Decoding the structure of granular and porous materials from speckled phase contrast X-ray images

Optics Express

Volumn 21, Issue 16, 2013, Pages 19153-19162

  Carnibella, R P ^a   Kitchen, M J ^a   Fouras, A ^a  

^a MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTERIZED TOMOGRAPHY; DECODING; IMAGING TECHNIQUES; INVERSE PROBLEMS; X RAY ANALYSIS;

GLASS MICROSPHERES; INVERSE METHODS; PHASE CONTRAST X-RAY IMAGING; PHASE CONTRASTS; STRUCTURAL INFORMATION; SYNTHETIC DATA; TEMPORAL RESOLUTION; X-RAY IMAGE;

POROUS MATERIALS;

EID: 84881503826     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.21.019153     Document Type: Article

References (41)

1. D. P. Schmidt and M. L. Corradini, "The internal flow of diesel fuel injector nozzles: A review," Int. J. Engine Res. 2(1), 1-22 (2001).
2. F. J. Leij, T. A. Ghezzehei, and D. Or, "Modeling the dynamics of the soil pore-size distribution," Soil Tillage Res. 64(1-2), 61-78 (2002).
3. D. E. Carney, C. E. Bredenberg, H. J. Schiller, A. L. Picone, U. G. McCann II, L. A. Gatto, G. Bailey, M. Fillinger, and G. F. Nieman, "The mechanism of lung volume change during mechanical ventilation," Am. J. Resp. Crit. Care 160(5), 1697-1702 (1999).
4. A. J. Hajari, D. A. Yablonskiy, A. L. Sukstanskii, J. D. Quirk, M. S. Conradi, and J. C. Woods, "Morphometric changes in the human pulmonary acinus during inflation," J. Appl. Physiol. 112(6), 937-943 (2012).
5. R. R. Mercer, M. L. Russell, and J. D. Crapo, "Alveolar septal structure in different species," J. Appl. Physiol. 77(3), 1060-1066 (1994).
6. J. Knust, M. Ochs, H. J. G. Gundersen, and J. R. Nyengaard, "Stereological estimates of alveolar number and size and capillary length and surface area in mice lungs," Anat. Rec. (Hoboken) 292(1), 113-122 (2009).
7. A. Fouras, B. J. Allison, M. J. Kitchen, S. Dubsky, J. Nguyen, K. Hourigan, K. K. W. Siu, R. A. Lewis, M. J. Wallace, and S. B. Hooper, "Altered lung motion is a sensitive indicator of regional lung disease," Ann. Biomed. Eng. 40(5), 1160-1169 (2012).
8. C. N. Davies, Aerosol Science (Academic Press, 1966).
9. C. E. Mandt, Y. Kuga, L. Tsang, and A. Ishimaru, "Microwave propagation and scattering in a dense distribution of non-tenuous spheres: Experiment and theory," Waves Random Media 2(3), 225-234 (1992).
10. J. R. Fletcher, G. P. Swift, D. C. Dai, J. A. Levitt, and J. M. Chamberlain, "Propagation of terahertz radiation through random structures: An alternative theoretical approach and experimental validation," J. Appl. Phys. 101(1), 013102 (2007).
11. C. M. Sayers and R. L. Smith, "The propagation of ultrasound in porous media," Ultrasonics 20(5), 201-205 (1982).
12. The ImPACT Group, Comparative Specifications: 128 to 320 Slice CT Scanner Technical Specifications (Centre for Evidence-based Purchasing, 2009).
13. R. Mokso, P. Cloetens, E. Maire, W. Ludwig, and J.-Y. Buffière, "Nanoscale zoom tomography with hard x rays using Kirkpatrick-Baez optics," Appl. Phys. Lett. 90(14), 144104 (2007).
14. M. Langer, A. Pacureanu, H. Suhonen, Q. Grimal, P. Cloetens, and F. Peyrin, "X-ray phase nanotomography resolves the 3D human bone ultrastructure," PLoS ONE 7(8), e35691 (2012).
15. R. Mokso, F. Marone, D. Haberthür, J. C. Schittny, G. Mikuljan, A. Isenegger, and M. Stampanoni, "Following dynamic processes by Xray tomographic microscopy with subsecond temporal resolution," in AIP Conference Proceedings (2011), Vol. 1365, pp. 38-41.
16. J. Moosmann, A. Ershov, V. Altapova, T. Baumbach, M. S. Prasad, C. LaBonne, X. Xiao, J. Kashef, and R. Hofmann, "X-ray phase-contrast in vivo microtomography probes new aspects of Xenopus gastrulation," Nature 497(7449), 374-377 (2013).
17. S. Fain, M. L. Schiebler, D. G. McCormack, and G. Parraga, "Imaging of lung function using hyperpolarized helium-3 magnetic resonance imaging: Review of current and emerging translational methods and applications," J. Magn. Reson. Imaging 32(6), 1398-1408 (2010).
18. O. Glatter and O. Kratky, Small Angle X-ray Scattering (Academic Press, 1982).
19. U. Bonse and M. Hart, "Small angle X-ray scattering by spherical particles of polystyrene and polyvinyltoluene," Z. Phys. 189(2), 151-162 (1966).
20. R. Cerbino, L. Peverini, M. A. C. Potenza, A. Robert, P. Bosecke, and M. Giglio, "X-ray-scattering information obtained from near-field speckle," Nat. Phys. 4(3), 238-243 (2008).
21. R. P. Carnibella, M. J. Kitchen, and A. Fouras, "Determining particle size distributions from a single projection image," Opt. Express 20(14), 15962-15968 (2012).
22. J. H. Holland, Adaptation in Natural and Artificial Systems: An Introductory Analysis with Applications to Biology, Control, and Artificial Intelligence (MIT Press, 1992).
23. L. Randy, Haupt, Practical Genetic Algorithms, 2nd ed. (Wiley Interscience, 2004).
24. A. Snigirev, I. Snigireva, V. Kohn, S. Kuznetsov, and I. Schelokov, "On the possibilities of xray phase contrast microimaging by coherent highenergy synchrotron radiation," Rev. Sci. Instrum. 66(12), 5486-5492 (1995).
25. S. W. Wilkins, T. E. Gureyev, D. Gao, A. Pogany, and A. W. Stevenson, "Phase-contrast imaging using polychromatic hard X-rays," Nature 384(6607), 335-338 (1996).
26. M. J. Kitchen, D. Paganin, R. A. Lewis, N. Yagi, K. Uesugi, and S. T. Mudie, "On the origin of speckle in x-ray phase contrast images of lung tissue," Phys. Med. Biol. 49(18), 4335-4348 (2004).
27. S. Torquato, T. M. Truskett, and P. G. Debenedetti, "Is random close packing of spheres well defined?" Phys. Rev. Lett. 84(10), 2064-2067 (2000).
28. S. B. Yuste and A. Santos, "Radial distribution function for hard spheres," Phys. Rev. A 43(10), 5418-5423 (1991).
29. C. James, Spall, "Stochastic optimization," in Handbook of Computational Statistics: Concepts and Methods, Wolfgang Härdle, James E. Gentle, and Yuichi Mori, eds. (Springer, 2004), pp. 169-197.
30. V. Alan, Oppenheim, Discrete-time Signal Processing, 2nd ed. (Prentice Hall, 1999).
31. A. W. Klein, R. F. Becker, and M. R. Bryson, "A method for estimating the distribution of alveolar sizes from histological lung sections," Trans. Am. Microsc. Soc. 91(2), 195-208 (1972).
32. L. Knudsen, E. R. Weibel, H. J. G. Gundersen, F. V. Weinstein, and M. Ochs, "Assessment of air space size characteristics by intercept (chord) measurement: An accurate and efficient stereological approach," J. Appl. Physiol. 108(2), 412-421 (2010).
33. C. Kloss, C. Goniva, A. Hager, S. Amberger, and S. Pirker, "Models, algorithms and validation for opensource DEM and CFD-DEM," Prog. Comput. Fluid Dy. 12, 140-152 (2012).
34. A. Pogany, D. Gao, and S. W. Wilkins, "Contrast and resolution in imaging with a microfocus x-ray source," Rev. Sci. Instrum. 68(7), 2774-2782 (1997).
35. M. Nieto-Vesperinas, Scattering And Diffraction in Physical Optics, 2nd ed. (World Scientific, 2006).
36. L. Eshelman and J. Schaffer, "Real-coded genetic algorithms and interval-schemata.," in Foundations of Genetic Algorithms, D. Whitley, ed. (Morgan Kaufmann., 1993), pp. 187-202.
37. S. Goto, K. Takeshita, Y. Suzuki, H. Ohashi, Y. Asano, H. Kimura, T. Matsushita, N. Yagi, M. Isshiki, H. Yamazaki, Y. Yoneda, K. Umetani, and T. Ishikawa, "Construction and commissioning of a 215-m-long beamline at SPring-8," Nucl. Instrum. Meth. A 467-468, 682-685 (2001).
38. M. J. Berger, J. H. Hubbell, S. M. Seltzer, J. Chang, J. S. Coursey, R. Sukumar, D. S. Zucker, and K. Olsen, "XCOM: Photon Cross Sections Database," http://www.nist.gov/pml/data/xcom.index.cfm.
39. M. J. Kitchen, R. A. Lewis, M. J. Morgan, M. J. Wallace, M. L. Siew, K. K. W. Siu, A. Habib, A. Fouras, N. Yagi, K. Uesugi, and S. B. Hooper, "Dynamic measures of regional lung air volume using phase contrast x-ray imaging," Phys. Med. Biol. 53(21), 6065-6077 (2008).
40. R. A. Jamison, J. A. Armitage, J. Carberry, M. J. Kitchen, S. B. Hooper, and A. Fouras, "Functional imaging to understand biomechanics: A critical tool for the study of biology, pathology and the development of pharmacological solutions," Curr. Pharm. Biotechnol. 13(11), 2128-2140 (2012).
41. J. Thurgood, S. Hooper, M. Siew, M. Wallace, S. Dubsky, M. Kitchen, R. A. Jamison, R. Carnibella, and A. Fouras, "Functional lung imaging during HFV in preterm rabbits," PLoS ONE 7(10), e48122 (2012).