Vertical profiles of community and activity of methanotrophs in landfill cover soils of different age

Journal of Applied Microbiology

Volumn 115, Issue 3, 2013, Pages 756-765

  Kong, J Y ^a   Su, Y ^a   Zhang, Q Q ^a   Bai, Y ^a   Xia, F F ^a   Fang, C R ^b   He, R ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

Landfill age; Landfill cover soil; Methanotrophs; Microbial community

Indexed keywords

LAND FILL; OXIDATION;

CH 4; DIFFERENT AGES; LANDFILL AGE; LANDFILL-COVER SOILS; METHANOTROPHS; MICROBIAL COMMUNITIES; OXIDATION ACTIVITIES; PROCESS CONTROLLING; TYPE II; VERTICAL PROFILE;

SOILS;

AGE; CARBON FLUX; COMMUNITY STRUCTURE; LANDFILL LINER; METHANOTROPHY; MICROBIAL ACTIVITY; OXIDATION; RELATIVE ABUNDANCE; SOIL DEPTH; SOIL MICROORGANISM; SPECIES DIVERSITY; VERTICAL PROFILE;

AGE DISTRIBUTION; ARTICLE; COMMUNITY STRUCTURE; CONCENTRATION (PARAMETERS); GENE DOSAGE; LANDFILL; LIMIT OF DETECTION; METHANOTROPH; METHYLOCALDUM; METHYLOCOCCUS; METHYLOSOMA; MICROBIAL DIVERSITY; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; OXIDATION; QUANTITATIVE ANALYSIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOIL; WATER CONTENT;

METHYLOCALDUM; METHYLOCOCCACEAE; METHYLOCOCCUS; METHYLOCYSTACEAE; METHYLOCYSTIS;

CH4 OXIDATION ACTIVITY; LANDFILL AGE; LANDFILL COVER SOIL; METHANOTROPHS; MICROBIAL COMMUNITY;

METHANE; METHYLOCOCCACEAE; OXIDATION-REDUCTION; PROTEOBACTERIA; SOIL; SOIL MICROBIOLOGY; WASTE DISPOSAL FACILITIES;

EID: 84881669030     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12263     Document Type: Article

References (41)

1. Amaral, J.A. and Knowles, R. (1995) Growth of methanotrophs in methane and oxygen counter gradients. FEMS Microbiol Lett 126, 215-220.
2. Baker, G.C., Smith, J.J. and Cowan, D.A. (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
3. Bao, S.D. (2000) Soil and Agricultural Chemistry Analysis. Beijing: China Agricultural Press.
4. Barlaz, M.A., Green, R.B., Chanton, J.P., Goldsmith, C.D. and Hater, G.R. (2004) Evaluation of a biologically active cover for mitigation of landfill gas emissions. Environ Sci Technol 38, 4891-4899.
5. Bogner, J.E., Spokas, K.A., Burton, E.A., Sweeney, R. and Corona, V. (1995) Landfills as atmospheric methane sources and sinks. Chemosphere 31, 4119-4130.
6. Bohn, S., Brunke, P., Gebert, J. and Jager, J. (2011) Improving the aeration of critical fine-grained landfill top cover material by vegetation to increase the microbial methane oxidation dfficiency. Waste Manage 31, 854-863.
7. 4 at different temperatures in landfill cover soils. FEMS Microbiol Ecol 48, 305-312.
8. Bourne, D.G., McDonald, I.R. and Murrell, J.C. (2001) Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils. Appl Environ Microbiol 67, 3802-3809.
9. Bowman, J.P., Sly, L.I., Nichols, P.D. and Hayward, A.C. (1993) Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs. Int J Syst Bacteriol 43, 735-753.
10. Cébron, A., Bodrossy, L., Stralis-Pavese, N., Singer, A.C., Thompson, I.P., Prosser, J.I. and Murrell, J.C. (2007) Nutrient amendments in soil DNA stable isotope probing experiments reduce the observed methanotroph diversity. Appl Environ Microbiol 73, 798-807.
11. Costello, A.M. and Lidstrom, M.E. (1999) Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl Environ Microbiol 65, 5066-5074.
12. Dedysh, S.N., Liesack, W., Khmelenina, V.N., Suzina, N.E., Trotsenko, Y.A., Semrau, J.D., Bares, A.M., Panikov, N.S. et al. (2000) Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. Int J Syst Evol Microbiol 50, 955-969.
13. Ding, W., Cai, Z. and Tsuruta, H. (2005) Plant species effects on methane emissions from freshwater marshes. Atmos Environ 39, 3199-3207.
14. Dunfield, P.F., Yuryev, A., Senin, P., Smirnova, A.V., Stott, M.B., Hou, S.B., Ly, B., Saw, J.H. et al. (2007) Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450, 879-882.
15. Einola, J.M., Kettunen, R.H. and Rintala, J.A. (2007) Responses of methane oxidation to temperature and water content in cover soil of a boreal landfill. Soil Biol Biochem 39, 1156-1164.
16. Ettwig, K.F., Margaret, K., Butler, M.K., Denis Le Paslier, D.L., Pelletier, E., Mangenot, S., Kuypers, M.M.M., Schreiber, F. et al. (2010) Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 464, 543-550.
17. European Environment Agency (EEA) (2008) Annual European community greenhouse gas inventory 1990-2006 and inventory report 2008. http://www.eea.europa.eu/publications/technical_report_2008_6.
18. Hanson, R.S. and Hanson, T.E. (1996) Methanotrophic bacteria. Microbiol Rev 60, 439-471.
19. He, R., Ruan, A.D. and Shen, D.S. (2007) Effects of methane on the microbial populations and oxidation rates in different landfill cover soil columns. J Environ Sci Health Part A 42, 785-793.
20. He, R., Wooller, M.J., Pohlman, J.W., Catranis, C., Quensen, J., Tiedje, J.M. and Leigh, M.B. (2012a) Identification of functionally active aerobic methanotrophs in sediments from an arctic lake using stable isotope probing. Environ Microbiol 14, 1403-1419.
21. He, R., Wooller, M.J., Pohlman, J.W., Quensen, J., Tiedje, J.M. and Mary Beth Leigh, M.B. (2012b) Diversity of active aerobic methanotrophs along depth profiles of arctic and subarctic lake water column and sediments. ISME J 6, 1937-1948.
22. 4 on presence and activity of the indigenous methanotrophic community in rice field soil. Environ Microbiol 2, 666-679.
23. Henneberger, R., Lu ke, C., Mosberger, L. and Schroth, M.H. (2011) Structure and function of methanotrophic communities in a landfill-cover soil. FEMS Microbiol Ecol 81, 52-65.
24. Holmes, A.J., Costello, A., Lidstrom, M.E. and Murrell, J.C. (1995) Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132, 203-208.
25. Huber-Humer, M., Gebert, J. and Hilger, H. (2008) Biotic systems tomitigate landfill methane emissions. Waste Manage Res 26, 33-46.
26. Iguchi, H., Yurimoto, H. and Sakai, Y. (2010) Soluble and particulate methane monooxygenase gene clusters of the type I methanotroph Methylovulum miyakonense HT12. FEMS Microbiol Lett 312, 71-76.
27. Iguchi, H., Yurimoto, H. and Sakai, Y. (2011) Methylovulum miyakonense gen. nov., sp. nov., a no vel type I methanotroph from a forest soil in Japan. Int J Syst Evol Microbiol 61, 810-815.
28. Intergovernmental Panel on Climate Change (IPCC) (2007) Climate change 2007 - the physical science basis. In Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change ed. Solomon, S., Qin, D., Manning, M., Marquis, M., Averyt, K., Tignor, M.M.B., Miller, H.L. and Chen, Z.. pp. 385-432. Cambridge: Cambridge University Press.
29. Islam, T., Jensen, S., Reigstad, L.J., Larsen, O. and Birkeland, N.K. (2008) Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc Natl Acad Sci USA 105, 300-304.
30. Knittel, K. and Boetius, A. (2009) Anaerobic oxidation of methane: progress with an unknown process. Annu Rev Microbiol 63, 311-334.
31. McDonald, I.R., Bodrossy, L., Chen, Y. and Murrell, J.C. (2008) Molecular ecology techniques for the study of aerobic methanotrophs. Appl Environ Microbiol 74, 1305-1315.
32. Nauhaus, K., Treude, T., Boetius, A. and Krüger, M. (2005) Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I and ANME-II communities. Environ Microbiol 7, 98-106.
33. Nielsen, A.K., Gerdes, K. and Murrell, J.C. (1997) Copper-dependent reciprocal transcriptional regulation of methane monooxygenase genes in Methylococcus capsulatus and Methylosinus trichosporium. Mol Microbiol 25, 399-409.
34. Pohland, F.G. and Harper, S.A. (1986) Critical Review and Summary of Leachate and Gas Production from Landfills. Washington, DC: USEPA Office of Solid Waste (OSW).
35. Pol, A., Heijmans, K., Harhangi, H.R., Tedesco, D., Jetten, M.S.M. and Op den Camp, H.J.M. (2007) Methanotrophy below pH1 by a new Verrucomicrobia species. Nature 450, 874-878.
36. Scheutz, C., Kjeldsen, P., Bogner, J.E., Visscher, A.D., Gebert, J., Hilger, H.A., Huber-Humer, M. and Spokas, K. (2009) Microbial methane oxidation processes and technologies for mitigation of landfill gas emissions. Waste Manag Res 27, 409-455.
37. Semrau, J.D., DiSpirito, A.A. and Yoon, S. (2010) Methanotrophs and copper. FEMS Micobiol Rev 34, 496-531.
38. United State Environmental Protection Agency (USEPA) (2007) Inventory of U.S. greenhouse gas emissions and sinks: 1990-2005. USEPA #430-R-07-002 http://epa.gov/climatechange/emissions/usinventoryreport.html.
39. Vorobev, A.V., Baani, M., Doronina, N.V., Brady, A.L., Liesack, W., Dunfield, P.F. and Dedysh, S.N. (2011) Methyloferula stellate gen. nov., sp. nov., and acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase. Int J Syst Evol Microbiol 61, 2456-2463.
40. Wang, J., Xia, F.F., Bai, Y., Fang, C.R., Shen, D.S. and He, R. (2011) Methane oxidation in landfill waste biocover soil: kinetics and sensitivity to ambient conditions. Waste Manage 31, 864-870.
41. Wise, M.G., McArthur, J.V. and Shimkets, L.J. (1999) Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis. Appl Environ Microbiol 65, 4887-4897.