메뉴 건너뛰기




Volumn 20, Issue 9, 2013, Pages 6646-6657

Abundance of denitrification genes under different peizometer depths in four Irish agricultural groundwater sites

Author keywords

Denitrification; Groundwater; nirK; nirS; nosZ; Piezometer; qPCR; Subsoil

Indexed keywords

ABUNDANCE; AGRICULTURAL LAND; BACTERIUM; BEDROCK; DENITRIFICATION; GROUNDWATER POLLUTION; LAND MANAGEMENT; PIEZOMETER; SUBSOIL;

EID: 84880836682     PISSN: 09441344     EISSN: 16147499     Source Type: Journal    
DOI: 10.1007/s11356-013-1729-3     Document Type: Article
Times cited : (16)

References (49)
  • 1
    • 31144457667 scopus 로고    scopus 로고
    • Denitrification capacity in a subterranean estuary below a Rhode Island fringing salt marsh
    • Addy K, Gold AJ, Nowicki B, McKenna J, Stolt M, Groffman PM (2005) Denitrification capacity in a subterranean estuary below a Rhode Island fringing salt marsh. Estuaries 29: 896-908.
    • (2005) Estuaries , vol.29 , pp. 896-908
    • Addy, K.1    Gold, A.J.2    Nowicki, B.3    McKenna, J.4    Stolt, M.5    Groffman, P.M.6
  • 2
    • 61649113154 scopus 로고    scopus 로고
    • A multi-flowpath model for the interpretation of immiscible displacement experiments in heterogeneous soil columns
    • Aggelopoulos CA, Tsakiroglou CD (2009) A multi-flowpath model for the interpretation of immiscible displacement experiments in heterogeneous soil columns. J Contam Hydrol 105: 146-160.
    • (2009) J Contam Hydrol , vol.105 , pp. 146-160
    • Aggelopoulos, C.A.1    Tsakiroglou, C.D.2
  • 3
    • 0034235620 scopus 로고    scopus 로고
    • Crop management and corn nit rogen rate effects on nitrate leaching
    • Andraski TW, Bundy LG, Brye KR (2000) Crop management and corn nit rogen rate effects on nitrate leaching. J Environ Qual 29: 1095-1103.
    • (2000) J Environ Qual , vol.29 , pp. 1095-1103
    • Andraski, T.W.1    Bundy, L.G.2    Brye, K.R.3
  • 4
    • 0032719263 scopus 로고    scopus 로고
    • Denitrification under high nitrate concentration and alternating anoxic conditions
    • Bilanovic D, Battistoni P, Cecchi F, Pavan P, Mataalvarez J (1999) Denitrification under high nitrate concentration and alternating anoxic conditions. Water Res 33(15): 3311-3320.
    • (1999) Water Res , vol.33 , Issue.15 , pp. 3311-3320
    • Bilanovic, D.1    Battistoni, P.2    Cecchi, F.3    Pavan, P.4    Mataalvarez, J.5
  • 5
    • 0036662138 scopus 로고    scopus 로고
    • Denitrification in the recharge and discharge area of a transient agricultural nitrate plume in a glacial outwash sand aquifer. Minnesota
    • Bohlke KJ, Wanty R, Tuttle M, Delin G, Landon M (2002) Denitrification in the recharge and discharge area of a transient agricultural nitrate plume in a glacial outwash sand aquifer. Minnesota. Water Res Res 38: 1-26.
    • (2002) Water Res Res , vol.38 , pp. 1-26
    • Bohlke, K.J.1    Wanty, R.2    Tuttle, M.3    Delin, G.4    Landon, M.5
  • 6
    • 33646012303 scopus 로고    scopus 로고
    • Surface N balances and reactive N loss to the environment from global intensive agricultural production systems for the period 1970-2030
    • Bouwman AF, van Drecht G, van der Hoek KW (2005) Surface N balances and reactive N loss to the environment from global intensive agricultural production systems for the period 1970-2030. Sci China Life Sci 48: 113.
    • (2005) Sci China Life Sci , vol.48 , pp. 113
    • Bouwman, A.F.1    van Drecht, G.2    van der Hoek, K.W.3
  • 7
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker G, Fesefeldt A, Witzel K-P (1998) Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 64: 3769-3775.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.-P.3
  • 8
    • 17044455893 scopus 로고    scopus 로고
    • Influences of the stream groundwater hydrology on nitrate concentration in unsaturated riparian area bounded by an intermittent Mediterranean stream
    • Butturini A, Bernal S, Nin E, Hellin C, Rivero L, Sabater S, Sabater F (2003) Influences of the stream groundwater hydrology on nitrate concentration in unsaturated riparian area bounded by an intermittent Mediterranean stream. Water Resour Res 39: 1110.
    • (2003) Water Resour Res , vol.39 , pp. 1110
    • Butturini, A.1    Bernal, S.2    Nin, E.3    Hellin, C.4    Rivero, L.5    Sabater, S.6    Sabater, F.7
  • 9
    • 36348995417 scopus 로고    scopus 로고
    • DNA extraction method affects microbial community profiles from soils and sediment
    • Carrigg C, Rice O, Kavanagh S, Collins G, O'Flaherty V (2007) DNA extraction method affects microbial community profiles from soils and sediment. App Microbiol Biotechnol 77(4): 955-964.
    • (2007) App Microbiol Biotechnol , vol.77 , Issue.4 , pp. 955-964
    • Carrigg, C.1    Rice, O.2    Kavanagh, S.3    Collins, G.4    O'Flaherty, V.5
  • 10
    • 0034008944 scopus 로고    scopus 로고
    • Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input
    • Cho JC, Kim SJ (2000) Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input. Appl Environ Microbiol 66(3): 956-965.
    • (2000) Appl Environ Microbiol , vol.66 , Issue.3 , pp. 956-965
    • Cho, J.C.1    Kim, S.J.2
  • 11
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18: 117-143.
    • (1993) Aust J Ecol , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 12
    • 33644823362 scopus 로고    scopus 로고
    • Effects of water table and fertilization management on nitrogen loading to groundwater
    • Guo H, Li G, Zhang D, Xu Z, Lu C'a (2006) Effects of water table and fertilization management on nitrogen loading to groundwater. Agric Water Manag 82: 86-98.
    • (2006) Agric Water Manag , vol.82 , pp. 86-98
    • Guo, H.1    Li, G.2    Zhang, D.3    Xu, Z.4    Lu, C.5
  • 13
    • 33747335398 scopus 로고    scopus 로고
    • Quantitative detection of the nosZ Gene, encoding nitrous oxiden reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
    • Henry S, Bru D, Stres B, Hallet S, Philippot L (2006) Quantitative detection of the nosZ Gene, encoding nitrous oxiden reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl Environ Microbiol 72(8): 5181-5189.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.8 , pp. 5181-5189
    • Henry, S.1    Bru, D.2    Stres, B.3    Hallet, S.4    Philippot, L.5
  • 14
    • 0030199785 scopus 로고    scopus 로고
    • Nitrate removal in stream riparian zones
    • Hill AR (1996) Nitrate removal in stream riparian zones. J Environ Qual 25: 743-755.
    • (1996) J Environ Qual , vol.25 , pp. 743-755
    • Hill, A.R.1
  • 15
    • 67649876309 scopus 로고    scopus 로고
    • Food sources of nitrates and nitrites: the physiologic context for potential health benefits
    • Hord NG, Tang Y, Bryan NS (2009) Food sources of nitrates and nitrites: the physiologic context for potential health benefits. Am J Clin Nutr 90: 1-10.
    • (2009) Am J Clin Nutr , vol.90 , pp. 1-10
    • Hord, N.G.1    Tang, Y.2    Bryan, N.S.3
  • 16
    • 85099528546 scopus 로고    scopus 로고
    • IPCC, Intergovernmental Panel on Climate Change, Geneva
    • IPCC (2001) Good practice guidance and uncertainty management in national greenhouse gas inventories-indirect N2O emissions from agriculture. Intergovernmental Panel on Climate Change, Geneva.
    • (2001) 2O Emissions From Agriculture
  • 17
    • 84862012112 scopus 로고    scopus 로고
    • Linking hydrogeochemistry to nitrate abundance in groundwater in agricultural settings in Ireland
    • Jahangir MMR, Johnston P, Khalil MI, Richards KG (2012a) Linking hydrogeochemistry to nitrate abundance in groundwater in agricultural settings in Ireland. J Hydrol 448: 212-222.
    • (2012) J Hydrol , vol.448 , pp. 212-222
    • Jahangir, M.M.R.1    Johnston, P.2    Khalil, M.I.3    Richards, K.G.4
  • 18
    • 84863824410 scopus 로고    scopus 로고
    • Groundwater: A pathway of terrestrial C and N losses and indirect greenhouse gas emissions
    • Jahangir MMR, Johnston P, Khalil MI, Richards KG (2012b) Groundwater: a pathway of terrestrial C and N losses and indirect greenhouse gas emissions. Agric Ecosyst Environ 159: 40-48.
    • (2012) Agric Ecosyst Environ , vol.159 , pp. 40-48
    • Jahangir, M.M.R.1    Johnston, P.2    Khalil, M.I.3    Richards, K.G.4
  • 20
    • 33748792525 scopus 로고    scopus 로고
    • Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland
    • Kandeler E, Deiglmayr K, Tscherko D, Bru D. Philippot L (2006) Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl Environ Microb 72(9): 5957-5962.
    • (2006) Appl Environ Microb , vol.72 , Issue.9 , pp. 5957-5962
    • Kandeler, E.1    Deiglmayr, K.2    Tscherko, D.3    Philippot, B.D.4
  • 21
    • 0032892798 scopus 로고    scopus 로고
    • Factors regulating denitrification in a soil under pasture
    • Luo J, Tillman RW, Ball PR (1999) Factors regulating denitrification in a soil under pasture. Soil Biol Biochem 31: 913-927.
    • (1999) Soil Biol Biochem , vol.31 , pp. 913-927
    • Luo, J.1    Tillman, R.W.2    Ball, P.R.3
  • 23
    • 71549141602 scopus 로고    scopus 로고
    • Nitrate removal and biofilm characteristics in methanotrophic membrane biofilm reactors with various gas supply regimes
    • Modin O, Fukushi K, Nakajima K, Yamamoto K (2010) Nitrate removal and biofilm characteristics in methanotrophic membrane biofilm reactors with various gas supply regimes. Water Res 44(1): 85-96.
    • (2010) Water Res , vol.44 , Issue.1 , pp. 85-96
    • Modin, O.1    Fukushi, K.2    Nakajima, K.3    Yamamoto, K.4
  • 24
    • 0033710281 scopus 로고    scopus 로고
    • Review of the IPCC methodology for estimating nitrous oxide emissions associated with agriltural leaching and runoff
    • Nevison C (2000) Review of the IPCC methodology for estimating nitrous oxide emissions associated with agriltural leaching and runoff. Chemosphere-Global Change Sci 2: 493-500.
    • (2000) Chemosphere-Global Change Sci , vol.2 , pp. 493-500
    • Nevison, C.1
  • 25
    • 36649013440 scopus 로고    scopus 로고
    • Inputs of trace elements in agricultural soils via phosphate fertilizers in European countries
    • Nziguheba G, Smolders E (2008) Inputs of trace elements in agricultural soils via phosphate fertilizers in European countries. Sci Total Environ 390(1): 53-57.
    • (2008) Sci Total Environ , vol.390 , Issue.1 , pp. 53-57
    • Nziguheba, G.1    Smolders, E.2
  • 26
    • 0021548058 scopus 로고
    • Nutrient dynamics in an agricultural watershed: observations on the role of a riparian forest
    • Peterjohn WT, Correll DL (1984) Nutrient dynamics in an agricultural watershed: observations on the role of a riparian forest. Ecology 65(5): 1466-1475.
    • (1984) Ecology , vol.65 , Issue.5 , pp. 1466-1475
    • Peterjohn, W.T.1    Correll, D.L.2
  • 27
    • 76749106695 scopus 로고    scopus 로고
    • EU-Rotate_N-a European decision support system-to predict environmental and economic consequences of the management of nitrogen fertiliser in crop rotations
    • Rahn RC et al (2010) EU-Rotate_N-a European decision support system-to predict environmental and economic consequences of the management of nitrogen fertiliser in crop rotations. Eur J Hortic Sci 75: 20-32.
    • (2010) Eur J Hortic Sci , vol.75 , pp. 20-32
    • Rahn, R.C.1
  • 28
    • 67549136082 scopus 로고    scopus 로고
    • Mitigating release of the potent greenhouse gas N2O from the nitrogen cycle - could enzymic regulation hold the key?
    • Richardson D, Felgate G, Watmough N, Thomson A, Baggs E (2009) Mitigating release of the potent greenhouse gas N2O from the nitrogen cycle - could enzymic regulation hold the key? Trends in Biotechnology 27(7): 388-397.
    • (2009) Trends In Biotechnology , vol.27 , Issue.7 , pp. 388-397
    • Richardson, D.1    Felgate, G.2    Watmough, N.3    Thomson, A.4    Baggs, E.5
  • 30
    • 33644949502 scopus 로고    scopus 로고
    • Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer
    • Santoro AE, Boehm AB, Francis CA (2006) Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer. Appl Environ Microbiol 72(3): 2102-2109.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.3 , pp. 2102-2109
    • Santoro, A.E.1    Boehm, A.B.2    Francis, C.A.3
  • 31
    • 0033458784 scopus 로고    scopus 로고
    • Design of PCR primers and gene probes for the general detection of bacterial populationscapable of degrading aromatic compounds via catechol cleavage pathways
    • Sei K, Asano K, Tateishi N, Mori K, Ike M, Fujita M (1999) Design of PCR primers and gene probes for the general detection of bacterial populationscapable of degrading aromatic compounds via catechol cleavage pathways. J Biosci Bioeng 88(5): 542-550.
    • (1999) J Biosci Bioeng , vol.88 , Issue.5 , pp. 542-550
    • Sei, K.1    Asano, K.2    Tateishi, N.3    Mori, K.4    Ike, M.5    Fujita, M.6
  • 32
    • 0034302218 scopus 로고    scopus 로고
    • Biological denitrification of groundwater
    • Soares MIM (2000) Biological denitrification of groundwater. Water Air Soil Pollut 123: 183-193.
    • (2000) Water Air Soil Pollut , vol.123 , pp. 183-193
    • Soares, M.I.M.1
  • 34
    • 77957148279 scopus 로고    scopus 로고
    • The continuing challenge of agricultural nitrogen loss to the environment in the context of global change and advancing research
    • Stark CH, Richards KG (2008a) The continuing challenge of agricultural nitrogen loss to the environment in the context of global change and advancing research. Dyn Soil Dyn Plant 2: 1-12.
    • (2008) Dyn Soil Dyn Plant , vol.2 , pp. 1-12
    • Stark, C.H.1    Richards, K.G.2
  • 35
    • 68249085988 scopus 로고    scopus 로고
    • The continuing challenge of nitrogen loss to the environment: environmental consequences and mitigation strategies
    • Stark CH, Richards KG (2008b) The continuing challenge of nitrogen loss to the environment: environmental consequences and mitigation strategies. Dyn Soil Dyn Plant 2: 41-55.
    • (2008) Dyn Soil Dyn Plant , vol.2 , pp. 41-55
    • Stark, C.H.1    Richards, K.G.2
  • 36
    • 0024799419 scopus 로고
    • Solute input into groundwater from sandy soils under arable land and coniferous forest: determination of area-representative mean values of concentration
    • Strebel O, Bo{double acute}ttcher J (1989) Solute input into groundwater from sandy soils under arable land and coniferous forest: determination of area-representative mean values of concentration. Agric Water Manag 15: 265-278.
    • (1989) Agric Water Manag , vol.15 , pp. 265-278
    • Strebel, O.1    Bottcher, J.2
  • 37
    • 34548722809 scopus 로고    scopus 로고
    • The release of phosphorus to porewater and surface water from river riparian sediments
    • Surridge BWJ, Heathwaite AL, Baird AJ (2007) The release of phosphorus to porewater and surface water from river riparian sediments. J Environ Qual 36: 1534-1544.
    • (2007) J Environ Qual , vol.36 , pp. 1534-1544
    • Surridge, B.W.J.1    Heathwaite, A.L.2    Baird, A.J.3
  • 38
    • 0028257567 scopus 로고
    • Nitrate transport and transformation processes in unsaturated porous media
    • Tindall JA, Petrusak RL, McMahon C, Peter B (1995) Nitrate transport and transformation processes in unsaturated porous media. J Hydrol 169(1-4): 51-94.
    • (1995) J Hydrol , vol.169 , Issue.1-4 , pp. 51-94
    • Tindall, J.A.1    Petrusak, R.L.2    McMahon, C.3    Peter, B.4
  • 39
    • 79960234670 scopus 로고    scopus 로고
    • Enhanced denitrification in groundwater and sediments from a nitrate-contaminated aquifer after addition of pyrite
    • Torrentó C, Urmeneta J, Otero N, Soler A, Viñas M, Cama J (2011) Enhanced denitrification in groundwater and sediments from a nitrate-contaminated aquifer after addition of pyrite. Chem Geol 287: 90-101.
    • (2011) Chem Geol , vol.287 , pp. 90-101
    • Torrentó, C.1    Urmeneta, J.2    Otero, N.3    Soler, A.4    Viñas, M.5    Cama, J.6
  • 40
    • 84880836359 scopus 로고    scopus 로고
    • Article 11-Attachment A1-proposed maximum concentration limits
    • USEPA, Washington
    • USEPA (2009) Article 11-Attachment A1-proposed maximum concentration limits. US Environmental Protection Agency, Washington.
    • (2009) US Environmental Protection Agency
  • 41
    • 79960733466 scopus 로고    scopus 로고
    • Fertilizer management effects on nitrate leaching and indirect nitrous oxide emissions in irrigated potato production
    • Venterea RT, Hyatt CR, Rosen CJ (2011) Fertilizer management effects on nitrate leaching and indirect nitrous oxide emissions in irrigated potato production. J Environ Qual 40: 1103-1112.
    • (2011) J Environ Qual , vol.40 , pp. 1103-1112
    • Venterea, R.T.1    Hyatt, C.R.2    Rosen, C.J.3
  • 45
    • 0003771862 scopus 로고
    • Guidelines for drinking water quality
    • World Health Organisation (WHO)
    • World Health Organisation (WHO) (1984) Guidelines for drinking water quality. World Health Organ Geneva 2: 290-292.
    • (1984) World Health Organ Geneva , vol.2 , pp. 290-292
  • 46
    • 0037229896 scopus 로고    scopus 로고
    • Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater
    • Yan TF, Fields MW, Wu LY, Zu YG, Tiedje JM, Zhou JZ (2003) Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environ Microbiol 5: 13-24.
    • (2003) Environ Microbiol , vol.5 , pp. 13-24
    • Yan, T.F.1    Fields, M.W.2    Wu, L.Y.3    Zu, Y.G.4    Tiedje, J.M.5    Zhou, J.Z.6
  • 47
    • 16344363305 scopus 로고    scopus 로고
    • Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
    • Yu Y, Lee C, Kim J, Hwang S (2005) Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnol Bioeng 89(6): 670-679.
    • (2005) Biotechnol Bioeng , vol.89 , Issue.6 , pp. 670-679
    • Yu, Y.1    Lee, C.2    Kim, J.3    Hwang, S.4
  • 48
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou J, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62(2): 316-322.
    • (1996) Appl Environ Microbiol , vol.62 , Issue.2 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3
  • 49
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft WG (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61: 533-616.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.