Evolution of sympatric species: A case study of the coral reef fish genus Pomacanthus (Pomacanthidae)

Journal of Biogeography

Volumn 40, Issue 9, 2013, Pages 1676-1687

  Hodge, Jennifer R ^a   Read, Charmaine I ^a   Bellwood, David R ^a   van Herwerden, Lynne ^a  

^a JAMES COOK UNIVERSITY   (Australia)

Author keywords

Age range correlation; Allopatry; Coral reefs; Divergence dating; Fossil calibration; Marine biogeography; Pan tropical; Peripheral budding; Speciation mode; Sympatry

Indexed keywords

AGE-RELATED DIFFERENCE; ALLOPATRY; CORAL REEF; DIVERGENCE; FOSSIL RECORD; GENETIC ANALYSIS; NICHE OVERLAP; PERCIFORM; PHYLOGENETICS; RANGE SIZE; RELATEDNESS; SPECIATION (BIOLOGY); SPECIES RICHNESS; SYMPATRY; TROPICAL REGION;

ANTHOZOA; POMACANTHIDAE; POMACANTHUS;

EID: 84881614408     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/jbi.12124     Document Type: Article

References (67)

1. Allen, G.R., Steene, R. & Allen, M. (1998) A guide to angelfishes and butterflyfishes. Odyssey Publishing/Tropical Reef Research, Perth, Australia.
2. Bannikov, A.F. & Tyler, J.C. (1995) Phylogenetic revision of the fish families Luvaridae and Kushlukiidae (Acanthuroidei), with a new genus and two new species of Eocene luvarids. Smithsonian Contributions to Paleobiology, 81, 1-45.
3. Barraclough, T.G. & Nee, S. (2001) Phylogenetics and speciation. Trends in Ecology and Evolution, 16, 391-399.
4. Barraclough, T.G. & Vogler, A.P. (2000) Detecting the geographical pattern of speciation from species-level phylogenies. The American Naturalist, 155, 419-434.
5. Bellwood, D.R. & Wainwright, P.C. (2002) The history and biogeography of fishes on coral reefs. Coral reef fishes: dynamics and diversity in a complex system (ed. by P.F. Sale), pp. 5-32. Academic Press, New York.
6. Bellwood, D.R., van Herwerden, L. & Konow, N. (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Molecular Phylogenetics and Evolution, 33, 140-155.
7. Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N. & van Herwerden, L. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23, 335-349.
8. Bernardi, G., Bucciarelli, G., Costagliola, D., Robertson, D.R. & Heiser, J.B. (2004) Evolution of coral reef fish Thalassoma spp. (Labridae). 1. Molecular phylogeny and biogeography. Marine Biology, 144, 369-375.
9. Bernardi, G., Alva-Campbell, Y.R., Gasparini, J.L. & Floeter, S.R. (2008) Molecular ecology, speciation, and evolution of the reef fish genus Anisotremus. Molecular Phylogenetics and Evolution, 48, 929-935.
10. Bird, C.E., Fernandez-Silva, I., Skillings, D.J. & Toonen, R.J. (2012) Sympatric speciation in the post "modern synthesis" era of evolutionary biology. Evolutionary Biology, 39, 158-180.
11. Brandley, M.C., Wang, Y., Guo, X., Montes de Oca, A.N., Fería-Ortíz, M., Hikida, T. & Ota, H. (2011) Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards. Systematic Biology, 60, 3-15.
12. Budd, A.F. & Pandolfi, J.M. (2010) Evolutionary novelty is concentrated at the edge of coral species distributions. Science, 328, 1558-1561.
13. Butlin, R.K., Galindo, J. & Grahame, J.W. (2008) Sympatric, parapatric or allopatric: the most important way to classify speciation? Philosophical Transactions of the Royal Society B: Biological Sciences, 363, 2997-3007.
14. Choat, J.H., Klanten, O.S., van Herwerden, L., Robertson, D.R. & Clements, K.D. (2012) Patterns and processes in the evolutionary history of parrotfishes (Family Labridae). Biological Journal of the Linnean Society, 107, 529-557.
15. Coates, A.G. & Obando, J.A. (1996) The geological evolution of the Central American isthmus. Evolution and environment in tropical America (ed. by J.B.C. Jackson, A.F. Budd and A.G. Coates), pp. 21-56. University of Chicago Press, Chicago.
16. Coates, A.G., Jackson, J.B.C., Collins, L.S., Cronin, T.M., Dowsett, H.J., Bybell, L.M., Jung, P. & Obando, J.A. (1992) Closure of the Isthmus of Panama: the near-shore marine record of Costa Rica and western Panama. Geological Society of America Bulletin, 104, 814-828.
17. Cowman, P.F. & Bellwood, D.R. (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24, 2543-2562.
18. Cowman, P.F. & Bellwood, D.R. (2012) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. Journal of Biogeography, 40, 209-224.
19. Coyne, J.A. & Orr, H.A. (2004) Speciation. Sinauer Associates, Sunderland, MA.
20. Dalebout, M.L., Steel, D. & Baker, C.S. (2008) Phylogeny of the beaked whale genus Mesoplodon (Ziphiidae: Cetacea) revealed by nuclear introns: implications for the evolution of male tusks. Systematic Biology, 57, 857-875.
21. Dietz, E.J. (1983) Permutation tests for association between two distance matrices. Systematic Zoology, 32, 21-26.
22. Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
23. Felsenstein, J. (1985) Phylogenies and the comparative method. The American Naturalist, 125, 1-15.
24. Fitzpatrick, B.M. & Turelli, M. (2006) The geography of mammalian speciation: mixed signals from phylogenies and range maps. Evolution, 60, 601-615.
25. Fitzpatrick, B.M., Fordyce, J.A. & Gavrilets, S. (2008) What, if anything, is sympatric speciation? Journal of Evolutionary Biology, 21, 1452-1459.
26. Fitzpatrick, B.M., Fordyce, J.A. & Gavrilets, S. (2009) Pattern, process and geographic modes of speciation. Journal of Evolutionary Biology, 22, 2342-2347.
27. Frey, M.A. (2010) The relative importance of geography and ecology in species diversification: evidence from a tropical marine intertidal snail (Nerita). Journal of Biogeography, 37, 1515-1528.
28. Gernhard, T. (2008) The conditioned reconstructed process. Journal of Theoretical Biology, 253, 769-778.
29. GRASS Development Team (2011) Geographic Resources Analysis Support System (GRASS). Open Source Geospatial Foundation Project, Beaverton, OR. Available at: http://grass.osgeo.org/.
30. Hodge, J.R., Read, C.I., van Herwerden, L. & Bellwood, D.R. (2012) The role of peripheral endemism in species diversification: evidence from the coral reef fish genus Anampses (Family: Labridae). Molecular Phylogenetics and Evolution, 62, 653-663.
31. Hug, L.A. & Roger, A.J. (2007) The impact of fossils and taxon sampling on ancient molecular dating analyses. Molecular Biology and Evolution, 24, 1889-1897.
32. Hurvich, C.M. & Tsai, C.-L. (1989) Regression and time series model selection in small samples. Biometrika, 76, 297-307.
33. IUCN (2011) IUCN red list of threatened species. Version 2011.2. International Union for Conservation of Nature, Gland, Switzerland. Available at: http://www.iucnredlist.org/.
34. Kirkendale, L.A. & Meyer, C.P. (2004) Phylogeography of the Patelloida profunda group (Gastropoda: Lottidae): diversification in a dispersal-driven marine system. Molecular Ecology, 13, 2749-2762.
35. Klanten, S.O., van Herwerden, L., Choat, J.H. & Blair, D. (2004) Patterns of lineage diversification in the genus Naso (Acanthuridae). Molecular Phylogenetics and Evolution, 32, 221-235.
36. Krug, P.J. (2011) Patterns of speciation in marine gastropods: a review of the phylogenetic evidence for localized radiations in the sea. American Malacological Bulletin, 29, 169-186.
37. Lessios, H.A. (2008) The great American schism: divergence of marine organisms after the rise of the Central American Isthmus. Annual Review of Ecology, Evolution, and Systematics, 39, 63-91.
38. Losos, J.B. & Glor, R.E. (2003) Phylogenetic comparative methods and the geography of speciation. Trends in Ecology and Evolution, 18, 220-227.
39. Malay, M.C.D. & Paulay, G. (2010) Peripatric speciation drives diversification and distributional pattern of reef hermit crabs (Decapoda: Diogenidae: Calcinus). Evolution, 64, 634-662.
40. Mallet, J., Meyer, A., Nosil, P. & Feder, J.L. (2009) Space, sympatry and speciation. Journal of Evolutionary Biology, 22, 2332-2341.
41. McCafferty, S., Bermingham, E., Quenouille, B., Planes, S., Hoelzer, G. & Asoh, K. (2002) Historical biogeography and molecular systematics of the Indo-Pacific genus Dascyllus (Teleostei: Pomacentridae). Molecular Ecology, 11, 1377-1392.
42. Miller, M.A., Holder, M.T., Vos, R., Midford, P.E., Liebowitz, T., Chan, L., Hoover, P. & Warnow, T. (2010) The CIPRES Science Gateway V. 3.1. Available at: http://www.phylo.org/sub_sections/portal/.
43. Milne, R.I. (2009) Effects of taxon sampling on molecular dating for within-genus divergence events, when deep fossils are used for calibration. Journal of Systematics and Evolution, 47, 383-401.
44. Near, T.J., Eytan, R.I., Dornburg, A., Kuhn, K.L., Moore, J.A., Davis, M.P., Wainwright, P.C., Friedman, M. & Smith, W.L. (2012) Resolution of ray-finned fish phylogeny and timing of diversification. Proceedings of the National Academy of Sciences USA, 109, 13698-13703.
45. Pandolfi, J.M. (1992) Successive isolation rather than evolutionary centres for the origination of Indo-Pacific reef corals. Journal of Biogeography, 19, 593-609.
46. Phillimore, A.B., Orme, C.D.L., Thomas, G.H., Blackburn, T.M., Bennett, P.M., Gaston, K.J. & Owens, I.P.F. (2008) Sympatric speciation in birds is rare: insights from range data and simulations. The American Naturalist, 171, 646-657.
47. Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256.
48. Puebla, O. (2009) Ecological speciation in marine v. freshwater fishes. Journal of Fish Biology, 75, 960-996.
49. Quenouille, B., Hubert, N., Bermingham, E. & Planes, S. (2011) Speciation in tropical seas: allopatry followed by range change. Molecular Phylogenetics and Evolution, 58, 564-552.
50. R Development Core Team (2011) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: http://www.r-project.org/.
51. Rambaut, A. & Drummond, A.J. (2007) Tracer v1.4. Available at: http://beast.bio.ed.ac.uk/Tracer.
52. Read, C.I., Bellwood, D.R. & van Herwerden, L. (2006) Ancient origins of Indo-Pacific coral reef fish biodiversity: a case study of the leopard wrasses (Labridae: Macropharyngodon). Molecular Phylogenetics and Evolution, 38, 808-819.
53. Renema, W., Bellwood, D.R., Braga, J.C., Bromfield, K., Hall, R., Johnson, K.G., Lunt, P., Meyer, C.P., McMonagle, L.B., Morley, R.J., O'Dea, A., Todd, J.A., Wesselingh, F.P., Wilson, M.E.J. & Pandolfi, J.M. (2008) Hopping hotspots: global shifts in marine biodiversity. Science, 321, 654-657.
54. Rocha, L.A. & Bowen, B.W. (2008) Speciation in coral-reef fishes. Journal of Fish Biology, 72, 1101-1121.
55. Rocha, L.A., Lindeman, K.C., Rocha, C.R. & Lessios, H.A. (2008) Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae). Molecular Phylogenetics and Evolution, 48, 918-928.
56. Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
57. Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
58. Santini, F., Miglietta, M.P. & Faucci, A. (2012) Speciation: where are we now? An introduction to a special issue on speciation. Evolutionary Biology, 39, 141-147.
59. Steininger, F.F. & Rögl, F. (1984) Paleogeography and palinspastic reconstructions of the Neogene of the Mediterranean and Paratethys. The geological evolution of the eastern Mediterranean (ed. by J.E. Dixon and A.H.F. Robertson), pp. 659-668. Blackwell, Oxford.
60. Stobutzki, I.C. & Bellwood, D.R. (1997) Sustained swimming abilities of the late pelagic stages of coral reef fishes. Marine Ecology Progress Series, 149, 35-41.
61. Sugiura, N. (1978) Further analysis of the data by Akaike's information criterion and the finite corrections. Communications in Statistics - Theory and Methods, 7, 13-26.
62. Swofford, D.L. (2003) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer Associates, Sunderland, MA.
63. Thresher, R.E. & Brothers, E.B. (1985) Reproductive ecology and biogeography of Indo-West Pacific angelfishes (Pisces: Pomacanthidae). Evolution, 39, 878-887.
64. Wilgenbusch, J.C., Warren, D.L. & Swofford, D.L. (2004) AWTY: a system for graphical exploration of MCMC convergence in Bayesian inference. Available at: http://ceb.csit.fsu.edu/awty/.
65. Williams, S.T. & Reid, D.G. (2004) Speciation and diversity on tropical rocky shores: a global phylogeny of snails of the genus Echinolittorina. Evolution, 58, 2227-2251.
66. Winters, K.L., van Herwerden, L., Choat, J.H. & Robertson, D.R. (2010) Phylogeography of the Indo-Pacific parrotfish Scarus psittacus: isolation generates distinctive peripheral populations in two oceans. Marine Biology, 157, 1679-1691.
67. Zwickl, D.J. (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under maximum likelihood criterion. PhD Thesis, University of Texas, Austin, TX.