-
1
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi, Y., Lan, F., Matson, C., Mulligan, P., Whetstine, J. R., Cole, P. A., Casero, R. A., and Shi, Y. (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1 Cell 119, 941-953
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
Lan, F.2
Matson, C.3
Mulligan, P.4
Whetstine, J.R.5
Cole, P.A.6
Casero, R.A.7
Shi, Y.8
-
2
-
-
41549132495
-
LSD1: Oxidative chemistry for multifaceted functions in chromatin regulation
-
Forneris, F., Binda, C., Battaglioli, E., and Mattevi, A. (2008) LSD1: oxidative chemistry for multifaceted functions in chromatin regulation Trends Biochem. Sci. 33, 181-189
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 181-189
-
-
Forneris, F.1
Binda, C.2
Battaglioli, E.3
Mattevi, A.4
-
3
-
-
84862777766
-
Inhibition of the LSD1 (KDM1A) demethylase reactivates the all-trans-retinoic acid differentiation pathway in acute myeloid leukemia
-
Schenk, T., Chen, W. C., Göllner, S., Howell, L., Jin, L., Hebestreit, K., Klein, H. U., Popescu, A. C., Burnett, A., Mills, K., Casero, R. A., Jr., Marton, L., Woster, P., Minden, M. D., Dugas, M., Wang, J. C., Dick, J. E., Müller-Tidow, C., Petrie, K., and Zelent, A. (2012) Inhibition of the LSD1 (KDM1A) demethylase reactivates the all-trans-retinoic acid differentiation pathway in acute myeloid leukemia Nat. Med. 18, 605-611
-
(2012)
Nat. Med.
, vol.18
, pp. 605-611
-
-
Schenk, T.1
Chen, W.C.2
Göllner, S.3
Howell, L.4
Jin, L.5
Hebestreit, K.6
Klein, H.U.7
Popescu, A.C.8
Burnett, A.9
Mills, K.10
Casero, Jr.R.A.11
Marton, L.12
Woster, P.13
Minden, M.D.14
Dugas, M.15
Wang, J.C.16
Dick, J.E.17
Müller-Tidow, C.18
Petrie, K.19
Zelent, A.20
more..
-
4
-
-
84870375316
-
Histone lysine methylation dynamics: Establishment, regulation, and biological impact
-
Black, J. C., Van Rechem, C., and Whetstine, J. R. (2012) Histone lysine methylation dynamics: Establishment, regulation, and biological impact Mol. Cell 48, 491-507
-
(2012)
Mol. Cell
, vol.48
, pp. 491-507
-
-
Black, J.C.1
Van Rechem, C.2
Whetstine, J.R.3
-
5
-
-
79958247128
-
Enantioselective synthesis of tranylcypromine analogues as lysine demethylase (LSD1) inhibitors
-
Benelkebir, H., Hodgkinson, C., Duriez, P. J., Hayden, A., Bullied, R., Crabb, S. J., Packham, G., and Ganesan, A. (2011) Enantioselective synthesis of tranylcypromine analogues as lysine demethylase (LSD1) inhibitors Bioorg. Med. Chem. 19, 3709-3716
-
(2011)
Bioorg. Med. Chem.
, vol.19
, pp. 3709-3716
-
-
Benelkebir, H.1
Hodgkinson, C.2
Duriez, P.J.3
Hayden, A.4
Bullied, R.5
Crabb, S.J.6
Packham, G.7
Ganesan, A.8
-
6
-
-
82655179979
-
Novel histone demethylase LSD1 inhibitors selectively target cancer cells with pluripotent stem cell properties
-
Wang, J., Lu, F., Ren, Q., Sun, H., Xu, Z., Lan, R., Liu, Y., Ward, D., Quan, J., Ye, T., and Zhang, H. (2011) Novel histone demethylase LSD1 inhibitors selectively target cancer cells with pluripotent stem cell properties Cancer Res. 71, 7238-7249
-
(2011)
Cancer Res.
, vol.71
, pp. 7238-7249
-
-
Wang, J.1
Lu, F.2
Ren, Q.3
Sun, H.4
Xu, Z.5
Lan, R.6
Liu, Y.7
Ward, D.8
Quan, J.9
Ye, T.10
Zhang, H.11
-
7
-
-
84867091498
-
Impairment of prostate cancer cell growth by a selective and reversible lysine-specific demethylase 1 inhibitor
-
Willmann, D., Lim, S., Wetzel, S., Metzger, E., Jandausch, A., Wilk, W., Jung, M., Forne, I., Imhof, A., Janzer, A., Kirfel, J., Waldmann, H., Schule, R., and Buettner, R. (2012) Impairment of prostate cancer cell growth by a selective and reversible lysine-specific demethylase 1 inhibitor Int. J. Cancer 131, 2704-2709
-
(2012)
Int. J. Cancer
, vol.131
, pp. 2704-2709
-
-
Willmann, D.1
Lim, S.2
Wetzel, S.3
Metzger, E.4
Jandausch, A.5
Wilk, W.6
Jung, M.7
Forne, I.8
Imhof, A.9
Janzer, A.10
Kirfel, J.11
Waldmann, H.12
Schule, R.13
Buettner, R.14
-
8
-
-
77953107054
-
The SNAG domain of Snail1 functions as a molecular hook for recruiting lysine-specific demethylase 1
-
Lin, Y., Wu, Y., Li, J., Dong, C., Ye, X., Chi, Y. I., Evers, B. M., and Zhou, B. P. (2010) The SNAG domain of Snail1 functions as a molecular hook for recruiting lysine-specific demethylase 1 EMBO J. 29, 1803-1816
-
(2010)
EMBO J.
, vol.29
, pp. 1803-1816
-
-
Lin, Y.1
Wu, Y.2
Li, J.3
Dong, C.4
Ye, X.5
Chi, Y.I.6
Evers, B.M.7
Zhou, B.P.8
-
9
-
-
66449098550
-
Evolutionary history of the Snail/Scratch superfamily
-
Barrallo-Gimeno, A. and Nieto, M. A. (2009) Evolutionary history of the Snail/Scratch superfamily Trends Genet. 25, 248-252
-
(2009)
Trends Genet.
, vol.25
, pp. 248-252
-
-
Barrallo-Gimeno, A.1
Nieto, M.A.2
-
10
-
-
79551718687
-
Molecular mimicry and ligand recognition in binding and catalysis by the histone demethylase LSD1-CoREST complex
-
Baron, R., Binda, C., Tortorici, M., McCammon, J. A., and Mattevi, A. (2011) Molecular mimicry and ligand recognition in binding and catalysis by the histone demethylase LSD1-CoREST complex Structure 19, 212-220
-
(2011)
Structure
, vol.19
, pp. 212-220
-
-
Baron, R.1
Binda, C.2
Tortorici, M.3
McCammon, J.A.4
Mattevi, A.5
-
11
-
-
0001422048
-
Positional preference of proline in alpha-helices
-
Kim, M. K. and Kang, Y. K. (1999) Positional preference of proline in alpha-helices Protein Sci. 8, 1492-1499
-
(1999)
Protein Sci.
, vol.8
, pp. 1492-1499
-
-
Kim, M.K.1
Kang, Y.K.2
-
12
-
-
34547132094
-
Structural basis of LSD1-CoREST selectivity in histone H3 recognition
-
Forneris, F., Binda, C., Adamo, A., Battaglioli, E., and Mattevi, A. (2007) Structural basis of LSD1-CoREST selectivity in histone H3 recognition J. Biol. Chem. 282, 20070-20074
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20070-20074
-
-
Forneris, F.1
Binda, C.2
Adamo, A.3
Battaglioli, E.4
Mattevi, A.5
-
13
-
-
33748518255
-
Comparison of multiple Amber force fields and development of improved protein backbone parameters
-
Hornak, V., Abel, R., Okur, A., Strockbine, B., Roitberg, A., and Simmerling, C. (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters Proteins 65, 712-725
-
(2006)
Proteins
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
14
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Okamoto, Y. S. Y. (1999) Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314, 141-151
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Okamoto, Y.S.Y.1
-
15
-
-
0037934616
-
Understanding folding and design: Replica-exchange simulations of ″trp-cage″ miniproteins
-
Pitera, J. W. and Swope, W. (2003) Understanding folding and design: replica-exchange simulations of ″Trp-cage″ miniproteins Proc. Natl. Acad. Sci. U.S.A. 100, 7587-7592
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 7587-7592
-
-
Pitera, J.W.1
Swope, W.2
-
16
-
-
84871956221
-
Inhibiting interactions of lysine demethylase LSD1 with Snail/Slug blocks cancer cell invasion
-
Ferrari-Amorotti, G., Fragliasso, V., Esteki, R., Prudente, Z., Soliera, A. R., Cattelani, S., Manzotti, G., Grisendi, G., Dominici, M., Pieraccioli, M., RaschellaÌ, G., Claudia, C., Colombo, M. P., and Calabretta, B. (2012) Inhibiting interactions of lysine demethylase LSD1 with Snail/Slug blocks cancer cell invasion Cancer Res. 73, 235-245
-
(2012)
Cancer Res.
, vol.73
, pp. 235-245
-
-
Ferrari-Amorotti, G.1
Fragliasso, V.2
Esteki, R.3
Prudente, Z.4
Soliera, A.R.5
Cattelani, S.6
Manzotti, G.7
Grisendi, G.8
Dominici, M.9
Pieraccioli, M.10
Raschellaì, G.11
Claudia, C.12
Colombo, M.P.13
Calabretta, B.14
-
17
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., Keegan, R. M., Krissinel, E. B., Leslie, A. G., McCoy, A., McNicholas, S. J., Murshudov, G. N., Pannu, N. S., Potterton, E. A., Powell, H. R., Read, R. J., Vagin, A., and Wilson, K. S. (2011) Overview of the CCP4 suite and current developments Acta Crystallogr., Sect. D: Biol. Crystallogr. 67, 235-242
-
(2011)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.9
McCoy, A.10
McNicholas, S.J.11
Murshudov, G.N.12
Pannu, N.S.13
Potterton, E.A.14
Powell, H.R.15
Read, R.J.16
Vagin, A.17
Wilson, K.S.18
-
18
-
-
84862614975
-
-
Case, D. A., Darden, T. E., Cheatham, C. L., Simmerling, J., Wang, R. E., and Duke, R. AMBER12, 2012.
-
(2012)
Amber 12
-
-
Case, D.A.1
Darden, T.E.2
Cheatham, C.L.3
Simmerling, J.4
Wang, R.E.5
Duke, R.6
-
19
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. (1983) Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79, 926-931
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-931
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
20
-
-
49449085241
-
Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations
-
Joung, I. S. and Cheatham, T. E., III. (2008) Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations J. Phys. Chem. B 112, 9020-9041
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 9020-9041
-
-
Joung, I.S.1
Iii., E.C.T.2
-
21
-
-
84986440341
-
An analytical version of the SHAKE and RATTLE algorithm for rigid water models
-
Miyamoto, S. and Settle, P. A. K. (1992) An analytical version of the SHAKE and RATTLE algorithm for rigid water models J. Comput. Chem. 13, 952-962
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Settle, P.A.K.2
-
22
-
-
84860767348
-
Routine microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized Born
-
Gotz, A. W., Williamson, M. J., Xu, D., Poole, D., Le Grand, S., and Walker, R. C. (2012) Routine microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized Born J. Chem. Theory Comput. 8, 1542-1555
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 1542-1555
-
-
Gotz, A.W.1
Williamson, M.J.2
Xu, D.3
Poole, D.4
Le Grand, S.5
Walker, R.C.6
-
23
-
-
33846823909
-
Particle mesh Ewald: An N-log(N) method for Ewald sums in large systems
-
Darden, T., York, D., and Pedersen, L. (1993) Particle mesh Ewald: An N-log(N) method for Ewald sums in large systems J. Chem. Phys. 98, 10089-10093
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10093
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
24
-
-
45849096536
-
Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases
-
Whitmore, L. and Wallace, B. A. (2008) Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases Biopolymers 89, 392-400
-
(2008)
Biopolymers
, vol.89
, pp. 392-400
-
-
Whitmore, L.1
Wallace, B.A.2
-
25
-
-
60149110635
-
DichroCalc: Circular and linear dichroism online
-
Bulheller, B. M. and Hirst, J. D. (2009) DichroCalc: Circular and linear dichroism online Bioinformatics 25, 539-540
-
(2009)
Bioinformatics
, vol.25
, pp. 539-540
-
-
Bulheller, B.M.1
Hirst, J.D.2
|