Heat-shock protein 70 gene sequencing for leishmania species typing in european tropical infectious disease clinics

Eurosurveillance

Volumn 18, Issue 30, 2013, Pages

  Van der Auwera, G ^a   Maes, I ^a   De Doncker, S ^a   Ravel, C ^b   Cnops, L ^a   Van Esbroeck, M ^a   Van Gompel, A ^a   Clerinx, J ^a   Dujardin, J C ^c  

^a INSTITUTE OF TROPICAL MEDICINE   (Belgium)

^b UNIV MONTPELLIER   (France)

^c UNIVERSITY OF ANTWERP   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 70;

ARTICLE; CLINICAL ARTICLE; GENE; GENE SEQUENCE; HEAT SHOCK PROTEIN 70 GENE; HUMAN; LEISHMANIA; MOLECULAR TYPING; MULTILOCUS ENZYME ELECTROPHORESIS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE;

EID: 84880813182     PISSN: 1025496X     EISSN: 15607917     Source Type: Journal    
DOI: 10.2807/1560-7917.ES2013.18.30.20543     Document Type: Article

References (46)

1. Bailey MS, Lockwood DN. Cutaneous leishmaniasis. Clin Dermatol. 2007;25(2):203-11. http://dx.doi.org/10.1016/j.clindermatol.2006.05.008PMid:17350500
2. Bailey MS, Green AD, Ellis CJ, O'Dempsey TJ, Beeching NJ, Lockwood DN, et al. Clinical guidelines for the management of cutaneous leishmaniasis in British military personnel. J R Army Med Corps. 2005;151(2):73-80. http://dx.doi.org/10.1136/jramc-151-02-03PMid:16097110
3. Schwartz E, Hatz C, Blum J. New world cutaneous leishmaniasis in travellers. Lancet Infect Dis. 2006;6(6):342-9.http://dx.doi.org/10.1016/S1473-3099(06)70492-3
4. Blum JA, Hatz CF. Treatment of cutaneous leishmaniasis in travelers 2009. J Travel Med. 2009;16(2):123-31. http://dx.doi.org/10.1111/j.1708-8305.2008.00286.xPMid:19335813
5. Mitropoulos P, Konidas P, Durkin-Konidas M. New World cutaneous leishmaniasis: updated review of current and future diagnosis and treatment. J Am Acad Dermatol. 2010;63(2):309-22. http://dx.doi.org/10.1016/j.jaad.2009.06.088 PMid:20303613
6. Goto H, Lindoso JA. Current diagnosis and treatment of cutaneous and mucocutaneous leishmaniasis. Expert Rev Anti Infect Ther. 2010;8(4):419-33. http://dx.doi.org/10.1586/eri.10.19PMid:20377337
7. Buffet PA, Rosenthal E, Gangneux JP, Lightburne E, Couppie P, Morizot G, et al. Therapy of leishmaniasis in France: consensus on proposed guidelines. Presse Med. 2011;40(2):173-84. http://dx.doi.org/10.1016/j.lpm.2010.09.023PMid:21106333
8. Boecken G, Sunderkotter C, Bogdan C, Weitzel T, Fischer M, Muller A, et al. Diagnosis and therapy of cutaneous and mucocutaneous leishmaniasis in Germany. J Dtsch Dermatol Ges. 2011;9 Suppl 8:1-51. http://dx.doi.org/10.1111/j.1610-0379.2011.07820.xPMid:22050890
9. Fraga J, Montalvo AM, De Doncker S, Dujardin JC, Van der Auwera G. Phylogeny of Leishmania species based on the heat-shock protein 70 gene. Infect Genet Evol. 2010;10(2):238-45.http://dx.doi.org/10.1016/j.meegid.2009.11.007PMid:19913110
10. Fraga J, Veland N, Montalvo AM, Praet N, Boggild AK, Valencia BM, et al. Accurate and rapid species typing from cutaneous and mucocutaneous leishmaniasis lesions of the New World. Diagn Microbiol Infect Dis. 2012;74(2):142-50. ttp://dx.doi.org/10.1016/j.diagmicrobio.2012.06.010 PMid:22819605
11. Montalvo AM, Fraga J, Monzote L, Montano I, De Doncker S, Dujardin JC, et al. Heat-shock protein 70 PCR-RFLP: a universal simple tool for Leishmania species discrimination in the New and Old World. Parasitology. 2010;137(8):1159-68. http://dx.doi.org/10.1017/S0031182010000089PMid:20441679
12. Montalvo AM, Fraga J, Maes I, Dujardin JC, Van der Auwera G. Three new sensitive and specific heat-shock protein 70 PCRs for global Leishmania species identification. Eur J Clin Microbiol Infect Dis. 2012;31(7):1453-61. http://dx.doi.org/10.1007/s10096-011-1463-zPMid:22083340
13. Garcia L, Kindt A, Bermudez H, Llanos-Cuentas A, De Doncker S, Arévalo J, et al. Culture-independent species typing of neotropical Leishmania for clinical validation of a PCR-based assay targeting heat shock protein 70 genes. J Clin Microbiol. 2004;42(5):2294-7. http://dx.doi.org/10.1128/JCM.42.5.2294-2297.2004PMid:15131217 PMCid:PMC404633
14. Marfurt J, Nasereddin A, Niederwieser I, Jaffe CL, Beck HP, Felger I. Identification and differentiation of Leishmania species in clinical samples by PCR amplification of the miniexon sequence and subsequent restriction fragment length polymorphism analysis. J Clin Microbiol. 2003;41(7):3147-53. http://dx.doi.org/10.1128/JCM.41.7.3147-3153.2003PMid:12843055 PMCid:PMC165364
15. Schönian G, Nasereddin A, Dinse N, Schweynoch C, Schallig HD, Presber W, et al. PCR diagnosis and characterization of Leishmania in local and imported clinical samples. Diagn Microbiol Infect Dis. 2003;47(1):349-58. http://dx.doi.org/10.1016/S0732-8893(03)00093-2
16. Stevenson LG, Fedorko DP, Zelazny AM. An enhanced method for the identification of Leishmania spp. using real-time polymerase chain reaction and sequence analysis of the 7SL RNA gene region. Diagn Microbiol Infect Dis. 2010;66(4):432-5. http://dx.doi.org/10.1016/j.diagmicrobio.2009.11.005PMid:20226334 PMCid:PMC2856081
17. Roelfsema JH, Nozari N, Herremans T, Kortbeek LM, Pinelli E. Evaluation and improvement of two PCR targets in molecular typing of clinical samples of Leishmania patients. Exp Parasitol. 2011;127(1):36-41. http://dx.doi.org/10.1016/j.exppara.2010.06.024 PMid:20599989
18. Folgueira C, Ca-avate C, Chicharro C, Requena JM. Genomic organization and expression of the HSP70 locus in New and Old World Leishmania species. Parasitology. 2007;134(Pt 3):369-77. http://dx.doi.org/10.1017/S0031182006001570 PMid:17054823
19. Odiwuor S, Veland N, Maes I, Arévalo J, Dujardin JC, Van der Auwera G. Evolution of the Leishmania braziliensis species complex from amplified fragment length polymorphisms, and clinical implications. Infect Genet Evol. 2012;12(8):1994-2002. http://dx.doi.org/10.1016/j.meegid.2012.03.028 PMid:22516226
20. Deborggraeve S, Laurent T, Espinosa D, Van der Auwera G, Mbuchi M, Wasunna M, et al. A simplified and standardized polymerase chain reaction format for the diagnosis of leishmaniasis. J Infect Dis. 2008;198(10):1565-72. http://dx.doi.org/10.1086/592509PMid:18816188
21. Odiwuor S, Muia A, Magiri C, Maes I, Kirigi G, Dujardin JC, et al. Identification of Leishmania tropica from micro-foci of cutaneous leishmaniasis in the Kenyan Rift Valley. Pathog Glob Health. 2012;106(3):159-65. http://dx.doi.org/10.1179/2047773212Y.0000000015PMid:23265373
22. DNA Baser Sequence Assembler. Nucleotide ambiguity code. Pitesti: Heracle BioSoft S.R.L. Available from: http://www.dnabaser.com/articles/IUPAC%20ambiguity%20codes.html
23. Zhang CY, Lu XJ, Du XQ, Jian J, Shu L, Ma Y. Phylogenetic and evolutionary analysis of Chinese Leishmania isolates based on multilocus sequence typing. PLoS One. 2013;8(4):e63124. http://dx.doi.org/10.1371/journal.pone.0063124PMid:23646184 PMCid:PMC3639960
24. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-9. http://dx.doi.org/10.1093/molbev/msr121PMid:21546353 PMCid:PMC3203626
25. Mauricio IL, Stothard JR, Miles MA. The strange case of Leishmania chagasi. Parasitol Today. 2000;16(5):188-9. http://dx.doi.org/10.1016/S0169-4758(00)01637-9
26. Lukeš J, Mauricio IL, Schönian G, Dujardin JC, Soteriadou K, Dedet JP, et al. Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy. Proc Natl Acad Sci USA. 2007;104(22):9375-80. http://dx.doi.org/10.1073/pnas.0703678104 PMid:17517634 PMCid:PMC1890502
27. Ba-uls AL, Hide M, Tibayrenc M. Evolutionary genetics and molecular diagnosis of Leishmania species. Trans R Soc Trop Med Hyg. 2002;96 Suppl 1:S9-S13. http://dx.doi.org/10.1016/S0035-9203(02)90045-3
28. Bañuls AL, Jonquieres R, Guerrini F, Le Pont F, Barrera C, Espinel I, et al. Genetic analysis of Leishmania parasites in Ecuador: are Leishmania (Viannia) panamensis and Leishmania (V.) guyanensis distinct taxa? Am J Trop Med Hyg. 1999;61(5):838-45.
29. Cupolillo E, Grimaldi G Jr, Momen H. A general classification of New World Leishmania using numerical zymotaxonomy. Am J Trop Med Hyg. 1994;50(3):296-311.PMid:8147488
30. Srivastava P, Prajapati VK, Vanaerschot M, Van der Auwera G, Dujardin JC, Sundar S. Detection of Leptomonas sp. parasites in clinical isolates of Kala-azar patients from India. Infect Genet Evol. 2010;10(7):1145-50. http://dx.doi.org/10.1016/j.meegid.2010.07.009PMid:20633704 PMCid:PMC2933273
31. Odiwuor S, Vuylsteke M, De Doncker S, Maes I, Mbuchi M, Dujardin JC, et al. Leishmania AFLP: paving the way towards improved molecular assays and markers of diversity. Infect Genet Evol. 2011;11(5):960-7. http://dx.doi.org/10.1016/j.meegid.2011.03.008PMid:21439405
32. Oddone R, Schweynoch C, Schönian G, de Sousa CS, Cupolillo E, Espinosa D, et al. Development of a multilocus microsatellite typing approach for discriminating strains of Leishmania (Viannia) species. J Clin Microbiol. 2009;47(9):2818-25. http://dx.doi.org/10.1128/JCM.00645-09PMid:19587302 PMCid:PMC2738093
33. Veland N, Boggild AK, Valencia C, Valencia BM, Llanos-Cuentas A, Van der Auwera G, et al. Leishmania (Viannia) species identification on clinical samples from cutaneous leishmaniasis patients in Peru: assessment of a molecular stepwise approach. J Clin Microbiol. 2012;50(2):495-8. http://dx.doi.org/10.1128/JCM.05061-11PMid:22116151 PMCid:PMC3264178
34. Nolder D, Roncal N, Davies CR, Llanos-Cuentas A, Miles MA. Multiple hybrid genotypes of Leishmania (Viannia) in a focus of mucocutaneous leishmaniasis. Am J Trop Med Hyg. 2007;76(3):573-8. PMid:17360886
35. Bañuls AL, Dujardin JC, Guerrini F, De Doncker S, Jacquet D, Arevalo J, et al. Is Leishmania (Viannia) peruviana a distinct species? A MLEE/RAPD evolutionary genetics answer. J Eukaryot Microbiol. 2000;47(3):197-207. http://dx.doi.org/10.1111/j.1550-7408.2000.tb00039.x
36. World Health Organization (WHO). Control of the leishmaniasis: report of a meeting of the WHO Expert Committee on the Control of Leishmaniases, Geneva, 22-26 March 2010. Geneva, Switzerland: WHO; 2010. Available from: http://whqlibdoc.who.int/trs/WHO_TRS_949_eng.pdf
37. Belli AA, Miles MA, Kelly JM. A putative Leishmania panamensis/Leishmania braziliensis hybrid is a causative agent of human cutaneous leishmaniasis in Nicaragua. Parasitology. 1994;109(Pt 4):435-42. http://dx.doi.org/10.1017/S0031182000080689PMid:7800411
38. Odiwuor S, De Doncker S, Maes I, Dujardin JC, Van der Auwera G. Natural Leishmania donovani/Leishmania aethiopica hybrids identified from Ethiopia. Infect Genet Evol. 2011;11(8):2113-8. http://dx.doi.org/10.1016/j.meegid.2011.04.026PMid:21558020
39. Ravel C, Cortes S, Pratlong F, Morio F, Dedet JP, Campino L. First report of genetic hybrids between two very divergent Leishmania species: Leishmania infantum and Leishmania major. Int J Parasitol. 2006;36(13):1383-8. http://dx.doi.org/10.1016/j.ijpara.2006.06.019PMid:16930606
40. Delgado O, Cupolillo E, Bonfante-Garrido R, Silva S, Belfort E, Grimaldi JG, et al. Cutaneous leishmaniasis in Venezuela caused by infection with a new hybrid between Leishmania (Viannia) braziliensis and L. (V.) guyanensis. Mem Inst Oswaldo Cruz. 1997;92(5):581-2. http://dx.doi.org/10.1590/S0074-02761997000500002PMid:9566221
41. Kuhls K, Keilonat L, Ochsenreither S, Schaar M, Schweynoch C, Presber W, et al. Multilocus microsatellite typing (MLMT) reveals genetically isolated populations between and within the main endemic regions of visceral leishmaniasis. Microbes Infect. 2007;9(3):334-43. http://dx.doi.org/10.1016/j.micinf.2006.12.009PMid:17307010
42. Zemanová E, Jirku M, Mauricio IL, Horák A, Miles MA, Lukeš J. The Leishmania donovani complex: genotypes of five metabolic enzymes (ICD, ME, MPI, G6PDH, and FH), new targets for multilocus sequence typing. Int J Parasitol. 2007;37(2):149-60. http://dx.doi.org/10.1016/j.ijpara.2006.08.008PMid:17027989
43. Downing T, Imamura H, Decuypere S, Clark TG, Coombs GH, Cotton JA, et al. Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Res. 2011;21(12):2143-56. http://dx.doi.org/10.1101/gr.123430.111PMid:22038251 PMCid:PMC3227103
44. Van der Auwera G, Fraga J, Montalvo AM, Dujardin JC. Leishmania taxonomy up for promotion? Trends Parasitol. 2011;27(2):49-50. http://dx.doi.org/10.1016/j.pt.2010.11.007PMid:21147036
45. da Silva LA, dos Santos de Sousa C, da Graça GC, Porrozzi R, Cupolillo E. Sequence analysis and PCR-RFLP profiling of the hsp70 gene as a valuable tool for identifying Leishmania species associated with human leishmaniasis in Brazil. Infect Genet Evol. 2010;10(1):77-83. http://dx.doi.org/10.1016/j.meegid.2009.11.001PMid:19913112
46. Alvar J, Velez ID, Bern C, Herrero M, Desjeux P, Cano J, et al. Leishmaniasis Worldwide and Global Estimates of Its Incidence. PLoS One. 2012;7(5):e35671. http://dx.doi.org/10.1371/journal.pone.0035671PMid:22693548 PMCid:PMC3365071