-
1
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
28044443881
-
Integration and evolution of the cichlid mandible: the molecular basis of alternate feeding strategies
-
Albertson RC, Streelman JT, Kocher TD, Yelick PC. 2005. Integration and evolution of the cichlid mandible: the molecular basis of alternate feeding strategies. Proc Natl Acad Sci USA 102:16287-16292.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 16287-16292
-
-
Albertson, R.C.1
Streelman, J.T.2
Kocher, T.D.3
Yelick, P.C.4
-
3
-
-
77149155006
-
Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes
-
Albertson RC, Yan YL, Titus TA, et al. 2010. Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes. BMC Evol Biol 10:4.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 4
-
-
Albertson, R.C.1
Yan, Y.L.2
Titus, T.A.3
-
4
-
-
30744434126
-
Characterization of two new zebrafish members of the hedgehog family: atypical expression of a zebrafish indian hedgehog gene in skeletal elements of both endochondral and dermal origins
-
Avaron F, Hoffman L, Guay D, Akimenko MA. 2006. Characterization of two new zebrafish members of the hedgehog family: atypical expression of a zebrafish indian hedgehog gene in skeletal elements of both endochondral and dermal origins. Dev Dyn 235:478-489.
-
(2006)
Dev Dyn
, vol.235
, pp. 478-489
-
-
Avaron, F.1
Hoffman, L.2
Guay, D.3
Akimenko, M.A.4
-
5
-
-
74549118236
-
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
-
Chan YF, Marks ME, Jones FC, et al. 2010. Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science 327:302-305.
-
(2010)
Science
, vol.327
, pp. 302-305
-
-
Chan, Y.F.1
Marks, M.E.2
Jones, F.C.3
-
6
-
-
26444603772
-
Two rounds of whole genome duplication in the ancestral vertebrate
-
Dehal P, Boore JL. 2005. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol 3:e314.
-
(2005)
PLoS Biol
, vol.3
-
-
Dehal, P.1
Boore, J.L.2
-
7
-
-
78149485806
-
Distribution of COL8A2 and COL8A1 gene variants in Caucasian primary open angle glaucoma patients with thin central corneal thickness
-
Desronvil T, Logan-Wyatt D, Abdrabou W, et al. 2010. Distribution of COL8A2 and COL8A1 gene variants in Caucasian primary open angle glaucoma patients with thin central corneal thickness. Mol Vis 16:2185-2191.
-
(2010)
Mol Vis
, vol.16
, pp. 2185-2191
-
-
Desronvil, T.1
Logan-Wyatt, D.2
Abdrabou, W.3
-
8
-
-
77950854168
-
Changes in Hox genes' structure and function during the evolution of the squamate body plan
-
Di-Poi N, Montoya-Burgos JI, Miller H, et al. 2010. Changes in Hox genes' structure and function during the evolution of the squamate body plan. Nature 464:99-103.
-
(2010)
Nature
, vol.464
, pp. 99-103
-
-
Di-Poi, N.1
Montoya-Burgos, J.I.2
Miller, H.3
-
9
-
-
79851473886
-
A high-resolution anatomical atlas of the transcriptome in the mouse embryo
-
Diez-Roux G, Banfi S, Sultan M, et al. 2011. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol 9:e1000582.
-
(2011)
PLoS Biol
, vol.9
-
-
Diez-Roux, G.1
Banfi, S.2
Sultan, M.3
-
11
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
12
-
-
78049461842
-
Two families of Xenopus tropicalis skeletal genes display well-conserved expression patterns with mammals in spite of their highly divergent regulatory regions
-
Espinoza J, Sanchez M, Sanchez A, et al. 2010. Two families of Xenopus tropicalis skeletal genes display well-conserved expression patterns with mammals in spite of their highly divergent regulatory regions. Evol Dev 12:541-551.
-
(2010)
Evol Dev
, vol.12
, pp. 541-551
-
-
Espinoza, J.1
Sanchez, M.2
Sanchez, A.3
-
13
-
-
0034788522
-
Growth cartilage calcification and formation of bone trabeculae are late and dissociated events in the endochondral ossification of Rana catesbeiana
-
Felisbino SL, Carvalho HF. 2001. Growth cartilage calcification and formation of bone trabeculae are late and dissociated events in the endochondral ossification of Rana catesbeiana. Cell Tissue Res 306:319-323.
-
(2001)
Cell Tissue Res
, vol.306
, pp. 319-323
-
-
Felisbino, S.L.1
Carvalho, H.F.2
-
14
-
-
63849091245
-
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
-
Fullwood MJ, Wei CL, Liu ET, Ruan Y. 2009. Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. Genome Res 19:521-532.
-
(2009)
Genome Res
, vol.19
, pp. 521-532
-
-
Fullwood, M.J.1
Wei, C.L.2
Liu, E.T.3
Ruan, Y.4
-
15
-
-
57149117327
-
Essential role for the alpha 1 chain of type VIII collagen in zebrafish notochord formation
-
Gansner JM, Gitlin JD. 2008. Essential role for the alpha 1 chain of type VIII collagen in zebrafish notochord formation. Dev Dyn 237:3715-3726.
-
(2008)
Dev Dyn
, vol.237
, pp. 3715-3726
-
-
Gansner, J.M.1
Gitlin, J.D.2
-
16
-
-
0001662144
-
Macromolecular aggregation states in relation to mineralization: the collagen-hidroxyapatite system as studied in vitro
-
Glimcher MJ, Hodge AJ, Schmitt OF. 1957. Macromolecular aggregation states in relation to mineralization: the collagen-hidroxyapatite system as studied in vitro. Proc Natl Acad Sci USA 43:860-867.
-
(1957)
Proc Natl Acad Sci USA
, vol.43
, pp. 860-867
-
-
Glimcher, M.J.1
Hodge, A.J.2
Schmitt, O.F.3
-
17
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
19
-
-
77951884076
-
Genome-wide analysis of alternative splicing evolution among Mus subspecies
-
Harr B, Turner LM. 2010. Genome-wide analysis of alternative splicing evolution among Mus subspecies. Mol Ecol 19:228-239.
-
(2010)
Mol Ecol
, vol.19
, pp. 228-239
-
-
Harr, B.1
Turner, L.M.2
-
20
-
-
34948867738
-
The collagen family members as cell adhesion proteins
-
Heino J. 2007. The collagen family members as cell adhesion proteins. BioEssays 29:1001-1010.
-
(2007)
BioEssays
, vol.29
, pp. 1001-1010
-
-
Heino, J.1
-
21
-
-
23444448102
-
Targeted disruption of Col8a1 and Col8a2 genes in mice leads to anterior segment abnormalities in the eye
-
Hopfer U, Fukai N, Hopfer H, et al. 2005. Targeted disruption of Col8a1 and Col8a2 genes in mice leads to anterior segment abnormalities in the eye. FASEB J 19:1232-1244.
-
(2005)
FASEB J
, vol.19
, pp. 1232-1244
-
-
Hopfer, U.1
Fukai, N.2
Hopfer, H.3
-
23
-
-
0022531298
-
Type VIII collagen from bovine Descemet's membrane: structural characterization of a triple-helical domain
-
Kapoor R, Bornstein P, Sage EH. 1986. Type VIII collagen from bovine Descemet's membrane: structural characterization of a triple-helical domain. Biochemistry 25:3930-3937.
-
(1986)
Biochemistry
, vol.25
, pp. 3930-3937
-
-
Kapoor, R.1
Bornstein, P.2
Sage, E.H.3
-
24
-
-
77951120000
-
Alternative splicing and evolution: diversification, exon definition and function
-
Keren H, Lev-Maor G, Ast G. 2010. Alternative splicing and evolution: diversification, exon definition and function. Nat Rev Genet 11:345-355.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 345-355
-
-
Keren, H.1
Lev-Maor, G.2
Ast, G.3
-
25
-
-
0033014044
-
Regulation of chondrocyte differentiation by Cbfa1
-
Kim IS, Otto F, Zabel B, Mundlos S. 1999. Regulation of chondrocyte differentiation by Cbfa1. Mech Dev 80:159-170.
-
(1999)
Mech Dev
, vol.80
, pp. 159-170
-
-
Kim, I.S.1
Otto, F.2
Zabel, B.3
Mundlos, S.4
-
26
-
-
0010098815
-
Abnormal compartmentalization of cartilage matrix components in mice lacking collagen X: implications for function
-
Kwan KM, Pang MK, Zhou S, et al. 1997. Abnormal compartmentalization of cartilage matrix components in mice lacking collagen X: implications for function. J Cell Biol 136:459-471.
-
(1997)
J Cell Biol
, vol.136
, pp. 459-471
-
-
Kwan, K.M.1
Pang, M.K.2
Zhou, S.3
-
27
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
28
-
-
59149094064
-
Restriction of retinoic acid activity by Cyp26b1 is required for proper timing and patterning of osteogenesis during zebrafish development
-
Laue K, Janicke M, Plaster N, Sonntag C, Hammerschmidt M. 2008. Restriction of retinoic acid activity by Cyp26b1 is required for proper timing and patterning of osteogenesis during zebrafish development. Development 135:3775-3787.
-
(2008)
Development
, vol.135
, pp. 3775-3787
-
-
Laue, K.1
Janicke, M.2
Plaster, N.3
Sonntag, C.4
Hammerschmidt, M.5
-
29
-
-
59649109509
-
Tracking gene expression during zebrafish osteoblast differentiation
-
Li N, Felber K, Elks P, Croucher P, Roehl HH. 2009. Tracking gene expression during zebrafish osteoblast differentiation. Dev Dyn 238:459-466.
-
(2009)
Dev Dyn
, vol.238
, pp. 459-466
-
-
Li, N.1
Felber, K.2
Elks, P.3
Croucher, P.4
Roehl, H.H.5
-
30
-
-
80052180803
-
Cloning and spatiotemporal expression of RIC-8 in Xenopus embryogenesis
-
Maldonado-Agurto R, Toro G, Fuentealba J, et al. 2011. Cloning and spatiotemporal expression of RIC-8 in Xenopus embryogenesis. Gene Expr Patterns 11:401-408.
-
(2011)
Gene Expr Patterns
, vol.11
, pp. 401-408
-
-
Maldonado-Agurto, R.1
Toro, G.2
Fuentealba, J.3
-
31
-
-
79955983802
-
Generation and characterization of Col10a1-mcherry reporter mice
-
Maye P, Fu Y, Butler DL, et al. 2011. Generation and characterization of Col10a1-mcherry reporter mice. Genesis 49:410-418.
-
(2011)
Genesis
, vol.49
, pp. 410-418
-
-
Maye, P.1
Fu, Y.2
Butler, D.L.3
-
32
-
-
53349167512
-
Skeletogenesis in Xenopus tropicalis: characteristic bone development in an anuran amphibian
-
Miura S, Hanaoka K, Togashi S. 2008. Skeletogenesis in Xenopus tropicalis: characteristic bone development in an anuran amphibian. Bone 43:901-909.
-
(2008)
Bone
, vol.43
, pp. 901-909
-
-
Miura, S.1
Hanaoka, K.2
Togashi, S.3
-
33
-
-
13744254806
-
Expression profile of Xenopus banded hedgehog, a homolog of mouse Indian hedgehog, is related to the late development of endochondral ossification in Xenopus laevis
-
Moriishi T, Shibata Y, Tsukazaki T, Yamaguchi A. 2005. Expression profile of Xenopus banded hedgehog, a homolog of mouse Indian hedgehog, is related to the late development of endochondral ossification in Xenopus laevis. Biochem Biophys Res Commun 328:867-873.
-
(2005)
Biochem Biophys Res Commun
, vol.328
, pp. 867-873
-
-
Moriishi, T.1
Shibata, Y.2
Tsukazaki, T.3
Yamaguchi, A.4
-
34
-
-
0025887138
-
The alpha 2(VIII) collagen gene. A novel member of the short chain collagen family located on the human chromosome 1
-
Muragaki Y, Jacenko O, Apte S, et al. 1991. The alpha 2(VIII) collagen gene. A novel member of the short chain collagen family located on the human chromosome 1. J Biol Chem 266:7721-7727.
-
(1991)
J Biol Chem
, vol.266
, pp. 7721-7727
-
-
Muragaki, Y.1
Jacenko, O.2
Apte, S.3
-
35
-
-
20844463584
-
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
-
Ng P, Wei CL, Sung WK, et al. 2005. Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat Methods 2:105-111.
-
(2005)
Nat Methods
, vol.2
, pp. 105-111
-
-
Ng, P.1
Wei, C.L.2
Sung, W.K.3
-
38
-
-
68849117424
-
Identification of differentially expressed genes between osteoblasts and osteocytes
-
Paic F, Igwe JC, Nori R, et al. 2009. Identification of differentially expressed genes between osteoblasts and osteocytes. Bone 45:682-692.
-
(2009)
Bone
, vol.45
, pp. 682-692
-
-
Paic, F.1
Igwe, J.C.2
Nori, R.3
-
39
-
-
0037212317
-
Vascular collagens: spotlight on the role of type VIII collagen in atherogenesis
-
Plenz GA, Deng MC, Robenek H, Volker W. 2003. Vascular collagens: spotlight on the role of type VIII collagen in atherogenesis. Atherosclerosis 166:1-11.
-
(2003)
Atherosclerosis
, vol.166
, pp. 1-11
-
-
Plenz, G.A.1
Deng, M.C.2
Robenek, H.3
Volker, W.4
-
40
-
-
84860109324
-
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F, Teslenko M, van der Mark P, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61:539-542.
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
van der Mark, P.3
-
41
-
-
34249782269
-
Development and evolution of chordate cartilage
-
Rychel AL, Swalla BJ. 2007. Development and evolution of chordate cartilage. J Exp Zool B Mol Dev Evol 308:325-335.
-
(2007)
J Exp Zool B Mol Dev Evol
, vol.308
, pp. 325-335
-
-
Rychel, A.L.1
Swalla, B.J.2
-
42
-
-
0035572115
-
Upregulation of collagen VIII following porcine coronary artery angioplasty is related to smooth muscle cell migration not angiogenesis
-
Sinha S, Kielty CM, Heagerty AM, Canfield AE, Shuttleworth CA. 2001. Upregulation of collagen VIII following porcine coronary artery angioplasty is related to smooth muscle cell migration not angiogenesis. Int J Exp Pathol 82:295-302.
-
(2001)
Int J Exp Pathol
, vol.82
, pp. 295-302
-
-
Sinha, S.1
Kielty, C.M.2
Heagerty, A.M.3
Canfield, A.E.4
Shuttleworth, C.A.5
-
43
-
-
2442649171
-
Expression and supramolecular assembly of recombinant alpha1(viii) and alpha2(viii) collagen homotrimers
-
Stephan S, Sherratt MJ, Hodson N, Shuttleworth CA, Kielty CM. 2004. Expression and supramolecular assembly of recombinant alpha1(viii) and alpha2(viii) collagen homotrimers. J Biol Chem 279:21469-21477.
-
(2004)
J Biol Chem
, vol.279
, pp. 21469-21477
-
-
Stephan, S.1
Sherratt, M.J.2
Hodson, N.3
Shuttleworth, C.A.4
Kielty, C.M.5
-
44
-
-
79951483773
-
Embryological evidence identifies wing digits in birds as digits 1, 2 and 3
-
Tamura K, Nomura N, Seki R, Yonei-Tamura S, Yokoyama H. 2011. Embryological evidence identifies wing digits in birds as digits 1, 2 and 3. Science 331:753-757.
-
(2011)
Science
, vol.331
, pp. 753-757
-
-
Tamura, K.1
Nomura, N.2
Seki, R.3
Yonei-Tamura, S.4
Yokoyama, H.5
-
45
-
-
20144388984
-
Structure of palmitoylated BET3: insights into TRAPP complex assembly and membrane localization
-
Turnbull AP, Kummel D, Prinz B, et al. 2005. Structure of palmitoylated BET3: insights into TRAPP complex assembly and membrane localization. EMBO J 24:875-884.
-
(2005)
EMBO J
, vol.24
, pp. 875-884
-
-
Turnbull, A.P.1
Kummel, D.2
Prinz, B.3
-
46
-
-
33745666523
-
Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny
-
Wada H, Okuyama M, Satoh N, Zhang S. 2006. Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny. Evol Dev 8:370-377.
-
(2006)
Evol Dev
, vol.8
, pp. 370-377
-
-
Wada, H.1
Okuyama, M.2
Satoh, N.3
Zhang, S.4
-
47
-
-
56549087988
-
Neutralism and selectionism: a network-based reconciliation
-
Wagner A. 2008. Neutralism and selectionism: a network-based reconciliation. Nat Rev Genet 9:965-974.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 965-974
-
-
Wagner, A.1
-
48
-
-
34548758543
-
Splicing in disease: disruption of the splicing code and the decoding machinery
-
Wang GS, Cooper TA. 2007. Splicing in disease: disruption of the splicing code and the decoding machinery. Nat Rev Genet 8:749-761.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 749-761
-
-
Wang, G.S.1
Cooper, T.A.2
-
49
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
50
-
-
0027282559
-
A type X collagen mutation causes Schmid metaphyseal chondrodysplasia
-
Warman ML, Abbott M, Apte SS, et al. 1993. A type X collagen mutation causes Schmid metaphyseal chondrodysplasia. Nat Genet 5:79-82.
-
(1993)
Nat Genet
, vol.5
, pp. 79-82
-
-
Warman, M.L.1
Abbott, M.2
Apte, S.S.3
-
51
-
-
0025911342
-
The alpha 1 (VIII) collagen gene is homologous to the alpha 1 (X) collagen gene and contains a large exon encoding the entire triple helical and carboxyl-terminal non-triple helical domains of the alpha 1 (VIII) polypeptide
-
Yamaguchi N, Mayne R, Ninomiya Y. 1991. The alpha 1 (VIII) collagen gene is homologous to the alpha 1 (X) collagen gene and contains a large exon encoding the entire triple helical and carboxyl-terminal non-triple helical domains of the alpha 1 (VIII) polypeptide. J Biol Chem 266:4508-4513.
-
(1991)
J Biol Chem
, vol.266
, pp. 4508-4513
-
-
Yamaguchi, N.1
Mayne, R.2
Ninomiya, Y.3
-
52
-
-
33750940805
-
Hagfish and lancelet fibrillar collagens reveal that type II collagen-based cartilage evolved in stem vertebrates
-
Zhang G, Cohn MJ. 2006. Hagfish and lancelet fibrillar collagens reveal that type II collagen-based cartilage evolved in stem vertebrates. Proc Natl Acad Sci USA 103:16829-16833.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 16829-16833
-
-
Zhang, G.1
Cohn, M.J.2
-
53
-
-
53449101955
-
Genome duplication and the origin of the vertebrate skeleton
-
Zhang G, Cohn MJ. 2008. Genome duplication and the origin of the vertebrate skeleton. Curr Opin Genet Dev 18:387-393.
-
(2008)
Curr Opin Genet Dev
, vol.18
, pp. 387-393
-
-
Zhang, G.1
Cohn, M.J.2
|