-
1
-
-
53449086190
-
Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
-
Acosta-Martínez V, Dowd S, Sun Y, Allen V (2008) Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biol Biochem 40: 2762-2770.
-
(2008)
Soil Biol Biochem
, vol.40
, pp. 2762-2770
-
-
Acosta-Martínez, V.1
Dowd, S.2
Sun, Y.3
Allen, V.4
-
2
-
-
0037667122
-
The use of neutral lipid fatty acids to indicate the physiological conditions of soil fungi
-
Bååth E (2003) The use of neutral lipid fatty acids to indicate the physiological conditions of soil fungi. Microb Ecol 45: 373-383.
-
(2003)
Microb Ecol
, vol.45
, pp. 373-383
-
-
Bååth, E.1
-
3
-
-
85047677847
-
Changes in soil fungal:bacterial biomass ratios following reductions in the intensity of management of an upland grassland
-
Bardgett RD, Hobbs PJ, Frostegårde A (1996) Changes in soil fungal: bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biol Fert Soils 22: 261-264.
-
(1996)
Biol Fert Soils
, vol.22
, pp. 261-264
-
-
Bardgett, R.D.1
Hobbs, P.J.2
Frostegårde, A.3
-
4
-
-
80053379323
-
Long-term land use effects on soil microbial community structure and function
-
Bissett A, Richardson AE, Baker G, Thrall PH (2011) Long-term land use effects on soil microbial community structure and function. Appl Soil Ecol 51: 66-78.
-
(2011)
Appl Soil Ecol
, vol.51
, pp. 66-78
-
-
Bissett, A.1
Richardson, A.E.2
Baker, G.3
Thrall, P.H.4
-
5
-
-
0031947934
-
Impacts of carbon and flooding on soil microbial communities: 23 phospholipid fatty acid profiles and substrate utilization patterns
-
Bossio DA, Scow KM (1998) Impacts of carbon and flooding on soil microbial communities: 23 phospholipid fatty acid profiles and substrate utilization patterns. Microb Ecol 35: 265-278.
-
(1998)
Microb Ecol
, vol.35
, pp. 265-278
-
-
Bossio, D.A.1
Scow, K.M.2
-
6
-
-
19944392939
-
Soil microbial community response to land use change in an agricultural landscape of western Kenya
-
Bossio DA, Girvan MS, Verchot L, Bullimore J, Borellil T, Albrecht A, Scow KM, Ball AS, Pretty JN, Osborn AM (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microb Ecol 49: 50-62.
-
(2005)
Microb Ecol
, vol.49
, pp. 50-62
-
-
Bossio, D.A.1
Girvan, M.S.2
Verchot, L.3
Bullimore, J.4
Borellil, T.5
Albrecht, A.6
Scow, K.M.7
Ball, A.S.8
Pretty, J.N.9
Osborn, A.M.10
-
7
-
-
0034898780
-
The structure of microbial communities in soil and the lasting impact of cultivation
-
Bucldey DH, Schmidt TM (2001) The structure of microbial communities in soil and the lasting impact of cultivation. Microb Ecol 42: 11-21.
-
(2001)
Microb Ecol
, vol.42
, pp. 11-21
-
-
Bucldey, D.H.1
Schmidt, T.M.2
-
8
-
-
68549122622
-
Comparative resistance and resilience of soil microbial communities and enzyme activities in adjacent native forest and agricultural soils
-
Chaer G, Fernandes M, Myrold D, Bottomley P (2009) Comparative resistance and resilience of soil microbial communities and enzyme activities in adjacent native forest and agricultural soils. Microb Ecol 58: 414-424.
-
(2009)
Microb Ecol
, vol.58
, pp. 414-424
-
-
Chaer, G.1
Fernandes, M.2
Myrold, D.3
Bottomley, P.4
-
9
-
-
43149093151
-
Vegetation cover of forest, shrub and pasture strongly influences soil bacterial community structure as revealed by 16S rRNA gene T-RFLP analysis
-
Chan OC, Casper P, Sha LQ, Feng ZL, Fu Y, Yang XD, Ulrich A, Zou XM (2008) Vegetation cover of forest, shrub and pasture strongly influences soil bacterial community structure as revealed by 16S rRNA gene T-RFLP analysis. FEMS Microbiol Ecol 64: 449-458.
-
(2008)
FEMS Microbiol Ecol
, vol.64
, pp. 449-458
-
-
Chan, O.C.1
Casper, P.2
Sha, L.Q.3
Feng, Z.L.4
Fu, Y.5
Yang, X.D.6
Ulrich, A.7
Zou, X.M.8
-
10
-
-
0033850862
-
Long-term impacts of agriculture on soil carbon and nitrogen in New England forests
-
Compton JE, Boone RD (2000) Long-term impacts of agriculture on soil carbon and nitrogen in New England forests. Ecology 81: 2314-2330.
-
(2000)
Ecology
, vol.81
, pp. 2314-2330
-
-
Compton, J.E.1
Boone, R.D.2
-
11
-
-
0024444791
-
Isolation and direct complete determination of entire genes
-
Edwards U, Rogall T, Blocker H, Emde M, Bottger EC (1989) Isolation and direct complete determination of entire genes. Nucleic Acids Res 17: 7843-7853.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
12
-
-
33646149166
-
Microbial community variation and its relationship with nitrogen mineralization in historically altered forests
-
Fraterrigo JM, Balser TC, Turner MG (2006) Microbial community variation and its relationship with nitrogen mineralization in historically altered forests. Ecology 87: 570-579.
-
(2006)
Ecology
, vol.87
, pp. 570-579
-
-
Fraterrigo, J.M.1
Balser, T.C.2
Turner, M.G.3
-
13
-
-
0029663947
-
The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil
-
Frostegård Å, Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22: 59-65.
-
(1996)
Biol Fertil Soils
, vol.22
, pp. 59-65
-
-
Frostegård, Å.1
Bååth, E.2
-
14
-
-
54449086625
-
Molecular detection of fungal communities in the Hawaiian marine sponges Suberites zeteki and Mycale armata
-
Gao Z, Li B, Zheng C, Wang G (2008) Molecular detection of fungal communities in the Hawaiian marine sponges Suberites zeteki and Mycale armata. Appl Environ Microb 74: 6091-6101.
-
(2008)
Appl Environ Microb
, vol.74
, pp. 6091-6101
-
-
Gao, Z.1
Li, B.2
Zheng, C.3
Wang, G.4
-
15
-
-
40249113897
-
Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?
-
Ge Y, He JZ, Zhu YG, Zhang JB, Xu ZH, Zhang LM, Zheng YM (2008a) Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies? ISME J 2: 254-264.
-
(2008)
ISME J
, vol.2
, pp. 254-264
-
-
Ge, Y.1
He, J.Z.2
Zhu, Y.G.3
Zhang, J.B.4
Xu, Z.H.5
Zhang, L.M.6
Zheng, Y.M.7
-
16
-
-
40449117321
-
Long-term fertilization regimes and diversity of an agricultural affect bacterial community structure soil in northern China
-
Ge Y, Zhang JB, Zhang LM, Yang M, He JZ (2008b) Long-term fertilization regimes and diversity of an agricultural affect bacterial community structure soil in northern China. J Soils Sediments 8: 43-50.
-
(2008)
J Soils Sediments
, vol.8
, pp. 43-50
-
-
Ge, Y.1
Zhang, J.B.2
Zhang, L.M.3
Yang, M.4
He, J.Z.5
-
17
-
-
77949289144
-
Carbon/nitrogen ratio as a major factor for predicting the effects of organic wastes on soil bacterial communities assessed by DNA-based molecular techniques
-
Ge Y, Chen CR, Xu ZH, Eldridge SM, Chan KY, He Y, He JZ (2010) Carbon/nitrogen ratio as a major factor for predicting the effects of organic wastes on soil bacterial communities assessed by DNA-based molecular techniques. Environ Sci Pollut Res 17: 807-815.
-
(2010)
Environ Sci Pollut Res
, vol.17
, pp. 807-815
-
-
Ge, Y.1
Chen, C.R.2
Xu, Z.H.3
Eldridge, S.M.4
Chan, K.Y.5
He, Y.6
He, J.Z.7
-
18
-
-
2442654454
-
Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens
-
Girvan MS, Bullimore J, Ball AS, Pretty JN, Osborn AM (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Appl Environ Microb 70: 2692-2701.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 2692-2701
-
-
Girvan, M.S.1
Bullimore, J.2
Ball, A.S.3
Pretty, J.N.4
Osborn, A.M.5
-
19
-
-
0035155176
-
The long-term effects of land-use history on nitrogen cycling in northern hardwood forests
-
Goodale CL, Aber JD (2001) The long-term effects of land-use history on nitrogen cycling in northern hardwood forests. Ecol Appl 11: 253-267.
-
(2001)
Ecol Appl
, vol.11
, pp. 253-267
-
-
Goodale, C.L.1
Aber, J.D.2
-
20
-
-
0019172531
-
Compaction of forest soils. A review
-
Greacen EL, Sands R (1980) Compaction of forest soils. A review. Aust J Soil Res 18: 163-118.
-
(1980)
Aust J Soil Res
, vol.18
, pp. 118-163
-
-
Greacen, E.L.1
Sands, R.2
-
21
-
-
0022505895
-
Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholera: increases in the translcis ratio and proportions of cyclopropyl fatty acids
-
Guekert JB, Hood MA, White DC (1986) Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholera: increases in the translcis ratio and proportions of cyclopropyl fatty acids. Appl Environ Microb 52: 794-801.
-
(1986)
Appl Environ Microb
, vol.52
, pp. 794-801
-
-
Guekert, J.B.1
Hood, M.A.2
White, D.C.3
-
22
-
-
20344381285
-
Analyses of soil fungal communities in adjacent natural forest and hoop pine plantation ecosystems of subtropical Australia using molecular approaches based on 18S rRNA genes
-
He JZ, Xu ZH, Hughes J (2005) Analyses of soil fungal communities in adjacent natural forest and hoop pine plantation ecosystems of subtropical Australia using molecular approaches based on 18S rRNA genes. FEMS Microbiol Lett 247: 91-100.
-
(2005)
FEMS Microbiol Lett
, vol.247
, pp. 91-100
-
-
He, J.Z.1
Xu, Z.H.2
Hughes, J.3
-
23
-
-
54249165830
-
Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches
-
He JZ, Zheng Y, Chen CR, He YQ, Zhang LM (2008) Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches. J Soils Sediments 8: 349-358.
-
(2008)
J Soils Sediments
, vol.8
, pp. 349-358
-
-
He, J.Z.1
Zheng, Y.2
Chen, C.R.3
He, Y.Q.4
Zhang, L.M.5
-
24
-
-
77954033129
-
Linking soil bacterial diversity to ecosystem multifunctionality using backward-elimination boosted tree analysis
-
He JZ, Ge Y, Xu ZH, Chen CR (2009) Linking soil bacterial diversity to ecosystem multifunctionality using backward-elimination boosted tree analysis. J Soils Sediments 9: 547-554.
-
(2009)
J Soils Sediments
, vol.9
, pp. 547-554
-
-
He, J.Z.1
Ge, Y.2
Xu, Z.H.3
Chen, C.R.4
-
25
-
-
84865969236
-
Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils
-
He JZ, Hu HW, Zhang LM (2012) Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils. Soil Biol Biochem 55: 146-154.
-
(2012)
Soil Biol Biochem
, vol.55
, pp. 146-154
-
-
He, J.Z.1
Hu, H.W.2
Zhang, L.M.3
-
26
-
-
0026358720
-
Whole-tree Clearcutting effects on Soil Organic Matter Pools and Horizons in a Northern Hardwood Forest Soil
-
Johnson CE, Johnson AH, Huntington TG, Siccama TG (1991) Whole-tree Clearcutting effects on Soil Organic Matter Pools and Horizons in a Northern Hardwood Forest Soil. Soil Sci Soc Am 55: 497-502.
-
(1991)
Soil Sci Soc Am
, vol.55
, pp. 497-502
-
-
Johnson, C.E.1
Johnson, A.H.2
Huntington, T.G.3
Siccama, T.G.4
-
27
-
-
33745803183
-
Methods for evaluating human impact on soil microorganisms based on their activity, biomass, and diversity in agricultural soils
-
Joergensen RG, Emmerling C (2006) Methods for evaluating human impact on soil microorganisms based on their activity, biomass, and diversity in agricultural soils. J Plant Nutr Soil Sci 169: 295-309.
-
(2006)
J Plant Nutr Soil Sci
, vol.169
, pp. 295-309
-
-
Joergensen, R.G.1
Emmerling, C.2
-
28
-
-
77649170316
-
Effects of Cd and Pb on soil microbial community structure and activities
-
Khan S, Hesham AE, Qiao M, Rehman S, He JZ (2010) Effects of Cd and Pb on soil microbial community structure and activities. Environ Sci Pollut Res 17: 288-296.
-
(2010)
Environ Sci Pollut Res
, vol.17
, pp. 288-296
-
-
Khan, S.1
Hesham, A.E.2
Qiao, M.3
Rehman, S.4
He, J.Z.5
-
29
-
-
0036729772
-
2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis
-
2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis. Appl Environ Microb 68: 4370-4376.
-
(2002)
Appl Environ Microb
, vol.68
, pp. 4370-4376
-
-
Klamer, M.1
Roberts, M.S.2
Levine, L.H.3
Drake, B.G.4
Garland, J.L.5
-
30
-
-
49249124904
-
The influence of soil properties on the structure of bacterial and fungal communities across land-use types
-
Lauber CL, Strickland MS, Bradford MA, Fierer N (2008) The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biol Biochem 40: 2407-2415.
-
(2008)
Soil Biol Biochem
, vol.40
, pp. 2407-2415
-
-
Lauber, C.L.1
Strickland, M.S.2
Bradford, M.A.3
Fierer, N.4
-
31
-
-
84875392295
-
Succession of plant and soil microbial communities with restoration of abandoned land in the Loess Plateau, China
-
Li JJ, Zheng YM, Yan JX, Li HJ, He JZ (2013) Succession of plant and soil microbial communities with restoration of abandoned land in the Loess Plateau, China. J Soils Sediments 13: 760-769.
-
(2013)
J Soils Sediments
, vol.13
, pp. 760-769
-
-
Li, J.J.1
Zheng, Y.M.2
Yan, J.X.3
Li, H.J.4
He, J.Z.5
-
32
-
-
67650081180
-
Physiological, biochemical and molecular responses of the soil microbial community after afforestation of pastures with Pinus radiate
-
Macdonald CA, Thomas N, Robinson L, Tate KR, Ross DJ, Dando J, Singh BK (2009) Physiological, biochemical and molecular responses of the soil microbial community after afforestation of pastures with Pinus radiate. Soil Biol Biochem 41: 1642-1651.
-
(2009)
Soil Biol Biochem
, vol.41
, pp. 1642-1651
-
-
Macdonald, C.A.1
Thomas, N.2
Robinson, L.3
Tate, K.R.4
Ross, D.J.5
Dando, J.6
Singh, B.K.7
-
33
-
-
0034767175
-
Comparative denaturing gradient gel electrophoresis analysis of fungal communities associated with whole plant corn silage
-
May LA, Smiley B, Schmidt MG (2001) Comparative denaturing gradient gel electrophoresis analysis of fungal communities associated with whole plant corn silage. Can J Microbiol 47: 829-841.
-
(2001)
Can J Microbiol
, vol.47
, pp. 829-841
-
-
May, L.A.1
Smiley, B.2
Schmidt, M.G.3
-
34
-
-
79951549570
-
Multivariate approach to characterizing soil microbial communities in pristine and agricultural sites in Northwest Argentina
-
Montecchiaa MS, Correaa OS, Soriaa MA, Freyb SD, Garcíaa AF, Garlandc JL (2011) Multivariate approach to characterizing soil microbial communities in pristine and agricultural sites in Northwest Argentina. Appl Soil Ecol 47: 176-183.
-
(2011)
Appl Soil Ecol
, vol.47
, pp. 176-183
-
-
Montecchiaa, M.S.1
Correaa, O.S.2
Soriaa, M.A.3
Freyb, S.D.4
Garcíaa, A.F.5
Garlandc, J.L.6
-
36
-
-
31144459025
-
Does cropping modify the decomposition function and the diversity of the soil microbial community of tropical fallow soil?
-
Sall SN, Masse D, Ndour NYB, Chotte JL (2006) Does cropping modify the decomposition function and the diversity of the soil microbial community of tropical fallow soil? Appl Soil Ecol 31: 211-219.
-
(2006)
Appl Soil Ecol
, vol.31
, pp. 211-219
-
-
Sall, S.N.1
Masse, D.2
Ndour, N.Y.B.3
Chotte, J.L.4
-
37
-
-
33846500257
-
Objective criteria to assess representativity of soil fungal community profiles
-
Schwarzenbach K, Enkerli J, Widmer F (2007) Objective criteria to assess representativity of soil fungal community profiles. J Microbiol Meth 68: 358-366.
-
(2007)
J Microbiol Meth
, vol.68
, pp. 358-366
-
-
Schwarzenbach, K.1
Enkerli, J.2
Widmer, F.3
-
38
-
-
0033760479
-
Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
-
Suzuki MT, Taylor LT, DeLong EF (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl Environ Microb 66: 4605-4614.
-
(2000)
Appl Environ Microb
, vol.66
, pp. 4605-4614
-
-
Suzuki, M.T.1
Taylor, L.T.2
DeLong, E.F.3
-
39
-
-
0036270789
-
Microbial diversity and function in soil: from genes to ecosystems
-
Torsvik V, Øvreås L (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 5: 240-245.
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 240-245
-
-
Torsvik, V.1
Øvreås, L.2
-
40
-
-
2942651148
-
Ecological linkages between aboveground and belowground biota
-
Wardle DA, Bardgett RD, Klironomos JN, Setälä H, van der Putten WH, Wall DH (2004) Ecological linkages between aboveground and belowground biota. Science 304: 1629-1633.
-
(2004)
Science
, vol.304
, pp. 1629-1633
-
-
Wardle, D.A.1
Bardgett, R.D.2
Klironomos, J.N.3
Setälä, H.4
van der Putten, W.H.5
Wall, D.H.6
-
41
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (Eds.), San Diego: Academic
-
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-324.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 315-324
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
42
-
-
77956190767
-
Multivariate analysis of chemical and microbial properties in histosols as influenced by land-use types
-
Ye R, Wright AL (2010) Multivariate analysis of chemical and microbial properties in histosols as influenced by land-use types. Soil Tillage Res 110: 94-100.
-
(2010)
Soil Tillage Res
, vol.110
, pp. 94-100
-
-
Ye, R.1
Wright, A.L.2
-
43
-
-
78649522040
-
Putative ammonia-oxidizing bacteria and Archaea in an acidic red soil with different land utilization patterns
-
Ying JY, Zhang LM, He JZ (2010) Putative ammonia-oxidizing bacteria and Archaea in an acidic red soil with different land utilization patterns. Environ Microb Rep 2: 304-312.
-
(2010)
Environ Microb Rep
, vol.2
, pp. 304-312
-
-
Ying, J.Y.1
Zhang, L.M.2
He, J.Z.3
-
44
-
-
0032946688
-
Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review
-
Zelles L (1999) Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biol Fertil Soils 29: 111-129.
-
(1999)
Biol Fertil Soils
, vol.29
, pp. 111-129
-
-
Zelles, L.1
-
45
-
-
84859895036
-
Ammonia-oxidizing Archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils
-
Zhang LM, Hu HW, Shen JP, He JZ (2012) Ammonia-oxidizing Archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils. ISME J 6: 1032-1045.
-
(2012)
ISME J
, vol.6
, pp. 1032-1045
-
-
Zhang, L.M.1
Hu, H.W.2
Shen, J.P.3
He, J.Z.4
-
46
-
-
78649966649
-
Do land utilization patterns affect methanotrophic communities in a Chinese upland red soil?
-
Zheng Y, Liu XZ, Zhang LM, Zhou ZF, He JZ (2010) Do land utilization patterns affect methanotrophic communities in a Chinese upland red soil? J Environ Sci 22: 1936-1943.
-
(2010)
J Environ Sci
, vol.22
, pp. 1936-1943
-
-
Zheng, Y.1
Liu, X.Z.2
Zhang, L.M.3
Zhou, Z.F.4
He, J.Z.5
-
47
-
-
84872261238
-
Immediate effects of nitrogen, phosphorus and potassium amendments on the methanotrophic activity and abundance in a Chinese paddy soil under short-term incubation experiment
-
Zheng Y, Zhang LM, He JZ (2013) Immediate effects of nitrogen, phosphorus and potassium amendments on the methanotrophic activity and abundance in a Chinese paddy soil under short-term incubation experiment. J Soils Sediments 13: 189-196.
-
(2013)
J Soils Sediments
, vol.13
, pp. 189-196
-
-
Zheng, Y.1
Zhang, L.M.2
He, J.Z.3
|