메뉴 건너뛰기




Volumn 4, Issue 16, 2013, Pages 2739-2744

Tracking DNA excited states by picosecond-time-resolved infrared spectroscopy: Signature band for a charge-transfer excited state in stacked adenine-thymine systems

Author keywords

charge transfer; excited state; picosecond; polynucleotide DNA; transient spectroscopy

Indexed keywords

BIEXPONENTIAL DECAY; CHARGE-TRANSFER EXCITED STATE; ELECTRONIC EXCITED STATE; ELECTRONIC GROUND STATE; PICOSECONDS; POLYNUCLEOTIDES; SHORT-LIVED SPECIES; TRANSIENT SPECTROSCOPY;

EID: 84882323079     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz401258n     Document Type: Article
Times cited : (77)

References (42)
  • 3
    • 77954255381 scopus 로고    scopus 로고
    • Nonradiative Decay Mechanisms in DNA Model Systems
    • Kohler, B. Nonradiative Decay Mechanisms in DNA Model Systems J. Phys. Chem. Lett. 2010, 1, 2047-2053
    • (2010) J. Phys. Chem. Lett. , vol.1 , pp. 2047-2053
    • Kohler, B.1
  • 4
    • 0037206814 scopus 로고    scopus 로고
    • Fluorescence Properties of DNA Nucleosides and Nucleotides: A Refined Steady-State and Femtosecond Investigation
    • Onidas, D.; Markovitsi, D.; Marguet, S.; Sharonov, A.; Gustavsson, T. Fluorescence Properties of DNA Nucleosides and Nucleotides: A Refined Steady-State and Femtosecond Investigation J. Phys. Chem. B 2002, 106, 11367-11374
    • (2002) J. Phys. Chem. B , vol.106 , pp. 11367-11374
    • Onidas, D.1    Markovitsi, D.2    Marguet, S.3    Sharonov, A.4    Gustavsson, T.5
  • 5
    • 78649671522 scopus 로고    scopus 로고
    • Fluorescence of DNA Duplexes: From Model Helices to Natural DNA
    • Markovitsi, D.; Gustavsson, T.; Vayá, I. Fluorescence of DNA Duplexes: From Model Helices to Natural DNA J. Phys. Chem. Lett. 2010, 1, 3271-3276
    • (2010) J. Phys. Chem. Lett. , vol.1 , pp. 3271-3276
    • Markovitsi, D.1    Gustavsson, T.2    Vayá, I.3
  • 6
    • 77954307656 scopus 로고    scopus 로고
    • DNA/RNA: Building Blocks of Life under UV Irradiation
    • Gustavsson, T.; Improta, R.; Markovitsi, D. DNA/RNA: Building Blocks of Life Under UV Irradiation J. Phys Chem. Lett. 2010, 1, 2025-2030
    • (2010) J. Phys Chem. Lett. , vol.1 , pp. 2025-2030
    • Gustavsson, T.1    Improta, R.2    Markovitsi, D.3
  • 7
    • 62849101535 scopus 로고    scopus 로고
    • Are the Five Natural DNA/RNA Base Monomers a Good Choice from Natural Selection? A Photochemical Perspective
    • Serrano-Andrés, L.; Merchán, J. M. Are the Five Natural DNA/RNA Base Monomers a Good Choice from Natural Selection? A Photochemical Perspective Photochem. Photobiol., C 2009, 10, 21-32
    • (2009) Photochem. Photobiol., C , vol.10 , pp. 21-32
    • Serrano-Andrés, L.1    Merchán, J.M.2
  • 8
    • 53749094033 scopus 로고    scopus 로고
    • Base Sequence and Higher-Order Structure Induce the Complex Excited-State Dynamics in DNA
    • Schwalb, N. K.; Temps, F. Base Sequence and Higher-Order Structure Induce the Complex Excited-State Dynamics in DNA Science 2008, 322, 243-245
    • (2008) Science , vol.322 , pp. 243-245
    • Schwalb, N.K.1    Temps, F.2
  • 9
    • 67650187896 scopus 로고    scopus 로고
    • Exciting DNA
    • Fiebig, T. Exciting DNA J. Phys. Chem. B 2009, 113, 9348-9349
    • (2009) J. Phys. Chem. B , vol.113 , pp. 9348-9349
    • Fiebig, T.1
  • 10
    • 67649878998 scopus 로고    scopus 로고
    • Recent Advances in the Use of Transient IR for the Detection of Ultrafast Species in DNA
    • Towrie, M.; Doorley, G. W.; George, M. W.; Parker, A. W.; Quinn, S. J.; Kelly, J. M. Recent Advances in the Use of Transient IR for the Detection of Ultrafast Species in DNA Analyst 2009, 134, 1265-1273
    • (2009) Analyst , vol.134 , pp. 1265-1273
    • Towrie, M.1    Doorley, G.W.2    George, M.W.3    Parker, A.W.4    Quinn, S.J.5    Kelly, J.M.6
  • 11
    • 84903294538 scopus 로고    scopus 로고
    • Infrared Spectroscopy of DNA
    • Springer: New York
    • Parker, A. W.;; Quinn, S. J. Infrared Spectroscopy of DNA. In Encyclopedia of Biophysics; Springer: New York, 2013; pp 1065-1075.
    • (2013) Encyclopedia of Biophysics , pp. 1065-1075
    • Parker, A.W.1    Quinn, S.J.2
  • 13
    • 79953050012 scopus 로고    scopus 로고
    • A Comparative Picosecond Transient Infrared Study of 1-Methylcytosine and 5-dCMP That Sheds Further Light on the Excited States of Cytosine Derivatives
    • Keane, P. M.; Wojdyla, M.; Doorley, G. W.; Watson, G. W.; Clark, I. P.; Greetham, G. M.; Parker, A. W.; Towrie, M.; Kelly, J. M.; Quinn, S. J. A Comparative Picosecond Transient Infrared Study of 1-Methylcytosine and 5′-dCMP That Sheds Further Light on the Excited States of Cytosine Derivatives J. Am. Chem. Soc. 2011, 133, 4212-4215
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 4212-4215
    • Keane, P.M.1    Wojdyla, M.2    Doorley, G.W.3    Watson, G.W.4    Clark, I.P.5    Greetham, G.M.6    Parker, A.W.7    Towrie, M.8    Kelly, J.M.9    Quinn, S.J.10
  • 14
    • 0014725117 scopus 로고
    • Oligonucleotide Interactions III. Circular Dichroism Studies of the Conformation of Deoxyoligonucleotides
    • Cantor, C., R.; Warshaw, M.; Shapiro, H. Oligonucleotide Interactions III. Circular Dichroism Studies of the Conformation of Deoxyoligonucleotides Biopolymers 1970, 9, 1059-1077
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor . C, R.1    Warshaw, M.2    Shapiro, H.3
  • 15
    • 0022589729 scopus 로고
    • Conformations of Dinucleoside Monophosphates in Relation to Duplex DNA Structures
    • Rao, S. N.; Sasisekharan, V. Conformations of Dinucleoside Monophosphates in Relation to Duplex DNA Structures Biopolymers 1986, 25, 17-30
    • (1986) Biopolymers , vol.25 , pp. 17-30
    • Rao, S.N.1    Sasisekharan, V.2
  • 16
    • 5844263771 scopus 로고
    • Vibrational and Vibronic Relaxation of Large Polyatomic Molecules in Liquids
    • Elsaesser, T.; Kaiser, W. Vibrational and Vibronic Relaxation of Large Polyatomic Molecules in Liquids Annu. Rev. Phys. Chem. 1991, 42, 83-107
    • (1991) Annu. Rev. Phys. Chem. , vol.42 , pp. 83-107
    • Elsaesser, T.1    Kaiser, W.2
  • 17
    • 26844461625 scopus 로고    scopus 로고
    • Vibrational Cooling after Photo Isomerisation: First Application of a Novel Intramolecular Thermometer
    • Hamm, P.; Ohline, S.; Zurek, M.; Röschinger, T. Vibrational Cooling After Photo Isomerisation: First Application of a Novel Intramolecular Thermometer Laser Chem. 1999, 19, 45-49
    • (1999) Laser Chem. , vol.19 , pp. 45-49
    • Hamm, P.1    Ohline, S.2    Zurek, M.3    Röschinger, T.4
  • 18
    • 20144369490 scopus 로고    scopus 로고
    • Monitoring the Effect of Ultrafast Deactivation of the Electronic Excited States of DNA Bases and Polynucleotides Following 267 nm Laser Excitation Using Picosecond Time-Resolved Infrared Spectroscopy
    • Kuimova, M. K.; Dyer, J.; George, M. W.; Grills, D. C.; Kelly, J. M.; Matousek, P.; Parker, A. W.; Sun, X. Z.; Towrie, M.; Whelan, A. M. Monitoring the Effect of Ultrafast Deactivation of the Electronic Excited States of DNA Bases and Polynucleotides Following 267 nm Laser Excitation Using Picosecond Time-Resolved Infrared Spectroscopy Chem. Commun. 2005, 1182-1184
    • (2005) Chem. Commun. , pp. 1182-1184
    • Kuimova, M.K.1    Dyer, J.2    George, M.W.3    Grills, D.C.4    Kelly, J.M.5    Matousek, P.6    Parker, A.W.7    Sun, X.Z.8    Towrie, M.9    Whelan, A.M.10
  • 19
    • 0034721472 scopus 로고    scopus 로고
    • Ultrafast Internal Conversion of Electronically Excited RNA and DNA Nucleosides in Water
    • Pecourt, J. M. L.; Peon, J.; Kohler, B. Ultrafast Internal Conversion of Electronically Excited RNA and DNA Nucleosides in Water J. Am. Chem. Soc. 2000, 122, 9348-9349
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 9348-9349
    • Pecourt, J.M.L.1    Peon, J.2    Kohler, B.3
  • 20
    • 48749126017 scopus 로고    scopus 로고
    • UV Excitation of Single DNA and RNA Strands Produces High Yields of Exciplex States between Two Stacked Bases
    • Takaya, T.; Su, C.; de La Harpe, K.; Crespo-Hernández, C. E.; Kohler, B. UV Excitation of Single DNA and RNA Strands Produces High Yields of Exciplex States Between Two Stacked Bases Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 10285-10290
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 10285-10290
    • Takaya, T.1    Su, C.2    De La Harpe, K.3    Crespo-Hernández, C.E.4    Kohler, B.5
  • 21
    • 67849114552 scopus 로고    scopus 로고
    • Both Intra and Interstrand Charge-Transfer Excited States in Aqueous B-DNA Are Present at Energies Comparable To, or Just Above, the 1 ππ Excitonic Bright States
    • Lange, A. W.; Herbert, J. M. Both Intra- and Interstrand Charge-Transfer Excited States in Aqueous B-DNA Are Present at Energies Comparable To, or Just Above, the 1 ππ * Excitonic Bright States J. Am. Chem. Soc. 2009, 131, 3913-3922
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 3913-3922
    • Lange, A.W.1    Herbert, J.M.2
  • 22
    • 4243553426 scopus 로고
    • A New Mixing of Hartree-Fock and Local Density-Functional Theories
    • Becke, A. D. A New Mixing of Hartree-Fock and Local Density-Functional Theories Phys. Rev. 1988, A38, 3098-3104
    • (1988) Phys. Rev. , vol.38 , pp. 3098-3104
    • Becke, A.D.1
  • 23
    • 33645898818 scopus 로고
    • Accurate and Simple Analytic Representation of the Electron-Gas Correlation Energy
    • Perdew, J. P.; Wang, Y. Accurate and Simple Analytic Representation of the Electron-Gas Correlation Energy Phys. Rev. B 1992, 45, 13244-13249
    • (1992) Phys. Rev. B , vol.45 , pp. 13244-13249
    • Perdew, J.P.1    Wang, Y.2
  • 25
    • 0035819028 scopus 로고    scopus 로고
    • Ab Initio Calculation of Amide Carbonyl Stretch Vibrational Frequencies in Solution with Modified Basis Sets. 1. N-Methyl Acetamide
    • Kubelka, J.; Keiderling, A. T. Ab Initio Calculation of Amide Carbonyl Stretch Vibrational Frequencies in Solution with Modified Basis Sets. 1. N-Methyl Acetamide J. Phys. Chem. A 2001, 5, 10922-10928
    • (2001) J. Phys. Chem. A , vol.5 , pp. 10922-10928
    • Kubelka, J.1    Keiderling, A.T.2
  • 26
    • 79955489694 scopus 로고    scopus 로고
    • Density Functional Theory Studies of the Extent of Hole Delocalization in One-Electron Oxidized Adenine and Guanine Base Stacks
    • Kumar, A.; Sevilla, M. D. Density Functional Theory Studies of the Extent of Hole Delocalization in One-Electron Oxidized Adenine and Guanine Base Stacks J. Phys. Chem. B 2011, 115, 4990-5000
    • (2011) J. Phys. Chem. B , vol.115 , pp. 4990-5000
    • Kumar, A.1    Sevilla, M.D.2
  • 27
    • 33748254145 scopus 로고    scopus 로고
    • Role of Sequence and Conformation on the Photochemistry and the Photophysics of A-T DNA Dimers: An Experimental and Computational Approach
    • Colón, L.; Crespo-Hernández, C. E.; Oyola, R.; García, C.; Arce, R. Role of Sequence and Conformation on the Photochemistry and the Photophysics of A-T DNA Dimers: An Experimental and Computational Approach J. Phys. Chem. B 2006, 110, 15589-15596
    • (2006) J. Phys. Chem. B , vol.110 , pp. 15589-15596
    • Colón, L.1    Crespo-Hernández, C.E.2    Oyola, R.3    García, C.4    Arce, R.5
  • 28
    • 34547141382 scopus 로고    scopus 로고
    • Influence of Base Stacking on Excited-State Behavior of Polyadenine in Water, Based on Time-Dependent Density Functional Calculations
    • Santoro, F.; Barone, V.; Improta, R. Influence of Base Stacking on Excited-State Behavior of Polyadenine in Water, Based on Time-Dependent Density Functional Calculations Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 9931-9936
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 9931-9936
    • Santoro, F.1    Barone, V.2    Improta, R.3
  • 29
    • 43049167327 scopus 로고    scopus 로고
    • Time-Resolved Infrared Spectroscopy of the Lowest Triplet State of Thymine and Thymidine
    • Hare, P. M.; Middleton, C. T.; Mertel, K. I.; Herbert, J. M.; Kohler, B. Time-Resolved Infrared Spectroscopy of the Lowest Triplet State of Thymine and Thymidine Chem. Phys. 2008, 347, 383-392
    • (2008) Chem. Phys. , vol.347 , pp. 383-392
    • Hare, P.M.1    Middleton, C.T.2    Mertel, K.I.3    Herbert, J.M.4    Kohler, B.5
  • 30
    • 0042823959 scopus 로고    scopus 로고
    • Vibrational Analysis of Carbonyl Modes in Different Stages of Light-Induced Cyclopyrimidine Dimer Repair Reactions
    • Schmitz, M.; Tavan, P.; Nonella, M. Vibrational Analysis of Carbonyl Modes in Different Stages of Light-Induced Cyclopyrimidine Dimer Repair Reactions Chem. Phys. Lett. 2001, 349, 342-348
    • (2001) Chem. Phys. Lett. , vol.349 , pp. 342-348
    • Schmitz, M.1    Tavan, P.2    Nonella, M.3
  • 31
    • 0016783727 scopus 로고
    • Studies on Thymine and Uracil Triplet Excited State in Acetonitrile and Water
    • Salet, C.; Bensasson, R. Studies on Thymine and Uracil Triplet Excited State in Acetonitrile and Water Photochem.and Photobio. 1975, 22, 231-235
    • (1975) Photochem.And Photobio. , vol.22 , pp. 231-235
    • Salet, C.1    Bensasson, R.2
  • 32
    • 84863888110 scopus 로고    scopus 로고
    • Electronic Excitation Energy Transfer between Nucleobases of Natural DNA
    • Vayá, I.; Gustavsson, T.; Douki, T.; Berlin, Y.; Markovitsi, D. Electronic Excitation Energy Transfer Between Nucleobases of Natural DNA J. Am. Chem. Soc. 2012, 134, 11366-11368
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 11366-11368
    • Vayá, I.1    Gustavsson, T.2    Douki, T.3    Berlin, Y.4    Markovitsi, D.5
  • 33
    • 24144459117 scopus 로고    scopus 로고
    • Base Stacking Controls Excited-State Dynamics in A·T DNA
    • Crespo-Hernández, C. E.; Cohen, B.; Kohler, B. Base Stacking Controls Excited-State Dynamics in A·T DNA Nature 2005, 436, 1141-1144
    • (2005) Nature , vol.436 , pp. 1141-1144
    • Crespo-Hernández, C.E.1    Cohen, B.2    Kohler, B.3
  • 34
    • 34548810221 scopus 로고    scopus 로고
    • Fluorescence of the DNA Double-Helices (dAdT)n·(dAdT)n Studied by Femtosecond Spectroscopy
    • Onidas, D.; Gustavsson, T.; Lazzarotto, E.; Markovitsi, D. Fluorescence of the DNA Double-Helices (dAdT)n·(dAdT)n Studied by Femtosecond Spectroscopy Phys. Chem. Chem. Phys. 2007, 9, 5143-5148
    • (2007) Phys. Chem. Chem. Phys. , vol.9 , pp. 5143-5148
    • Onidas, D.1    Gustavsson, T.2    Lazzarotto, E.3    Markovitsi, D.4
  • 35
    • 29044439636 scopus 로고    scopus 로고
    • Collective Behavior of Franck-Condon Excited States and Energy Transfer in DNA Double Helices
    • Markovitsi, D.; Onidas, D.; Gustavsson, T.; Talbot, F.; Lazzarotto, E. Collective Behavior of Franck-Condon Excited States and Energy Transfer in DNA Double Helices J. Am. Chem. Soc. 2005, 127, 17130-17131
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 17130-17131
    • Markovitsi, D.1    Onidas, D.2    Gustavsson, T.3    Talbot, F.4    Lazzarotto, E.5
  • 36
    • 70349233899 scopus 로고    scopus 로고
    • Bright" and "dark" Excited States of an Alternating at Oligomer Characterized by Femtosecond Broadband Spectroscopy
    • Kwok, W.-M.; Ma, C.; Phillips, D. L. Bright" and "Dark" Excited States of an Alternating AT Oligomer Characterized by Femtosecond Broadband Spectroscopy J. Phys. Chem. B 2009, 113, 11527-11534
    • (2009) J. Phys. Chem. B , vol.113 , pp. 11527-11534
    • Kwok, W.-M.1    Ma, C.2    Phillips, D.L.3
  • 38
    • 34447638886 scopus 로고    scopus 로고
    • Frenkel Exciton Model of Ultrafast Excited State Dynamics in at DNA Double Helices
    • Bittner, E. R. J. Frenkel Exciton Model of Ultrafast Excited State Dynamics in AT DNA Double Helices Photochem. Photobiol., A 2007, 190, 328-334
    • (2007) Photochem. Photobiol., A , vol.190 , pp. 328-334
    • Bittner, E.R.J.1
  • 39
    • 84881090106 scopus 로고    scopus 로고
    • Electronic Coupling between Photo-Excited Stacked Bases in DNA and RNA Strands with Emphasis on the Bright States Initially Populated
    • Nielsen, L. M.; Hoffmann, S. V.; Nielsen, S. B. Electronic Coupling Between Photo-Excited Stacked Bases in DNA and RNA Strands with Emphasis on the Bright States Initially Populated Photochem. Photobiol. Sci. 2013, 12, 1273-1285
    • (2013) Photochem. Photobiol. Sci. , vol.12 , pp. 1273-1285
    • Nielsen, L.M.1    Hoffmann, S.V.2    Nielsen, S.B.3
  • 40
    • 77953924714 scopus 로고    scopus 로고
    • Infrared Characterization of the Guanine Radical Cation: Finger Printing DNA Damage
    • Parker, A. W.; Lin, C. Y; George, M. W; Towrie, M.; Kuimova, M. K. Infrared Characterization of the Guanine Radical Cation: Finger Printing DNA Damage J. Phys. Chem. B 2010, 114, 3660-3667
    • (2010) J. Phys. Chem. B , vol.114 , pp. 3660-3667
    • Parker, A.W.1    Lin, C.Y.2    George, M.W.3    Towrie, M.4    Kuimova, M.K.5
  • 41
    • 0020526968 scopus 로고
    • Formation of an Adenine-Thymine Photoadduct in the Deoxydinucleoside Monophosphate d(TpA) and in DNA
    • Bose, S. N.; Davies, R. J.; Sethi, S. K.; McCloskey, J. A. Formation of an Adenine-Thymine Photoadduct in the Deoxydinucleoside Monophosphate d(TpA) and in DNA Science 1983, 220, 723-725
    • (1983) Science , vol.220 , pp. 723-725
    • Bose, S.N.1    Davies, R.J.2    Sethi, S.K.3    McCloskey, J.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.