-
1
-
-
0034867975
-
The protein trinity: Linking function and disorder
-
Dunker, A. K. and Obradovic, Z. (2001) The protein trinity: Linking function and disorder Nat. Biotechnol. 19, 805-806
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 805-806
-
-
Dunker, A.K.1
Obradovic, Z.2
-
2
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa, P. (2002) Intrinsically unstructured proteins Trends Biochem. Sci. 27, 527-533
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
3
-
-
79958741408
-
Intrinsically disordered proteins from A to Z
-
Uversky, V. N. (2011) Intrinsically disordered proteins from A to Z Int. J. Biochem. Cell Biol. 43, 1090-1103
-
(2011)
Int. J. Biochem. Cell Biol.
, vol.43
, pp. 1090-1103
-
-
Uversky, V.N.1
-
4
-
-
39749187284
-
Small integrin-binding ligand N-linked glycoproteins (SIBLINGs): Multifunctional proteins in cancer
-
Bellahcène, A., Castronovo, V., Ogbureke, K. U. E., Fisher, L. W., and Fedarko, N. S. (2008) Small integrin-binding ligand N-linked glycoproteins (SIBLINGs): Multifunctional proteins in cancer Nat. Rev. 8, 212-226
-
(2008)
Nat. Rev.
, vol.8
, pp. 212-226
-
-
Bellahceìne, A.1
Castronovo, V.2
Ogbureke, K.U.E.3
Fisher, L.W.4
Fedarko, N.S.5
-
5
-
-
77951627939
-
The meandering of disordered proteins in conformational space
-
Konrat, R. (2010) The meandering of disordered proteins in conformational space Structure 18, 416-149
-
(2010)
Structure
, vol.18
, pp. 416-149
-
-
Konrat, R.1
-
7
-
-
84866403844
-
Mapping the Potential Energy Landscape of Intrinsically Disordered Proteins at Amino Acid Resolution
-
Ozenne, V., Schneider, R., Yao, M., Huang, J.-r., Salmon, L., Zweckstetter, M., Jensen, M. R., and Blackledge, M. (2012) Mapping the Potential Energy Landscape of Intrinsically Disordered Proteins at Amino Acid Resolution J. Am. Chem. Soc. 134, 15138-15148
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 15138-15148
-
-
Ozenne, V.1
Schneider, R.2
Yao, M.3
Huang, J.-R.4
Salmon, L.5
Zweckstetter, M.6
Jensen, M.R.7
Blackledge, M.8
-
8
-
-
74949131609
-
Ensemble Calculations of Unstructured Proteins Constrained by RDC and PRE Data: A Case Study of Urea-Denatured Ubiquitin
-
Huang, J.-r. and Grzesiek, S. (2010) Ensemble Calculations of Unstructured Proteins Constrained by RDC and PRE Data: A Case Study of Urea-Denatured Ubiquitin J. Am. Chem. Soc. 132, 694-705
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 694-705
-
-
Huang, J.-R.1
Grzesiek, S.2
-
9
-
-
77951631601
-
Structure/Function Implications in a Dynamic Complex of the Intrinsically Disordered Sic1 with Cdc4 Subunit of an SCF Ubiquitin Ligase
-
Mittag, T., Marsh, J., Grishaev, A., Orlicky, S., Lin, H., Sicheri, F., Tyers, M., and Forman-Kay, J. D. (2010) Structure/Function Implications in a Dynamic Complex of the Intrinsically Disordered Sic1 with Cdc4 Subunit of an SCF Ubiquitin Ligase Structure 18, 494-506
-
(2010)
Structure
, vol.18
, pp. 494-506
-
-
Mittag, T.1
Marsh, J.2
Grishaev, A.3
Orlicky, S.4
Lin, H.5
Sicheri, F.6
Tyers, M.7
Forman-Kay, J.D.8
-
10
-
-
67650684936
-
Structure and Disorder in an Unfolded State under Nondenaturating Conditions from Ensemble Models Consistent with a Large Number of Experimental Restraints
-
Marsh, J. A. and Forman-Kay, J. D. (2009) Structure and Disorder in an Unfolded State under Nondenaturating Conditions from Ensemble Models Consistent with a Large Number of Experimental Restraints J. Mol. Biol. 391, 359-374
-
(2009)
J. Mol. Biol.
, vol.391
, pp. 359-374
-
-
Marsh, J.A.1
Forman-Kay, J.D.2
-
11
-
-
34250815165
-
Characterization of molecular recognition features, MoRFs, and their binding partners
-
Vacic, V., Oldfield, C. J., Mohan, A., Radivojac, P., Cortese, M. S., Uversky, V. N., and Dunker, A. K. (2007) Characterization of molecular recognition features, MoRFs, and their binding partners J. Proteome Res. 6, 2351-2366
-
(2007)
J. Proteome Res.
, vol.6
, pp. 2351-2366
-
-
Vacic, V.1
Oldfield, C.J.2
Mohan, A.3
Radivojac, P.4
Cortese, M.S.5
Uversky, V.N.6
Dunker, A.K.7
-
12
-
-
2142757231
-
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
-
Fuxreiter, M., Simon, I., Friedrich, P., and Tompa, P. (2004) Preformed structural elements feature in partner recognition by intrinsically unstructured proteins J. Mol. Biol. 338, 1015-1026
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 1015-1026
-
-
Fuxreiter, M.1
Simon, I.2
Friedrich, P.3
Tompa, P.4
-
13
-
-
20444414545
-
Linear motifs: Evolutionary interaction switches
-
Neduva, V. and Russell, R. B. (2005) Linear motifs: Evolutionary interaction switches FEBS Lett. 579, 3342-3345
-
(2005)
FEBS Lett.
, vol.579
, pp. 3342-3345
-
-
Neduva, V.1
Russell, R.B.2
-
14
-
-
84877896151
-
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding
-
Hsu, W. L., Oldfield, C. J., Xue, B., Meng, J., Huang, F., Romero, P., Uversky, V. N., and Dunker, A. K. (2013) Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding Protein Sci. 22, 258-273
-
(2013)
Protein Sci.
, vol.22
, pp. 258-273
-
-
Hsu, W.L.1
Oldfield, C.J.2
Xue, B.3
Meng, J.4
Huang, F.5
Romero, P.6
Uversky, V.N.7
Dunker, A.K.8
-
15
-
-
84879177976
-
Describing intrinsically disordered proteins at atomistic resolution by NMR
-
Jensen, M. R., Ruigrok, R. W. H., and Blackledge, M. (2013) Describing intrinsically disordered proteins at atomistic resolution by NMR Curr. Opin. Struct. Biol. doi: 10.1016/j.sbi.2013.1002.1007
-
(2013)
Curr. Opin. Struct. Biol.
-
-
Jensen, M.R.1
Ruigrok, R.W.H.2
Blackledge, M.3
-
16
-
-
79960005608
-
The Metastasis-Associated Extracellular Matrix Protein Osteopontin Forms Transient Structure in Ligand Interaction Sites
-
Platzer, G., Schedbauer, A., Chemeli, A., Ozdowy, P., Coudevylle, N., Auer, R., Kontaxis, G., Hartl, M., Miles, A. J., Wallace, B. A., Glaser, O., Bister, K., and Konrat, R. (2011) The Metastasis-Associated Extracellular Matrix Protein Osteopontin Forms Transient Structure in Ligand Interaction Sites Biochemistry 50, 6113-6124
-
(2011)
Biochemistry
, vol.50
, pp. 6113-6124
-
-
Platzer, G.1
Schedbauer, A.2
Chemeli, A.3
Ozdowy, P.4
Coudevylle, N.5
Auer, R.6
Kontaxis, G.7
Hartl, M.8
Miles, A.J.9
Wallace, B.A.10
Glaser, O.11
Bister, K.12
Konrat, R.13
-
17
-
-
0004108577
-
-
Prentice Hall, Upper Saddle River, NJ.
-
Holde, K. E. v., Johnson, W. C., and Ho, P. S. (1998) Principles of Physical Biochemistry, Prentice Hall, Upper Saddle River, NJ.
-
(1998)
Principles of Physical Biochemistry
-
-
Holde, K.E.V.1
Johnson, W.C.2
Ho, P.S.3
-
18
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky, V. N. (2002) Natively unfolded proteins: A point where biology waits for physics Protein Sci. 11, 739-756
-
(2002)
Protein Sci.
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
19
-
-
77953906592
-
A Combinatorial NMR and EPR Approach for Evaluating the Structural Ensemble of Partially Folded Proteins
-
Rao, J. N., Jao, C. C., Hegde, B. G., Langen, R., and Ulmer, T. S. (2010) A Combinatorial NMR and EPR Approach for Evaluating the Structural Ensemble of Partially Folded Proteins J. Am. Chem. Soc. 132, 8657-8668
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 8657-8668
-
-
Rao, J.N.1
Jao, C.C.2
Hegde, B.G.3
Langen, R.4
Ulmer, T.S.5
-
20
-
-
82655179700
-
Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy
-
Schneider, R., Huang, J.-r., Yao, M., Communie, G., Ozenne, V., Mollica, L., Salmon, L., Jensen, M. R., and Blackledge, M. (2012) Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy Mol. BioSyst. 8, 58-68
-
(2012)
Mol. BioSyst.
, vol.8
, pp. 58-68
-
-
Schneider, R.1
Huang, J.-R.2
Yao, M.3
Communie, G.4
Ozenne, V.5
Mollica, L.6
Salmon, L.7
Jensen, M.R.8
Blackledge, M.9
-
21
-
-
84859764925
-
EPR in Protein Science
-
Drescher, M. (2012) EPR in Protein Science Top. Curr. Chem. 321, 91-120
-
(2012)
Top. Curr. Chem.
, vol.321
, pp. 91-120
-
-
Drescher, M.1
-
22
-
-
34147218123
-
Distance measurements on spin labelled biomacromolecules by pulsed electron paramagnetic resonance
-
Jeschke, G. and Polyhach, Y. (2007) Distance measurements on spin labelled biomacromolecules by pulsed electron paramagnetic resonance Phys. Chem. Chem. Phys. 9, 1895-1910
-
(2007)
Phys. Chem. Chem. Phys.
, vol.9
, pp. 1895-1910
-
-
Jeschke, G.1
Polyhach, Y.2
-
23
-
-
35548943472
-
Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement
-
Clore, G. M., Tang, C., and Iwahara, J. (2007) Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement Curr. Opin. Struct. Biol. 17, 603-616
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 603-616
-
-
Clore, G.M.1
Tang, C.2
Iwahara, J.3
-
24
-
-
33751289801
-
Assessing induced folding of an intrinsically disordered protein by site-directed spin labeling electron paramagnetic resonance spectroscopy
-
Morin, B., Bourhis, J. M., Belle, V., Woudstra, M., Carriere, F., Guigliarelli, B., Fournel, A., and Longhi, S. (2006) Assessing induced folding of an intrinsically disordered protein by site-directed spin labeling electron paramagnetic resonance spectroscopy J. Phys. Chem. B 110, 20596-20608
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 20596-20608
-
-
Morin, B.1
Bourhis, J.M.2
Belle, V.3
Woudstra, M.4
Carriere, F.5
Guigliarelli, B.6
Fournel, A.7
Longhi, S.8
-
26
-
-
3042819802
-
Data Analysis Procedures for Pulse ELDOR Measurements of Broad Distance Distributions
-
Jeschke, G., Panek, G., Godt, A., Bender, A., and Paulsen, H. (2004) Data Analysis Procedures for Pulse ELDOR Measurements of Broad Distance Distributions Appl. Magn. Reson. 26, 223-244
-
(2004)
Appl. Magn. Reson.
, vol.26
, pp. 223-244
-
-
Jeschke, G.1
Panek, G.2
Godt, A.3
Bender, A.4
Paulsen, H.5
-
27
-
-
33947488954
-
Isothermal unfolding of globular proteins in aqueous urea solutions
-
Tanford, C. (1964) Isothermal unfolding of globular proteins in aqueous urea solutions J. Am. Chem. Soc. 86, 2050-2059
-
(1964)
J. Am. Chem. Soc.
, vol.86
, pp. 2050-2059
-
-
Tanford, C.1
-
28
-
-
0036890316
-
Electrostatics in Protein Binding and Function
-
Sinha, N. and Smith-Gill, S. J. (2002) Electrostatics in Protein Binding and Function Curr. Protein Pept. Sci. 3, 601-614
-
(2002)
Curr. Protein Pept. Sci.
, vol.3
, pp. 601-614
-
-
Sinha, N.1
Smith-Gill, S.J.2
-
29
-
-
0032511138
-
Role of Main-chain Electrostatics, Hydrophobic Effect and Side-chain Conformational Entropy in Determining the Secondary Structure of Proteins
-
Avbelj, F. and Fele, L. (1998) Role of Main-chain Electrostatics, Hydrophobic Effect and Side-chain Conformational Entropy in Determining the Secondary Structure of Proteins J. Mol. Biol. 279, 665-684
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 665-684
-
-
Avbelj, F.1
Fele, L.2
-
30
-
-
84876065228
-
Toward an atomistic description of the urea-denatured state of proteins
-
Candotti, M., Esteban-Martin, S., Salvatella, X., and Orozco, M. (2013) Toward an atomistic description of the urea-denatured state of proteins Proc. Natl. Acad. Sci. U.S.A. 110, 5933-5938
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 5933-5938
-
-
Candotti, M.1
Esteban-Martin, S.2
Salvatella, X.3
Orozco, M.4
-
31
-
-
84864754081
-
Coherent Microscopic Picture for Urea-Induced Denaturation of Proteins
-
Yang, Z. X., Xiu, P., Shi, B. Y., Hua, L., and Zhou, R. H. (2012) Coherent Microscopic Picture for Urea-Induced Denaturation of Proteins J. Phys. Chem. B 116, 8856-8862
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 8856-8862
-
-
Yang, Z.X.1
Xiu, P.2
Shi, B.Y.3
Hua, L.4
Zhou, R.H.5
-
33
-
-
84863236979
-
Sequence-Specific Mapping of the Interaction between Urea and Unfolded Ubiquitin from Ensemble Analysis of NMR and Small Angle Scattering Data
-
Huang, J. R., Gabel, F., Jensen, M. R., Grzesiek, S., and Blackledge, M. (2012) Sequence-Specific Mapping of the Interaction between Urea and Unfolded Ubiquitin from Ensemble Analysis of NMR and Small Angle Scattering Data J. Am. Chem. Soc. 134, 4429-4436
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 4429-4436
-
-
Huang, J.R.1
Gabel, F.2
Jensen, M.R.3
Grzesiek, S.4
Blackledge, M.5
-
34
-
-
0034705338
-
NMR characterization of residual structure in the denatured state of protein L
-
Yi, Q., Scalley-Kim, M. L., Alm, E. J., and Baker, D. (2000) NMR characterization of residual structure in the denatured state of protein L J. Mol. Biol. 299, 1341-1351
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1341-1351
-
-
Yi, Q.1
Scalley-Kim, M.L.2
Alm, E.J.3
Baker, D.4
-
35
-
-
33846913510
-
Atomic-level characterization of disordered protein ensembles
-
Mittag, T. and Forman-Kay, J. D. (2007) Atomic-level characterization of disordered protein ensembles Curr. Opin. Struct. Biol. 17, 3-14
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 3-14
-
-
Mittag, T.1
Forman-Kay, J.D.2
-
36
-
-
84655167815
-
Length-dependent compaction of intrinsically disordered proteins
-
Uversky, V. N., Santambrogio, C., Brocca, S., and Grandori, R. (2012) Length-dependent compaction of intrinsically disordered proteins FEBS Lett. 586, 70-73
-
(2012)
FEBS Lett.
, vol.586
, pp. 70-73
-
-
Uversky, V.N.1
Santambrogio, C.2
Brocca, S.3
Grandori, R.4
-
37
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
Wright, P. E. and Dyson, H. J. (1999) Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm J. Mol. Biol. 293, 321-331
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
38
-
-
37749053887
-
Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
-
Tompa, P. and Fuxreiter, M. (2008) Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions Trends Biochem. Sci. 33, 2-8
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 2-8
-
-
Tompa, P.1
Fuxreiter, M.2
-
39
-
-
0001858251
-
Application of a Theory of Enzyme Specificity to Protein Synthesis
-
Koshland, D. E. (1958) Application of a Theory of Enzyme Specificity to Protein Synthesis Proc. Natl. Acad. Sci. U.S.A. 44, 98-104
-
(1958)
Proc. Natl. Acad. Sci. U.S.A.
, vol.44
, pp. 98-104
-
-
Koshland, D.E.1
-
40
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
Boehr, D. D., Nussinov, R., and Wright, P. E. (2009) The role of dynamic conformational ensembles in biomolecular recognition Nat. Chem. Biol. 5, 789-796
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
41
-
-
9944237833
-
Complementarity of structure ensembles in protein-protein binding
-
Grunberg, R., Leckner, J., and Nilges, M. (2004) Complementarity of structure ensembles in protein-protein binding Structure 12, 2125-2136
-
(2004)
Structure
, vol.12
, pp. 2125-2136
-
-
Grunberg, R.1
Leckner, J.2
Nilges, M.3
-
42
-
-
37749053887
-
Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
-
Tompa, P. and Fuxreiter, M. (2008) Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions Trends Biochem. Sci. 33, 2-8
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 2-8
-
-
Tompa, P.1
Fuxreiter, M.2
-
43
-
-
84867048390
-
Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy
-
Hofmann, H., Soranno, A., Borgia, A., Gast, K., Nettels, D., and Schuler, B. (2012) Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy Proc. Natl. Acad. Sci. U.S.A. 109, 16155-16160
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 16155-16160
-
-
Hofmann, H.1
Soranno, A.2
Borgia, A.3
Gast, K.4
Nettels, D.5
Schuler, B.6
-
44
-
-
78149437446
-
The Distribution of Fatty Acids Reveals the Functional Structure of Human Serum Albumin
-
Junk, M. J. N., Spiess, H. W., and Hinderberger, D. (2010) The Distribution of Fatty Acids Reveals the Functional Structure of Human Serum Albumin Angew. Chem., Int. Ed. 49, 8755-8759
-
(2010)
Angew. Chem., Int. Ed.
, vol.49
, pp. 8755-8759
-
-
Junk, M.J.N.1
Spiess, H.W.2
Hinderberger, D.3
-
45
-
-
0028282555
-
15N NMR relaxation
-
15N NMR relaxation Biochemistry 33, 5984-6003
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
Muhandiram, R.2
Singer, A.U.3
Pascal, S.M.4
Kay, C.M.5
Gish, G.6
Shoelson, S.E.7
Pawson, T.8
Forman-Kay, J.D.9
Kay, L.E.10
-
46
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR 6, 277-293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
47
-
-
0014301121
-
Reductive alkylation of amino groups in proteins
-
Means, G. E. and Feeney, R. E. (1968) Reductive alkylation of amino groups in proteins Biochemistry 7, 2192-2201
-
(1968)
Biochemistry
, vol.7
, pp. 2192
-
-
Means, G.E.1
Feeney, R.E.2
|