-
2
-
-
84880709374
-
Genetic hitchhiking in spatially extended populations
-
Barton N.H., Etheridge A.M., Kelleher J., Véber A. Genetic hitchhiking in spatially extended populations. Theoretical Population Biology 2013, 87:75-89.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 75-89
-
-
Barton, N.H.1
Etheridge, A.M.2
Kelleher, J.3
Véber, A.4
-
3
-
-
84880702357
-
Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
-
Barton N.H., Etheridge A.M., Kelleher J., Véber A. Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks. Theoretical Population Biology 2013, 87:105-119.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 105-119
-
-
Barton, N.H.1
Etheridge, A.M.2
Kelleher, J.3
Véber, A.4
-
5
-
-
0010117449
-
On Ruelles probability cascades and an abstract cavity method
-
Bolthausen E., Sznitman A.S. On Ruelles probability cascades and an abstract cavity method. Comm. Math. Phys. 1998, 197:247-276.
-
(1998)
Comm. Math. Phys.
, vol.197
, pp. 247-276
-
-
Bolthausen, E.1
Sznitman, A.S.2
-
6
-
-
33749669193
-
Noisy traveling waves: effect of selection on genealogies
-
Brunet E., Derrida B., Mueller A.H., Munier S. Noisy traveling waves: effect of selection on genealogies. Europhys. Lett. 2006, 76:1-7.
-
(2006)
Europhys. Lett.
, vol.76
, pp. 1-7
-
-
Brunet, E.1
Derrida, B.2
Mueller, A.H.3
Munier, S.4
-
7
-
-
35248850316
-
Effect of selection on ancestry: an exactly soluble case and its phenomenological generalization
-
Brunet E., Derrida B., Mueller A.H., Munier S. Effect of selection on ancestry: an exactly soluble case and its phenomenological generalization. Phys. Rev. E 2007, 76:041104.
-
(2007)
Phys. Rev. E
, vol.76
, pp. 041104
-
-
Brunet, E.1
Derrida, B.2
Mueller, A.H.3
Munier, S.4
-
8
-
-
0001344844
-
The latent roots of certain Markov chains arising in genetics: a new approach. I. Haploid models
-
Cannings C. The latent roots of certain Markov chains arising in genetics: a new approach. I. Haploid models. Adv. Appl. Prob. 1974, 6:260-290.
-
(1974)
Adv. Appl. Prob.
, vol.6
, pp. 260-290
-
-
Cannings, C.1
-
9
-
-
0033243134
-
Particle representations for measure-valued population models
-
Donnelly P., Kurtz T.G. Particle representations for measure-valued population models. Ann. Probab. 1999, 27:166-205.
-
(1999)
Ann. Probab.
, vol.27
, pp. 166-205
-
-
Donnelly, P.1
Kurtz, T.G.2
-
10
-
-
0015310384
-
The sampling theory of selectively neutral alleles
-
Ewens W.J. The sampling theory of selectively neutral alleles. Theoret. Pop. Biol. 1972, 3:87-112.
-
(1972)
Theoret. Pop. Biol.
, vol.3
, pp. 87-112
-
-
Ewens, W.J.1
-
11
-
-
0035675042
-
Estimating recombination rates from population genetic data
-
Fearnhead P., Donnelly P. Estimating recombination rates from population genetic data. Genetics 2001, 159:1299-1318.
-
(2001)
Genetics
, vol.159
, pp. 1299-1318
-
-
Fearnhead, P.1
Donnelly, P.2
-
12
-
-
0343383751
-
-
Princeton University Press, Princeton, NJ, M.W. Feldman (Ed.)
-
Mathematical Evolutionary Theory 1989, Princeton University Press, Princeton, NJ. M.W. Feldman (Ed.).
-
(1989)
Mathematical Evolutionary Theory
-
-
-
13
-
-
0015171947
-
The rate of loss of multiple alleles in finite haploid populations
-
Felsenstein J. The rate of loss of multiple alleles in finite haploid populations. Theoret. Pop. Biol. 1971, 2:391-405.
-
(1971)
Theoret. Pop. Biol.
, vol.2
, pp. 391-405
-
-
Felsenstein, J.1
-
14
-
-
0006081303
-
Mathematics vs. evolution
-
Felsenstein J. Mathematics vs. evolution. Science 1989, 246:941-942.
-
(1989)
Science
, vol.246
, pp. 941-942
-
-
Felsenstein, J.1
-
15
-
-
0001947091
-
Likelihoods on coalescents: a monte carlo sampling approach to inferring parameters from population samples of molecular data
-
Institute of Mathematical Statistics, Hayward, California, F. Seillier-Moiseiwitsch (Ed.) Statistics in Molecular Biology and Genetics
-
Felsenstein J., Kuhner M.K., Yamato J., Beerli P. Likelihoods on coalescents: a monte carlo sampling approach to inferring parameters from population samples of molecular data. IMS Lecture Notes-Monograph Series 1999, vol. 33:163-185. Institute of Mathematical Statistics, Hayward, California. F. Seillier-Moiseiwitsch (Ed.).
-
(1999)
IMS Lecture Notes-Monograph Series
, vol.33
, pp. 163-185
-
-
Felsenstein, J.1
Kuhner, M.K.2
Yamato, J.3
Beerli, P.4
-
18
-
-
84972539388
-
Ancestral inference in population genetics
-
Griffiths R.C., Tavaré S. Ancestral inference in population genetics. Statistical Science 1994, 9:307-319.
-
(1994)
Statistical Science
, vol.9
, pp. 307-319
-
-
Griffiths, R.C.1
Tavaré, S.2
-
19
-
-
34548452457
-
Simulating probability distributions in the coalescent
-
Griffiths R.C., Tavaré S. Simulating probability distributions in the coalescent. Theoret. Pop. Biol. 1994, 46:131-159.
-
(1994)
Theoret. Pop. Biol.
, vol.46
, pp. 131-159
-
-
Griffiths, R.C.1
Tavaré, S.2
-
20
-
-
5044229945
-
-
Oxford University Press, Oxford
-
Hein J., Schierup M.H., Wiuf C. Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory 2005, Oxford University Press, Oxford.
-
(2005)
Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory
-
-
Hein, J.1
Schierup, M.H.2
Wiuf, C.3
-
21
-
-
84880704289
-
On spatial coalescents with multiple mergers in two dimensions
-
Heuer B., Sturm A. On spatial coalescents with multiple mergers in two dimensions. Theoretical Population Biology 2013, 87:90-104.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 90-104
-
-
Heuer, B.1
Sturm, A.2
-
22
-
-
84880700345
-
Genotype imputation in a coalescent model with infinitely-many-sites mutation
-
Huang L., Buzbas E.O., Rosenberg N.A. Genotype imputation in a coalescent model with infinitely-many-sites mutation. Theoretical Population Biology 2013, 87:62-74.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 62-74
-
-
Huang, L.1
Buzbas, E.O.2
Rosenberg, N.A.3
-
23
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
Hudson R.R. Properties of a neutral allele model with intragenic recombination. Theoret. Pop. Biol. 1983, 23:183-201.
-
(1983)
Theoret. Pop. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
24
-
-
0000424609
-
Testing the constant-rate neutral allele model with protein sequence data
-
Hudson R.R. Testing the constant-rate neutral allele model with protein sequence data. Evolution 1983, 37:203-217.
-
(1983)
Evolution
, vol.37
, pp. 203-217
-
-
Hudson, R.R.1
-
25
-
-
0023760376
-
The coalescent process in models with selection and recombination
-
Hudson R.R., Kaplan N.L. The coalescent process in models with selection and recombination. Genetics 1988, 120:831-840.
-
(1988)
Genetics
, vol.120
, pp. 831-840
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
26
-
-
84880575996
-
On the extended Moran model and its relation to coalescents with multiple collisions
-
Huillet T., Möhle M. On the extended Moran model and its relation to coalescents with multiple collisions. Theoretical Population Biology 2013, 87:5-14.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 5-14
-
-
Huillet, T.1
Möhle, M.2
-
27
-
-
0023815589
-
Coalescent process in models with selection
-
Kaplan N.L., Darden T., Hudson R.R. Coalescent process in models with selection. Genetics 1988, 120:819-829.
-
(1988)
Genetics
, vol.120
, pp. 819-829
-
-
Kaplan, N.L.1
Darden, T.2
Hudson, R.R.3
-
28
-
-
0022308262
-
The use of sample genealogies for studying a selectively neutral m-loci model with recombination
-
Kaplan N.L., Hudson R.R. The use of sample genealogies for studying a selectively neutral m-loci model with recombination. Theoret. Pop. Biol. 1985, 28:382-396.
-
(1985)
Theoret. Pop. Biol.
, vol.28
, pp. 382-396
-
-
Kaplan, N.L.1
Hudson, R.R.2
-
30
-
-
3843073210
-
Linkage disequilibrium as a signature of selective sweeps
-
Kim Y., Nielsen R. Linkage disequilibrium as a signature of selective sweeps. Genetics 2004, 167:1513-1524.
-
(2004)
Genetics
, vol.167
, pp. 1513-1524
-
-
Kim, Y.1
Nielsen, R.2
-
32
-
-
0002743467
-
Exchangeability and the evolution of large populations
-
North-Holland, Amsterdam, G. Koch, F. Spizzichino (Eds.)
-
Kingman J.F.C. Exchangeability and the evolution of large populations. Exchangeability in Probability and Statistics 1982, 97-112. North-Holland, Amsterdam. G. Koch, F. Spizzichino (Eds.).
-
(1982)
Exchangeability in Probability and Statistics
, pp. 97-112
-
-
Kingman, J.F.C.1
-
33
-
-
0002556819
-
On the genealogy of large populations
-
A
-
Kingman J.F.C. On the genealogy of large populations. J. Appl. Prob. 1982, 19A:27-43.
-
(1982)
J. Appl. Prob.
, vol.19
, pp. 27-43
-
-
Kingman, J.F.C.1
-
34
-
-
0034530345
-
Origins of the coalescent: 1974-1982
-
Kingman J.F.C. Origins of the coalescent: 1974-1982. Genetics 2000, 156:1461-1463.
-
(2000)
Genetics
, vol.156
, pp. 1461-1463
-
-
Kingman, J.F.C.1
-
36
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
Li N., Stephens M. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 2003, 165:2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
37
-
-
70350231628
-
Genotype imputation
-
Li Y., Willer C., Sanna S., Abecasis G. Genotype imputation. Annu. Rev. Genomics Hum. Genet. 2009, 10:387-406.
-
(2009)
Annu. Rev. Genomics Hum. Genet.
, vol.10
, pp. 387-406
-
-
Li, Y.1
Willer, C.2
Sanna, S.3
Abecasis, G.4
-
38
-
-
0001742504
-
La consaguinité dans une population limitée
-
Malécot G. La consaguinité dans une population limitée. C. R. Acad. Sci., Paris 1946, 222:841-843.
-
(1946)
C. R. Acad. Sci., Paris
, vol.222
, pp. 841-843
-
-
Malécot, G.1
-
39
-
-
0003668125
-
-
Masson, Paris, Extended translation: The Mathematics of Heredity. W.H. Freeman, San Francisco, 1969
-
Malécot G. Les Mathématiques de l'Hérédité 1948, Masson, Paris, Extended translation: The Mathematics of Heredity. W.H. Freeman, San Francisco, 1969.
-
(1948)
Les Mathématiques de l'Hérédité
-
-
Malécot, G.1
-
40
-
-
84946656793
-
Stochastic coalescence
-
Marcus A.H. Stochastic coalescence. Technometrics 1968, 10:133-143.
-
(1968)
Technometrics
, vol.10
, pp. 133-143
-
-
Marcus, A.H.1
-
41
-
-
31344468046
-
Approximating the coalescent with recombination
-
McVean G.A.T., Cardin N.J. Approximating the coalescent with recombination. Phil. Trans. R. Soc. B 2005, 360:1387-1393.
-
(2005)
Phil. Trans. R. Soc. B
, vol.360
, pp. 1387-1393
-
-
McVean, G.A.T.1
Cardin, N.J.2
-
42
-
-
0001152375
-
Coalescent results for two-sex population models
-
Möhle M. Coalescent results for two-sex population models. Adv. Appl. Prob. 1998, 30:513-520.
-
(1998)
Adv. Appl. Prob.
, vol.30
, pp. 513-520
-
-
Möhle, M.1
-
43
-
-
0001326507
-
A convergence theorem for Markov chains arising in population genetics and the coalescent with partial selfing
-
Möhle M. A convergence theorem for Markov chains arising in population genetics and the coalescent with partial selfing. Adv. Appl. Prob. 1998, 30:493-512.
-
(1998)
Adv. Appl. Prob.
, vol.30
, pp. 493-512
-
-
Möhle, M.1
-
44
-
-
0038896666
-
Robustness results for the coalescent
-
Möhle M. Robustness results for the coalescent. J. Appl. Prob. 1998, 35:438-447.
-
(1998)
J. Appl. Prob.
, vol.35
, pp. 438-447
-
-
Möhle, M.1
-
45
-
-
0013338435
-
The concept of duality and applications to Markov processes arising in neutral population genetics models
-
Möhle M. The concept of duality and applications to Markov processes arising in neutral population genetics models. Bernoulli 1999, 5:761-777.
-
(1999)
Bernoulli
, vol.5
, pp. 761-777
-
-
Möhle, M.1
-
46
-
-
84949558457
-
Random processes in genetics
-
Moran P.A.P. Random processes in genetics. Proc. Camb. Phil. Soc. 1958, 54:60-71.
-
(1958)
Proc. Camb. Phil. Soc.
, vol.54
, pp. 60-71
-
-
Moran, P.A.P.1
-
48
-
-
0016602523
-
Wandering distributions and the electrophoretic profile
-
Moran P.A.P. Wandering distributions and the electrophoretic profile. Theoret. Pop. Biol 1975, 8:318-330.
-
(1975)
Theoret. Pop. Biol
, vol.8
, pp. 318-330
-
-
Moran, P.A.P.1
-
50
-
-
0015765702
-
A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population
-
Ohta T., Kimura M. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res., Camb. 1973, 22:201-204.
-
(1973)
Genet. Res., Camb.
, vol.22
, pp. 201-204
-
-
Ohta, T.1
Kimura, M.2
-
51
-
-
0023822631
-
The relationships between gene trees and species trees
-
Pamilo P., Nei M. The relationships between gene trees and species trees. Mol. Biol. Evol. 1988, 5:568-583.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
52
-
-
33646592536
-
Soft sweeps II: molecular population genetics of adaptation from recurrent mutation or migration
-
Pennings P.S., Hermisson J. Soft sweeps II: molecular population genetics of adaptation from recurrent mutation or migration. Mol. Biol. Evol. 2006, 23:1076-1084.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1076-1084
-
-
Pennings, P.S.1
Hermisson, J.2
-
53
-
-
0033233681
-
Coalescents with multiple collisions
-
Pitman J. Coalescents with multiple collisions. Ann. Probab. 1999, 27:1870-1902.
-
(1999)
Ann. Probab.
, vol.27
, pp. 1870-1902
-
-
Pitman, J.1
-
54
-
-
84880702534
-
The ancestral selection graph under strong directional selection
-
Pokalyuk C., Pfaffelhuber P. The ancestral selection graph under strong directional selection. Theoretical Population Biology 2013, 87:25-33.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 25-33
-
-
Pokalyuk, C.1
Pfaffelhuber, P.2
-
55
-
-
0033233843
-
The general coalescent with asynchronous mergers of ancestral lines
-
Sagitov S. The general coalescent with asynchronous mergers of ancestral lines. J. Appl. Probab. 1999, 36:1116-1125.
-
(1999)
J. Appl. Probab.
, vol.36
, pp. 1116-1125
-
-
Sagitov, S.1
-
56
-
-
0001885968
-
Coalescents with simultaneous multiple collisions
-
Schweinsberg J. Coalescents with simultaneous multiple collisions. Electron. J. Probab. 2000, 5:1-50.
-
(2000)
Electron. J. Probab.
, vol.5
, pp. 1-50
-
-
Schweinsberg, J.1
-
57
-
-
15544374420
-
On the meaning and existence of an effective population size
-
Sjödin P., Kaj I., Krone S., Lascoux M., Nordborg M. On the meaning and existence of an effective population size. Genetics 2005, 169:1061-1070.
-
(2005)
Genetics
, vol.169
, pp. 1061-1070
-
-
Sjödin, P.1
Kaj, I.2
Krone, S.3
Lascoux, M.4
Nordborg, M.5
-
58
-
-
0034354581
-
Inference in molecular population genetics
-
Stephens M., Donnelly P. Inference in molecular population genetics. J. R. Stat. Soc. Ser. B 2000, 62:605-655.
-
(2000)
J. R. Stat. Soc. Ser. B
, vol.62
, pp. 605-655
-
-
Stephens, M.1
Donnelly, P.2
-
59
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens M., Smith N.J., Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 2001, 68:978-989.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
60
-
-
84880698033
-
Analysis of DNA sequence variation within marine species using beta-coalescents
-
Steinrücken M., Birkner M., Blath J. Analysis of DNA sequence variation within marine species using beta-coalescents. Theoretical Population Biology 2013, 87:15-24.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 15-24
-
-
Steinrücken, M.1
Birkner, M.2
Blath, J.3
-
61
-
-
84879741742
-
A sequentially Markov conditional sampling distribution for structured populations with migration and recombination
-
Steinrücken M., Paul J.S., Song Y.S. A sequentially Markov conditional sampling distribution for structured populations with migration and recombination. Theoretical Population Biology 2013, 87:51-61.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 51-61
-
-
Steinrücken, M.1
Paul, J.S.2
Song, Y.S.3
-
62
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 1983, 105:437-460.
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
63
-
-
0024262745
-
The coalescent in two partially isolated diffusion populations
-
Takahata N. The coalescent in two partially isolated diffusion populations. Genet. Res., Camb. 1988, 53:213-222.
-
(1988)
Genet. Res., Camb.
, vol.53
, pp. 213-222
-
-
Takahata, N.1
-
64
-
-
84880701977
-
The effect of fluctuating selection on the genealogy at a linked site
-
Taylor J.E. The effect of fluctuating selection on the genealogy at a linked site. Theoretical Population Biology 2013, 87:34-50.
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 34-50
-
-
Taylor, J.E.1
-
65
-
-
33947673770
-
-
Roberts Company Publishers, Greenwood Village, Colorado
-
Wakeley J. Coalescent Theory: An Introduction 2008, Roberts Company Publishers, Greenwood Village, Colorado.
-
(2008)
Coalescent Theory: An Introduction
-
-
Wakeley, J.1
-
66
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson G.A. On the number of segregating sites in genetical models without recombination. Theoret. Pop. Biol. 1975, 7:256-276.
-
(1975)
Theoret. Pop. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
67
-
-
0033150745
-
Recombination as a point process along sequences
-
Wiuf C., Hein J. Recombination as a point process along sequences. Theoret. Pop. Biol. 1999, 55:248-259.
-
(1999)
Theoret. Pop. Biol.
, vol.55
, pp. 248-259
-
-
Wiuf, C.1
Hein, J.2
-
68
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright S. Evolution in Mendelian populations. Genetics 1931, 16:97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
69
-
-
0000667524
-
Size of population and breeding structure in relation to evolution
-
Wright S. Size of population and breeding structure in relation to evolution. Science 1938, 76:430-431.
-
(1938)
Science
, vol.76
, pp. 430-431
-
-
Wright, S.1
-
70
-
-
0001024012
-
Isolation by distance
-
Wright S. Isolation by distance. Genetics 1943, 28:114-138.
-
(1943)
Genetics
, vol.28
, pp. 114-138
-
-
Wright, S.1
|