Genetic characteristics of blaNDM-1-positive plasmid in Citrobacter freundii isolate separated from a clinical infectious patient

Journal of Medical Microbiology

Volumn 62, Issue , 2013, Pages 1332-1337

  Du, Xiao Xing ^a   Wang, Jian Feng ^a   Fu, Ying ^a   Zhao, Feng ^b   Chen, Yan ^a   Wang, Hai Ping ^a   Yu, Yun Song ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMIKACIN; AZTREONAM; BETA LACTAMASE; CARBAPENEM DERIVATIVE; CEFEPIME; CEFOTAXIME; CEFTAZIDIME; CIPROFLOXACIN; COLISTIN; GENTAMICIN; IMIPENEM; MEROPENEM; MINOCYCLINE; NITROFURANTOIN; NUCLEASE S1; PIPERACILLIN PLUS TAZOBACTAM; SULPERAZON; SULTAMICILLIN; TIGECYCLINE; ANTIINFECTIVE AGENT; BETA LACTAMASE NDM 1; BETA-LACTAMASE NDM-1;

ACINETOBACTER; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATION; CHINA; CITROBACTER FREUNDII; CONTROLLED STUDY; ELECTROTRANSFORMATION; ENTEROBACTERIACEAE; GENETIC TRAIT; HIGH THROUGHPUT SEQUENCING; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; TRANSPOSON; URINARY TRACT INFECTION; BACTERIUM CONJUGATION; ENTEROBACTERIACEAE INFECTION; ENZYMOLOGY; GENETIC VARIABILITY; GENETICS; HORIZONTAL GENE TRANSFER; HUMAN; ISOLATION AND PURIFICATION; MALE; METABOLISM; MICROBIOLOGY; MIDDLE AGED;

ACINETOBACTER; ANTI-BACTERIAL AGENTS; BASE SEQUENCE; BETA-LACTAMASES; CITROBACTER FREUNDII; CONJUGATION, GENETIC; DNA TRANSPOSABLE ELEMENTS; ENTEROBACTERIACEAE INFECTIONS; GENE TRANSFER, HORIZONTAL; GENES, BACTERIAL; GENETIC VARIATION; HUMANS; MALE; MIDDLE AGED; PLASMIDS; URINARY TRACT INFECTIONS;

EID: 84881602073     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.057091-0     Document Type: Article

References (28)

1. Bae, I. K., Jang, S. J., Kim, J., Jeong, S. H., Cho, B. & Lee, K. (2011). Interspecies dissemination of the bla gene encoding PER-1 extendedspectrum b-lactamase. Antimicrob Agents Chemother 55, 1305-1307.
2. Bonnin, R. A., Poirel, L., Naas, T., Pirs, M., Seme, K., Schrenzel, J. & Nordmann, P. (2012). Dissemination of New Delhi metallo-blactamase-1-producing Acinetobacter baumannii in Europe. Clin Microbiol Infect 18, E362-E365.
3. Carattoli, A., Bertini, A., Villa, L., Falbo, V., Hopkins, K. L. & Threlfall, E. J. (2005). Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 63, 219-228.
4. Chen, Y., Zhou, Z., Jiang, Y. & Yu, Y. (2011). Emergence of NDM-1-producing Acinetobacter baumannii in China. J Antimicrob Chemother 66, 1255-1259.
5. CLSI (2012). Performance Standards for Antimicrobial Susceptibility Testing; 22nd Informational Supplement M100-S22. Wayne, PA: Clinical and Laboratory Standards Institute.
6. Dolejska, M., Villa, L., Poirel, L., Nordmann, P. & Carattoli, A. (2013). Complete sequencing of an IncHI1 plasmid encoding the carbapenemase NDM-1, the ArmA 16S RNA methylase and a resistance-nodulation-cell division/multidrug efflux pump. J Antimicrob Chemother 68, 34-39.
7. NDM-1 in non-baumannii Acinetobacter spp. in China. J Antimicrob Chemother 67, 2114-2122.
8. Gupta, N., Limbago, B. M., Patel, J. B. & Kallen, A. J. (2011). Carbapenem-resistant Enterobacteriaceae: epidemiology and prevention. Clin Infect Dis 53, 60-67.
9. Ho, P. L., Lo, W. U., Yeung, M. K., Lin, C. H., Chow, K. H., Ang, I., Tong, A. H., Bao, J. Y., Lok, S. & Lo, J. Y. (2011). Complete sequencing of pNDM-HK encoding NDM-1 carbapenemase froma multidrug-resistant Escherichia coli strain isolated in Hong Kong. PLoS ONE 6, e17989.
10. NDM-1 in Enterobacteriaceae isolates with epidemiological links to multiple geographical areas in China. Emerg Microbes Infect 1, e39.
11. NDM-1 gene and T4SS in clinical isolates of Acinetobacter lwoffii. Antimicrob Agents Chemother 56, 1698-1702.
12. Johnson, T. J., Bielak, E. M., Fortini, D., Hansen, L. H., Hasman, H., Debroy, C., Nolan, L. K. & Carattoli, A. (2012). Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. Plasmid 68, 43-50.
13. Kumarasamy, K. K., Toleman, M. A., Walsh, T. R., Bagaria, J., Butt, F., Balakrishnan, R., Chaudhary, U., Doumith, M., Giske, C. G. & other authors (2010). Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis 10, 597-602.
14. Lee, K., Yum, J. H., Yong, D., Lee, H. M., Kim, H. D., Docquier, J. D., Rossolini, G. M. & Chong, Y. (2005). Novel acquired metallo-b-lactamase gene, blaSIM-1, in a class 1 integron from Acinetobacter baumannii clinical isolates from Korea. Antimicrob Agents Chemother 49, 4485-4491.
15. Lee, M. F., Peng, C. F., Hsu, H. J. & Chen, Y. H. (2008). Molecular characterisation of the metallo-b-lactamase genes in imipenemresistant Gram-negative bacteria from a university hospital in southern Taiwan. Int J Antimicrob Agents 32, 475-480.
16. Literak, I., Dolejska, M., Janoszowska, D., Hrusakova, J., Meissner, W., Rzyska, H., Bzoma, S. & Cizek, A. (2010). Antibiotic-resistant Escherichia coli bacteria, including strains with genes encoding the extended-spectrum b-lactamase and QnrS, in waterbirds on the Baltic Sea Coast of Poland. Appl Environ Microbiol 76, 8126-8134.
17. Moellering, R. C., Jr (2010). NDM-1-a cause for worldwide concern. N Engl J Med 363, 2377-2379.
18. NDM-1 in an Acinetobacter baumannii strain isolated in Germany in 2007. J Antimicrob Chemother 66, 1998-2001.
19. NDM-1-positive Enterobacteriaceae. Antimicrob Agents Chemother 55, 5403-5407.
20. Poirel, L., Bonnin, R. A. & Nordmann, P. (2011b). Analysis of the resistome of a multidrug-resistant NDM-1-producing Escherichia coli strain by high-throughput genome sequencing. Antimicrob Agents Chemother 55, 4224-4229.
21. NDM-1-positive IncA/C plasmid from Escherichia coli ST38 isolate suggests a possible origin from plant pathogens. PLoS ONE 6, e25334.
22. Solé, M., Pitart, C., Roca, I., Fà brega, A., Salvador, P., Muñoz, L., Oliveira, I., Gascó n, J., Marco, F. & Vila, J. (2011). First description of an Escherichia coli strain producing NDM-1 carbapenemase in Spain. Antimicrob Agents Chemother 55, 4402-4404.
23. Struelens, M. J., Monnet, D. L., Magiorakos, A. P., Santos O'Connor, F., Giesecke, J. & European NDM-1 Survey Participants (2010). New Delhi metallo-b-lactamase 1-producing Enterobacteriaceae: emergence and response in Europe. Euro Surveill 15, 19716.
24. Walsh, T. R., Weeks, J., Livermore, D. M. & Toleman, M. A. (2011). Dissemination of NDM-1 positive bacteria in the New Delhi environment and its implications for human health: an environmental point prevalence study. Lancet Infect Dis 11, 355-362.
25. NDM-1 in Taiwan. J Chin Med Assoc 73, 596-598.
26. NDM-1, and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India. Antimicrob Agents Chemother 53, 5046-5054.
27. Zerbino, D. R. & Birney, E. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18, 821-829.
28. Zhang, R., Zhou, H. W., Cai, J. C., Zhang, J., Chen, G. X., Nasu, M. & Xie, X. Y. (2011). Serotypes and extended-spectrum b-lactamase types of clinical isolates of Shigella spp. from the Zhejiang province of China. Diagn Microbiol Infect Dis 69, 98-104.