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Volumn 29, Issue 16, 2013, Pages 2049-2050

PING 2.0: An R/Bioconductor package for nucleosome positioning using next-generation sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOSOME;

EID: 84881008894     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt348     Document Type: Article
Times cited : (15)

References (11)
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  • 2
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  • 3
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    • ChIPseqR: Analysis of ChIP-seq experiments
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    • Humburg1
  • 5
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    • Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing
    • Kent et al. (2010) Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing. Nucleic Acids Res., 39, e26.
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  • 6
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    • NORMAL: Accurate nucleosome positioning using a modified Gaussian mixture model
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  • 8
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    • High-resolution nucleosome mapping reveals transcriptiondependent promotor packaging
    • Weiner et al. (2010) High-resolution nucleosome mapping reveals transcriptiondependent promotor packaging. Genome Res., 20, 90-100.
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  • 9
    • 57449095143 scopus 로고    scopus 로고
    • Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq
    • Zhang et al. (2008) Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq. BMC Genomics, 9, 537.
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  • 10
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    • Probabilistic inference for nucleosome positioning with MNasebased or sonicated short-read data
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