Autotuned parallel I/O for highly scalable biosequence analysis

Proceedings of the TeraGrid 2011 Conference: Extreme Digital Discovery, TG'11

Volumn , Issue , 2011, Pages

  You, Haihang ^a   Rekapalli, Bhanu ^a   Liu, Qing ^a   Moore, Shirley ^b  

^a National Institute for Computational Sciences   (United States)

^b University of Tennessee   (United States)

Author keywords

auto tuning; bioinformatic; hidden Markov models; massively parallel; parallel I O

Indexed keywords

AUTOTUNING; BIOINFORMATICS TOOLS; COMPUTATIONAL POWER; CRITICAL STEPS; DOMAIN IDENTIFICATION; EXPONENTIAL RATES; GENOMICS; LINEAR SPEED-UP; MASSIVELY PARALLEL; MASSIVELY PARALLEL COMPUTERS; PARALLEL I/O; PARALLEL IMPLEMENTATIONS; PROFILE HIDDEN MARKOV MODEL; PROTEIN DOMAINS; RAPID ANALYSIS; SEQUENCE DATABASE; SEQUENCE GENERATION;

BIOINFORMATICS; METADATA; SUPERCOMPUTERS;

HIDDEN MARKOV MODELS;

EID: 80052332697     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/2016741.2016772     Document Type: Conference Paper

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