Optimizing Burrows-Wheeler Transform-based sequence alignment on multicore architectures

Proceedings - 13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing, CCGrid 2013

Volumn , Issue , 2013, Pages 377-384

  Zhang, Jing ^a   Lin, Heshan ^a   Balaji, Pavan ^b   Feng, Wu Chun ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

Bioinformatics; Burrows Wheeler Transform; Data locality; FM index; Multicore; Short read mapping

Indexed keywords

BURROWS WHEELER TRANSFORM; DATA LOCALITY; FM-INDEX; MULTI CORE; SHORT-READ MAPPINGS;

ALIGNMENT; BACKWARD WAVE TUBES; BIOINFORMATICS; BUFFER STORAGE; GRID COMPUTING; SOFTWARE ARCHITECTURE; TOOLS;

OPTIMIZATION;

EID: 84881286487     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGrid.2013.67     Document Type: Conference Paper

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