-
Miller, M.A.1
Pfeiffer, W.2
Schwartz, T.3
-
32
-
-
84887191426
-
Java Struts 2
-
Java Struts 2. , http://struts.apache.org/
-
-
-
|