Chromatin alterations during pollen development in Hordeum vulgare

Cytogenetic and Genome Research

Volumn 141, Issue 1, 2013, Pages 50-57

  Pandey, P ^a   Houben, A ^a   Kumlehn, J ^a   Melzer, M ^a   Rutten, T ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

Author keywords

Chromatin; Development; Histone; Nucleus; Pollen

Indexed keywords

RNA POLYMERASE II; HISTONE H3; LYSINE;

ANTIBODY LABELING; ARTICLE; BARLEY; CHROMATIN; CYTOKINESIS; GENE ACTIVITY; HISTONE MODIFICATION; METHYLATION; MITOSIS; MORPHOLOGY; POLLEN DEVELOPMENT; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; CELL DIFFERENTIATION; CELL NUCLEUS; CYTOARCHITECTURE; CYTOPLASM; GENE EXPRESSION; NONHUMAN;

ACETYLATION; CELL NUCLEUS; CELL NUCLEUS SHAPE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMOSOMES, PLANT; DNA METHYLATION; GAMETOGENESIS, PLANT; GENE EXPRESSION REGULATION, PLANT; HISTONES; HORDEUM; PLANT CELLS; POLLEN; RNA POLYMERASE II;

HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 84881185559     PISSN: 14248581     EISSN: 1424859X     Source Type: Journal    
DOI: 10.1159/000351211     Document Type: Article

References (48)

1. Borg M, Brownfield L, Twell D: Male gametophyte development: a molecular perspective. J Exp Bot 60: 1465-1478 (2009).
2. Carchilan M, Delgado M, Ribeiro T, Costa-Nunes P, Caperta A, et al: Transcriptionally active heterochromatin in rye B chromosomes. Plant Cell 19: 1738-1749 (2007). (Pubitemid 47218837)
3. Carrozza MJ, Utley RT, Workman JL, Cote, J: The diverse functions of histone acetyltransferase complexes. Trends Genet 19: 321-329 (2003). (Pubitemid 36694615)
4. Cartagena JA, Matsunaga S, Seki M, Kurihara D, Yokoyama M, et al: The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen. Dev Biol 315: 355-368 (2008).
5. Christensen ME, Dixon GH: Hyperacetylation of histone H4 correlates with the terminal, transcriptionally inactive stages of spermatogenesis in rainbow trout. Dev Biol 93: 404-415 (1982). (Pubitemid 13197401)
6. Coronado M-J, Hensel G, Broeders S, Otto I, Kumlehn J: Immature pollen-derived doubled haploid formation in barley cv. Golden Promise as a tool for transgene recombination. Acta Physiol Plant 27: 591-599 (2005).
7. Daghma DS: Structural Changes during the Initiation of Pollen Embryogenesis in Barley ( Hordeum vulgare L.) (Martin-Luther-Universitat Halle-Wittenberg, Halle 2011).
8. Eady C, Lindsey K, Twell D: The significance of microspore division and division symmetry for vegetative cell-specific transcription and generative cell differentiation. Plant Cell 7: 65-74 (1995).
9. Field B, Fiston-Lavier AS, Kemen A, Geisler K, Quesneville H, Osbourn AE: Formation of plant metabolic gene clusters within dynamic chromosomal regions. Proc Natl Acad Sci USA 108: 16116-16121 (2011).
10. Fuchs J, Demidov D, Houben A, Schubert I: Chromosomal histone modification patterns - from conservation to diversity. Trends Plant Sci 11: 199-208 (2006).
11. Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, et al: Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 6: 479-491 (2010).
12. Henikoff S, Ahmad K: Assembly of variant histones into chromatin. Annu Rev Cell Dev Biol 21: 133-153. (2005). (Pubitemid 41740630)
13. Houben A, Demidov D, Gernand D, Meister A, Leach CR, Schubert I: Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content. Plant J 33: 967-973 (2003). (Pubitemid 36400279)
14. Houben A, Kumke K, Nagaki K, Hause G: CENH3 distribution and differential chromatin modifications during pollen development in rye ( Secale cereal L.) Chromosome Res 19: 471-480 (2011).
15. Ingouff M, Hamamura Y, Gourgues M, Higashiyama T, Berger F: Distinct dynamics of HISTONE3 variants between the two fertilization products in plants. Curr Biol 17: 1032-1037 (2007). (Pubitemid 46901160)
16. Jackson JP, Lindroth AM, Cao X, Jacobsen SE: Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416: 556-560 (2002). (Pubitemid 34288860)
17. Kronberg RD: Eukaryotic transcriptional control. Trends Biochem Sci 24:M46-M49 (1999).
18. Kuo MH, Allis CD: Roles of histone acetyltransferases and deacetylases in gene regulation. Bioessays 20: 615-626 (1998). (Pubitemid 28422221)
19. Lafos M, Kroll P, Hohenstatt ML, Thorpe FL, Clarenz O, Schubert D: Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation. PLoS Genet 7:e1002040 (2011).
20. Lan F, Bayliss PE, Rinn JL, Whetstine JR, Wang JK, et al: A histone H3 lysine 27 demethylase regulates animal posterior development. Nature 449: 689-694 (2007). (Pubitemid 47552096)
21. Lechner T, Lusser A, Pipal A, Brosch G, Loidl A, et al: RPD3-type histone deacetylases in maize embryos. Biochemistry 39: 1683-1692 (2000). (Pubitemid 30108958)
22. Lermontova I, Koroleva O, Rutten T, Fuchs J, Schubert V, et al: Knockdown of CENH3 in Arabidopsis reduces mitotic divisions and causes sterility by disturbed meiotic chromosome segregation. Plant J 68: 40-50 (2011).
23. Li Y, Butenko Y, Grafi G: Histone deacetylation is required for progression through mitosis in tobacco cells. Plant J 41: 346-352 (2005). (Pubitemid 40252754)
24. Li X, Wang X, He K, Ma Y, Su N, et al: High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell 20: 259-276 (2008). (Pubitemid 352844011)
25. Lienert F, Mohn F, Tiwari VK, Baubec T, Roloff TC, et al: Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells. PLoS Genet 7:e1002090 (2011).
26. Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, et al: Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J 23: 4286-4296 (2004). (Pubitemid 39546166)
27. Liu C, Lu F, Cui X, Cao X: Histone methylation in higher plants. Annu Rev Plant Biol 61: 395-420 (2010).
28. Malagnac F, Bartee L, Bender J: An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J 21: 6842-6852 (2002). (Pubitemid 36014556)
29. Okada T, Singh MB, Bhalla PL: Histone H3 variants in male gametic cells of lily and H3 methylation in mature pollen. Plant Mol Biol 62: 503-512 (2006). (Pubitemid 44652246)
30. Orford K, Kharchenko P, Lai W, Dao MC, Worhunsky DJ, et al: Differential H3K4 methylation identifies developmentally poised hematopoietic genes. Dev Cell 14: 798-809 (2008). (Pubitemid 351622618)
31. Pekowska A, Benoukraf T, Ferrier P, Spicuglia S: A unique H3K4me2 profile marks tissue-specific gene regulation. Genome Res 20: 1493-1502 (2010).
32. Pfluger J, Wagner D: Histone modifications and dynamic regulation of genome accessibility in plants. Curr Opin Plant Biol 10: 645-652 (2007). (Pubitemid 350030606)
33. Ribeiro T, Viegas W, Morais-Cecilio L: Epigenetic marks in the mature pollen of Quercus suber L. (Fagaceae). Sex Plant Reprod 22: 1-7 (2009).
34. Roudier F, Teixeira FK, Colot V: Chromatin indexing in Arabidopsis : an epigenomic tale of tails and more. Trends Genet 25: 511-517 (2009).
35. Saito C, Fujie M, Sakai A, Kuroiwa H, Kuroiwa T: Changes in the extent of the condensation of nuclear chromatin and the localization of RNA during pollen development in Nicotiana tabacum. Cytologia 62: 121-132 (1997). (Pubitemid 27369512)
36. Sanei M, Pickering R, Kumke K, Nasuda S, Houben A: Loss of centromeric histone H3 (CENH3) from centromeres precedes uniparental chromosome elimination in interspecific barley hybrids. Proc Natl Acad Sci USA 108:E498-E505 (2011).
37. Sano Y, Tanaka I: Distinct localization of histonee H3 methylation in the vegetative nucleus of lily pollen. Cell Biol Int 34: 253-259 (2010).
38. Schoft VK, Chumak N, Mosiolek M, Slusarz L, Komnenovic V, et al: Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin. EMBO Rep 10: 1015-1021 (2009).
39. Schubert D, Clarenz O, Goodrich J: Epigenetic control of plant development by Polycombgroup proteins. Curr Opin Plant Biol 8: 553-561 (2005). (Pubitemid 41188192)
40. Struhl K: Histone acetylation and transcriptional regulatory mechanisms. Genes Dev 12: 599-606 (1998). (Pubitemid 28134293)
41. Swigut T, Wysocka J: H3K27 demethylases, at long last. Cell 131: 29-32 (2007). (Pubitemid 47498542)
42. Talbert PB, Masuelli R, Tyagi AP, Comai L, Henikoff S: Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant. Plant Cell 14: 1053-1066 (2002). (Pubitemid 34609216)
43. Tanaka I: Differentiation of generative and vegetative cells in angiosperm pollen. Sex Plant Reprod 10: 1-7 (1997). (Pubitemid 27140890)
44. Twell D, Park SK, Lalanne E: Asymmetric division and cell-fate determination in developing pollen. Trends Plant Sci 3: 305-310 (1998). (Pubitemid 28362116)
45. Vaillant I, Paszkowski J: Role of histone and DNA methylation in gene regulation. Cur Opin Plant Biol 10: 528-533 (2007). (Pubitemid 47505405)
46. van Dijk K, Ding Y, Malkaram S, Riethoven JJM, Liu R, et al: Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana. BMC Plant Biol 10: 238 (2010).
47. Zhang X, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE: Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol 10:R62 (2009).
48. Zhou J, Wang X, He K, Charron JB, Elling AA, Deng XW: Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression. Plant Mol Biol 72: 585-595 (2010).