-
1
-
-
77957231785
-
-
P. Csermely, R. Palotai, R. Nussinov, Trends Biochem. Sci. 2010, 35, 539-546.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 539-546
-
-
Csermely, P.1
Palotai, R.2
Nussinov, R.3
-
2
-
-
15444375819
-
-
W. B. Peters, S. P. Edmonton, J. W. Shriver, Biochemistry 2005, 44, 4794-4804.
-
(2005)
Biochemistry
, vol.44
, pp. 4794-4804
-
-
Peters, W.B.1
Edmonton, S.P.2
Shriver, J.W.3
-
3
-
-
49449091883
-
-
D. U. Ferreiro, I. E. Sanchez, G. D. Gay, Proc. Natl. Acad. Sci. USA 2008, 105, 10797-10802.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 10797-10802
-
-
Ferreiro, D.U.1
Sanchez, I.E.2
Gay, G.D.3
-
5
-
-
33845504065
-
-
S. V. Kuznetsov, S. Sugimura, P. Vivas, D. M. Crothers, A. Ansari, Proc. Natl. Acad. Sci. USA 2006, 103, 18515-18520;
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 18515-18520
-
-
Kuznetsov, S.V.1
Sugimura, S.2
Vivas, P.3
Crothers, D.M.4
Ansari, A.5
-
6
-
-
44949085459
-
-
P. Vivas, S. V. Kuznetsov, A. Ansari, J. Phys. Chem. B 2008, 112, 5997-6007.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 5997-6007
-
-
Vivas, P.1
Kuznetsov, S.V.2
Ansari, A.3
-
7
-
-
84859714414
-
-
P. Vivas, Y. Velmurugu, S. V. Kuznetsov, P. A. Rice, A. Ansari, J. Mol. Biol. 2012, 418, 300-315.
-
(2012)
J. Mol. Biol.
, vol.418
, pp. 300-315
-
-
Vivas, P.1
Velmurugu, Y.2
Kuznetsov, S.V.3
Rice, P.A.4
Ansari, A.5
-
8
-
-
0029943025
-
-
K. M. Parkhurst, M. Brenowitz, L. J. Parkhurst, Biochemistry 1996, 35, 7459-7465;
-
(1996)
Biochemistry
, vol.35
, pp. 7459-7465
-
-
Parkhurst, K.M.1
Brenowitz, M.2
Parkhurst, L.J.3
-
9
-
-
0033603388
-
-
K. M. Parkhurst, R. M. Richards, M. Brenowitz, L. J. Parkhurst, J. Mol. Biol. 1999, 289, 1327-1341;
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1327-1341
-
-
Parkhurst, K.M.1
Richards, R.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
10
-
-
0035839638
-
-
R. M. Powell, K. M. Parkhurst, M. Brenowitz, L. J. Parkhurst, J. Biol. Chem. 2001, 276, 29782-29791;
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29782-29791
-
-
Powell, R.M.1
Parkhurst, K.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
11
-
-
64349107263
-
-
R. F. Delgadillo, J. E. Whittington, L. K. Parkhurst, L. J. Parkhurst, Biochemistry 2009, 48, 1801-1809.
-
(2009)
Biochemistry
, vol.48
, pp. 1801-1809
-
-
Delgadillo, R.F.1
Whittington, J.E.2
Parkhurst, L.K.3
Parkhurst, L.J.4
-
12
-
-
0346220020
-
-
D. A. Hiller, J. M. Fogg, A. M. Martin, J. M. Beechem, N. O. Reich, J. J. Perona, Biochemistry 2003, 42, 14375-14385.
-
(2003)
Biochemistry
, vol.42
, pp. 14375-14385
-
-
Hiller, D.A.1
Fogg, J.M.2
Martin, A.M.3
Beechem, J.M.4
Reich, N.O.5
Perona, J.J.6
-
13
-
-
0032514675
-
-
J. F. Leger, J. Robert, L. Bourdieu, D. Chatenay, J. F. Marko, Proc. Natl. Acad. Sci. USA 1998, 95, 12295-12299.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12295-12299
-
-
Leger, J.F.1
Robert, J.2
Bourdieu, L.3
Chatenay, D.4
Marko, J.F.5
-
15
-
-
0034435652
-
-
L. Jen-Jacobson, L. E. Engler, L. A. Jacobson, Structure 2000, 8, 1015-1023;
-
(2000)
Structure
, vol.8
, pp. 1015-1023
-
-
Jen-Jacobson, L.1
Engler, L.E.2
Jacobson, L.A.3
-
17
-
-
57749209893
-
-
M. S. Luijsterburg, M. F. White, R. van Driel, R. T. Dame, Crit. Rev. Biochem. Mol. Biol. 2008, 43, 393-418.
-
(2008)
Crit. Rev. Biochem. Mol. Biol.
, vol.43
, pp. 393-418
-
-
Luijsterburg, M.S.1
White, M.F.2
van Driel, R.3
Dame, R.T.4
-
19
-
-
0028839434
-
-
S. P. Edmondson, L. S. Qiu, J. W. Shriver, Biochemistry 1995, 34, 13289-13304;
-
(1995)
Biochemistry
, vol.34
, pp. 13289-13304
-
-
Edmondson, S.P.1
Qiu, L.S.2
Shriver, J.W.3
-
20
-
-
0032510217
-
-
H. Robinson, Y. G. Gao, B. S. McCrary, S. P. Edmondson, J. W. Shriver, A. H. Wang, Nature 1998, 392, 202-205;
-
(1998)
Nature
, vol.392
, pp. 202-205
-
-
Robinson, H.1
Gao, Y.G.2
McCrary, B.S.3
Edmondson, S.P.4
Shriver, J.W.5
Wang, A.H.6
-
21
-
-
0344609869
-
-
P. I. W. de Bakker, P. H. Hunenberger, J. A. McCammon, J. Mol. Biol. 1999, 285, 1811-1830;
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1811-1830
-
-
de Bakker, P.I.W.1
Hunenberger, P.H.2
McCammon, J.A.3
-
22
-
-
12344293866
-
-
T.-P. Ko, H.-M. Chu, C.-Y. Chen, C.-C. Chou, A. H.-J. Wang, Acta Crystallogr. Sect. D. Biol. Crystallogr. 2004, 60, 1381-1387;
-
(2004)
Acta Crystallogr. Sect. D. Biol. Crystallogr.
, vol.60
, pp. 1381-1387
-
-
Ko, T.-P.1
Chu, H.-M.2
Chen, C.-Y.3
Chou, C.-C.4
Wang, A.H.-J.5
-
23
-
-
4644342209
-
-
W. B. Peters, S. P. Edmondson, J. W. Shriver, J. Mol. Biol. 2004, 343, 339-360;
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 339-360
-
-
Peters, W.B.1
Edmondson, S.P.2
Shriver, J.W.3
-
24
-
-
26644450246
-
-
M. A. Kahsai, E. Martin, S. P. Edmondson, J. W. Shriver, Biochemistry 2005, 44, 13500-13509;
-
(2005)
Biochemistry
, vol.44
, pp. 13500-13509
-
-
Kahsai, M.A.1
Martin, E.2
Edmondson, S.P.3
Shriver, J.W.4
-
25
-
-
78650098369
-
-
U. D. Priyakumar, G. Harika, G. Suresh, J. Phys. Chem. B 2010, 114, 16548-16557.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 16548-16557
-
-
Priyakumar, U.D.1
Harika, G.2
Suresh, G.3
-
26
-
-
13744259490
-
-
C. Y. Chen, T. P. Ko, T. W. Lin, C. C. Chou, C. J. Chen, A. H. J. Wang, Nucleic Acids Res. 2005, 33, 430-438.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 430-438
-
-
Chen, C.Y.1
Ko, T.P.2
Lin, T.W.3
Chou, C.C.4
Chen, C.J.5
Wang, A.H.J.6
-
27
-
-
84862168795
-
-
J. Spiriti, H. Kamberaj, A. De Graff, M. F. Thorpe, A. van der Vaart, J. Chem. Theory Comput. 2012, 8, 2145-2156;
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2145-2156
-
-
Spiriti, J.1
Kamberaj, H.2
De Graff, A.3
Thorpe, M.F.4
van der Vaart, A.5
-
30
-
-
0000087970
-
-
R. W. W. Hooft, B. P. Vaneijck, J. Kroon, J. Chem. Phys. 1992, 97, 6690-6694;
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 6690-6694
-
-
Hooft, R.W.W.1
Vaneijck, B.P.2
Kroon, J.3
-
32
-
-
80855148257
-
-
J. Spiriti, H. Kamberaj, A. van der Vaart, Int. J. Quantum Chem. 2012, 112, 33-43.
-
(2012)
Int. J. Quantum Chem.
, vol.112
, pp. 33-43
-
-
Spiriti, J.1
Kamberaj, H.2
van der Vaart, A.3
-
34
-
-
0038792211
-
-
M. S. Lee, M. Feig, F. R. Salsbury, Jr., C. L. Brooks III., J. Comput. Chem. 2003, 24, 1348-1356.
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1348-1356
-
-
Lee, M.S.1
Feig, M.2
Salsbury Jr, F.R.3
Brooks III, C.L.4
-
35
-
-
0346971105
-
-
M. Feig, A. Onufriev, M. S. Lee, W. Im, D. A. Case, C. L. Brooks III., J. Comp. Chem. 2004, 25, 265-284.
-
(2004)
J. Comp. Chem.
, vol.25
, pp. 265-284
-
-
Feig, M.1
Onufriev, A.2
Lee, M.S.3
Im, W.4
Case, D.A.5
Brooks III, C.L.6
-
36
-
-
0004016501
-
-
W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, M. L. Klein, J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
37
-
-
67650500988
-
-
B. R. Brooks, C. L. Brooks III., A. D. MacKerell, Jr., L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus, J. Comput. Chem. 2009, 30, 1545-1614.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks III, C.L.2
MacKerell Jr, A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
38
-
-
34250318638
-
-
A. Pérez, I. Marchán, D. Svozil, J. Sponer, T. E. Cheatham III., C. A. Laughton, M. Orozco, Biophys. J. 2007, 92, 3817-3829.
-
(2007)
Biophys. J.
, vol.92
, pp. 3817-3829
-
-
Pérez, A.1
Marchán, I.2
Svozil, D.3
Sponer, J.4
Cheatham III, T.E.5
Laughton, C.A.6
Orozco, M.7
-
39
-
-
33646940952
-
-
J.-P. Ryckaert, G. Ciccotti, H. J. C. Berendsen, J. Comput. Phys. 1977, 23, 327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
40
-
-
33846823909
-
-
T. Darden, D. York, L. Pedersen, J. Chem. Phys. 1993, 98, 10089-10092.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
43
-
-
33846148305
-
-
K. J. Bowers, R. O. Dror, D. E. Shaw, J. Comput. Phys. 2007, 221, 303-329.
-
(2007)
J. Comput. Phys.
, vol.221
, pp. 303-329
-
-
Bowers, K.J.1
Dror, R.O.2
Shaw, D.E.3
-
45
-
-
79957549084
-
-
A. Tafvizi, L. A. Mirny, A. M. van Oijen, ChemPhysChem 2011, 12, 1481-1489.
-
(2011)
ChemPhysChem
, vol.12
, pp. 1481-1489
-
-
Tafvizi, A.1
Mirny, L.A.2
van Oijen, A.M.3
-
46
-
-
3142657230
-
-
C. G. Kalodimos, N. Biris, A. Bonvin, M. M. Levandoski, M. Guennuegues, R. Boelens, R. Kaptein, Science 2004, 305, 386-389.
-
(2004)
Science
, vol.305
, pp. 386-389
-
-
Kalodimos, C.G.1
Biris, N.2
Bonvin, A.3
Levandoski, M.M.4
Guennuegues, M.5
Boelens, R.6
Kaptein, R.7
-
47
-
-
0037124326
-
-
C. G. Kalodimos, A. Bonvin, R. K. Salinas, R. Wechselberger, R. Boelens, R. Kaptein, EMBO J. 2002, 21, 2866-2876.
-
(2002)
EMBO J.
, vol.21
, pp. 2866-2876
-
-
Kalodimos, C.G.1
Bonvin, A.2
Salinas, R.K.3
Wechselberger, R.4
Boelens, R.5
Kaptein, R.6
|