Detection of unusual G6 rotavirus strains in Italian children with diarrhoea during the 2011 surveillance season

Journal of Medical Virology

Volumn 85, Issue 10, 2013, Pages 1860-1869

  Ianiro, Giovanni ^a   Delogu, Roberto ^a   Camilloni, Barbara ^b   Lorini, Chiara ^c   Ruggeri, Franco M ^a   Fiore, Lucia ^a  

^a ISTITUTO SUPERIORE DI SANITÀ   (Italy)

^b UNIVERSITY OF PERUGIA   (Italy)

^c UNIVERSITY OF FLORENCE   (Italy)

Author keywords

G6P 6 ; G6P 9 ; Group A rotavirus; HBGA; Italy; Sequence

Indexed keywords

NONSTRUCTURAL PROTEIN 1; NONSTRUCTURAL PROTEIN 2; NONSTRUCTURAL PROTEIN 3; NONSTRUCTURAL PROTEIN 4; NONSTRUCTURAL PROTEIN 5;

ARTICLE; CHILD; DIARRHEA; GENOTYPE; HUMAN; INFANT; ITALY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRESCHOOL CHILD; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; VIRUS DETECTION; VIRUS GENOME; ZOONOSIS;

G6P[6]; G6P[9]; GROUP A ROTAVIRUS; HBGA; ITALY; SEQUENCE;

CLUSTER ANALYSIS; FECES; GENOTYPE; HUMANS; INFANT; ITALY; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS;

ROTAVIRUS; ROTAVIRUS A;

EID: 84881026637     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23644     Document Type: Article

References (38)

1. De Grazia S, Martella V, Rotolo V, Bonura F, Matthijnssens J, Banyai K, Ciarlet M, Giammanco GM. 2011. Molecular characterization of genotype G6 human rotavirus strains detected in Italy from 1986 to 2009. Infect Genet Evol 11:1449-1455.
2. Dunn SJ, Fiore L, Werner RL, Cross TL, Broome RL, Ruggeri FM, Greenberg HB. 1995. Immunogenicity, antigenicity, and protection efficacy of baculovirus expressed VP4 trypsin cleavage products, VP5(1)* and VP8* from rhesus rotavirus. Arch Virol 140:1969-1978.
3. Estes MK, Cohen J. 1989. Rotavirus gene structure and function. Microbiol Rev 53:410-449.
4. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365-1373.
5. Gentsch JR, Hull JJ, Teel EN, Kerin TK, Freeman MM, Esona MD, Griffin DD, Bielfelt-Krall BP, Banyai K, Jiang B, Cortese MM, Glass RI, Parashar UD. 2009. G and P types of circulating rotavirus strains in the United States during 1996-2005 : Nine years of prevaccine data. J Infect Dis 200:S99-S105.
6. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:S146-S159.
7. Gerna G, Sears J, Hoshino Y, Steele AD, Nakagomi O, Sarasini A, Flores J. 1994. Identification of a new VP4 serotype of human rotaviruses. Virology 200:66-71.
8. Hoshino Y, Sereno MM, Midthun K, Flores J, Kapikian AZ, Chanock RM. 1985. Independent segregation of two antigenic specificities (VP3 and VP7) involved in neutralization of rotavirus infectivity. Proc Natl Acad Sci USA 82:8701-8704.
9. Hu L, Crawford SE, Czako R, Cortes-Penfield NW, Smith DF, Le Pendu J, Estes MK, Prasad BV. 2012. Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen. Nature 485:256-259.
10. Huang P, Xia M, Tan M, Zhong W, Wei C, Wang L, Morrow A, Jiang X. 2012. Spike protein VP8* of human rotavirus recognizes histo-blood group antigens in a type-specific manner. J Virol 86:4833-4843.
11. Ijaz MK, Attah-Poku SK, Redmond MJ, Parker MD, Sabara MI, Frenchick P, Babiuk LA. 1991. Heterotypic passive protection induced by synthetic peptides corresponding to VP7 and VP4 of bovine rotavirus. J Virol 65:3106-3113.
12. Iturriza Gomara M, Kang G, Mammen A, Jana AK, Abraham M, Desselberger U, Brown D, Gray J. 2004. Characterization of G10P[11] rotaviruses causing acute gastroenteritis in neonates and infants in Vellore, India. J Clin Microbiol 42:2541-2547.
13. Iturriza-Gomara M, Dallman T, Banyai K, Bottiger B, Buesa J, Diedrich S, Fiore L, Johansen K, Koopmans M, Korsun N, Koukou D, Kroneman A, Laszlo B, Lappalainen M, Maunula L, Marques AM, Matthijnssens J, Midgley S, Mladenova Z, Nawaz S, Poljsak-Prijatelj M, Pothier P, Ruggeri FM, Sanchez-Fauquier A, Steyer A, Sidaraviciute-Ivaskeviciene I, Syriopoulou V, Tran AN, Usonis V, Van Ranst M, De Rougemont A, Gray J. 2011. Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network. Epidemiol Infect 139:895-909.
14. Iturriza-Gomara M, Kang G, Gray J. 2004. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J Clin Virol 31:259-265.
15. Kalica AR, Greenberg HB, Espejo RT, Flores J, Wyatt RG, Kapikian AZ, Chanock RM. 1981. Distinctive ribonucleic acid patterns of human rotavirus subgroups 1 and 2. Infect Immun 33:958-961.
16. Linhares AC, Velazquez FR, Perez-Schael I, Saez-Llorens X, Abate H, Espinoza F, Lopez P, Macias-Parra M, Ortega-Barria E, Rivera-Medina DM, Rivera L, Pavia-Ruz N, Nunez E, Damaso S, Ruiz-Palacios GM, De Vos B, O'Ryan M, Gillard P, Bouckenooghe A. 2008. Efficacy and safety of an oral live attenuated human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in Latin American infants: A randomised, double-blind, placebo-controlled phase III study. Lancet 371:1181-1189.
17. Madhi SA, Cunliffe NA, Steele D, Witte D, Kirsten M, Louw C, Ngwira B, Victor JC, Gillard PH, Cheuvart BB, Han HH, Neuzil KM. 2010. Effect of human rotavirus vaccine on severe diarrhea in African infants. N Engl J Med 362:289-298.
18. Martella V, Banyai K, Matthijnssens J, Buonavoglia C, Ciarlet M. 2010. Zoonotic aspects of rotaviruses. Vet Microbiol 140:246-255.
19. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gomara M, Maes P, Patton JT, Rahman M, Van Ranst M. 2008a. Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204-3219.
20. Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Banyai K, Brister JR, Buesa J, Esona MD, Estes MK, Gentsch JR, Iturriza-Gomara M, Johne R, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Parreno V, Rahman M, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Patton JT, Desselberger U, Van Ranst M. 2011. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397-1413.
21. Matthijnssens J, Heylen E, Zeller M, Rahman M, Lemey P, Van Ranst M. 2010. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol Biol Evol 27:2431-2436.
22. Matthijnssens J, Rahman M, Van Ranst M. 2008b. Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J Gen Virol 89:2630-2635.
23. Matthijnssens J, Rahman M, Yang X, Delbeke T, Arijs I, Kabue JP, Muyembe JJ, Van Ranst M. 2006. G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44:1801-1809.
24. Matthijnssens J, Van Ranst M. 2012. Genotype constellation and evolution of group A rotaviruses infecting humans. Curr Opin Virol 2:426-433.
25. Nordgren J, Bonkoungou IJ, Nitiema LW, Sharma S, Ouermi D, Simpore J, Barro N, Svensson L. 2012a. Rotavirus in diarrheal children in rural Burkina Faso: High prevalence of genotype G6P[6]. Infect Genet Evol 12:1892-1898.
26. Nordgren J, Nitiema LW, Sharma S, Ouermi D, Traore AS, Simpore J, Svensson L. 2012b. Emergence of unusual G6P[6] rotaviruses in children, Burkina Faso, 2009-2010. Emerg Infect Dis 18:589-597.
27. Offit PA, Dudzik KI. 1988. Rotavirus-specific cytotoxic T lymphocytes cross-react with target cells infected with different rotavirus serotypes. J Virol 62:127-131.
28. Pietsch C, Petersen L, Patzer L, Liebert UG. 2009. Molecular characteristics of German G8P[4] rotavirus strain GER1H-09 suggest that a genotyping and subclassification update is required for G8. J Clin Microbiol 47:3569-3576.
29. Ruggeri FM, Delogu R, Petouchoff T, Tcheremenskaia O, De Petris S, Fiore L. 2011. Molecular characterization of rotavirus strains from children with diarrhea in Italy, 2007-2009. J Med Virol 83:1657-1668.
30. Ruiz-Palacios GM, Perez-Schael I, Velazquez FR, Abate H, Breuer T, Clemens SC, Cheuvart B, Espinoza F, Gillard P, Innis BL, Cervantes Y, Linhares AC, Lopez P, Macias-Parra M, Ortega-Barria E, Richardson V, Rivera-Medina DM, Rivera L, Salinas B, Pavia-Ruz N, Salmeron J, Ruttimann R, Tinoco JC, Rubio P, Nunez E, Guerrero ML, Yarzabal JP, Damaso S, Tornieporth N, Saez-Llorens X, Vergara RF, Vesikari T, Bouckenooghe A, Clemens R, De Vos B, O'Ryan M. 2006. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N Engl J Med 354:11-22.
31. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
32. Sow SO, Tapia M, Haidara FC, Ciarlet M, Diallo F, Kodio M, Doumbia M, Dembele RD, Traore O, Onwuchekwa UU, Lewis KD, Victor JC, Steele AD, Neuzil KM, Kotloff KL, Levine MM. 2012. Efficacy of the oral pentavalent rotavirus vaccine in Mali. Vaccine 30:A71-A78.
33. Tate JE, Burton AH, Boschi-Pinto C, Steele AD, Duque J, Parashar UD. 2012. 2008 Estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: A systematic review and meta-analysis. Lancet Infect Dis 12:136-141.
34. Todd S, Page NA, Duncan Steele A, Peenze I, Cunliffe NA. 2010. Rotavirus strain types circulating in Africa: Review of studies published during 1997-2006. J Infect Dis 202:S34-S42.
35. Trojnar E, Sachsenroder J, Twardziok S, Reetz J, Otto PH, Johne R. 2013. Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94:136-142.
36. Vesikari T, Clark HF, Offit PA, Dallas MJ, DiStefano DJ, Goveia MG, Ward RL, Schodel F, Karvonen A, Drummond JE, DiNubile MJ, Heaton PM. 2006. Effects of the potency and composition of the multivalent human-bovine (WC3) reassortant rotavirus vaccine on efficacy, safety and immunogenicity in healthy infants. Vaccine 24:4821-4829.
37. Ward RL, Kirkwood CD, Sander DS, Smith VE, Shao M, Bean JA, Sack DA, Bernstein DI. 2006. Reductions in cross-neutralizing antibody responses in infants after attenuation of the human rotavirus vaccine candidate 89-12. J Infect Dis 194:1729-1736.
38. Yamamoto D, Kawaguchiya M, Ghosh S, Ichikawa M, Numazaki K, Kobayashi N. 2011. Detection and full genomic analysis of G6P[9] human rotavirus in Japan. Virus Genes 43:215-223.