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Volumn 110, Issue 30, 2013, Pages 12361-12366

Functional genomic screen of human stem cell differentiation reveals pathways involved in neurodevelopment and neurodegeneration

Author keywords

High throughput sequencing; Mendelian disorders of the nervous system; Neural differentiation; Pooled RNAi screening; RNA binding proteins

Indexed keywords

SHORT HAIRPIN RNA;

EID: 84880682069     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1309725110     Document Type: Article
Times cited : (21)

References (32)
  • 1
    • 77950396799 scopus 로고    scopus 로고
    • Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing
    • Wu JQ, et al. (2010) Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing. Proc Natl Acad Sci USA 107(11):5254-5259.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.11 , pp. 5254-5259
    • Wu, J.Q.1
  • 2
    • 84856069665 scopus 로고    scopus 로고
    • A SUMOylation-dependent transcriptional subprogram is required for Myc-driven tumorigenesis
    • Kessler JD, et al. (2012) A SUMOylation-dependent transcriptional subprogram is required for Myc-driven tumorigenesis. Science 335(6066):348-353.
    • (2012) Science , vol.335 , Issue.6066 , pp. 348-353
    • Kessler, J.D.1
  • 3
    • 80055000824 scopus 로고    scopus 로고
    • RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia
    • Zuber J, et al. (2011) RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia. Nature 478(7370):524-528.
    • (2011) Nature , vol.478 , Issue.7370 , pp. 524-528
    • Zuber, J.1
  • 4
    • 79955666932 scopus 로고    scopus 로고
    • A comprehensive platform for highly multiplexed mammalian functional genetic screens
    • Ketela T, et al. (2011) A comprehensive platform for highly multiplexed mammalian functional genetic screens. BMC Genomics 12:213.
    • (2011) BMC Genomics , vol.12 , pp. 213
    • Ketela, T.1
  • 5
    • 84860388943 scopus 로고    scopus 로고
    • RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function
    • Moshkovich N, et al. (2011) RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function. Genes Dev 25(16):1686-1701.
    • (2011) Genes Dev , vol.25 , Issue.16 , pp. 1686-1701
    • Moshkovich, N.1
  • 6
    • 82755168802 scopus 로고    scopus 로고
    • RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses
    • Panda D, et al. (2011) RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses. Proc Natl Acad Sci USA 108(47):19036-19041.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.47 , pp. 19036-19041
    • Panda, D.1
  • 7
    • 77349088562 scopus 로고    scopus 로고
    • Decoding pooled RNAi screens by means of barcode tiling arrays
    • Boettcher M, et al. (2010) Decoding pooled RNAi screens by means of barcode tiling arrays. BMC Genomics 11:7.
    • (2010) BMC Genomics , vol.11 , pp. 7
    • Boettcher, M.1
  • 8
    • 38849098442 scopus 로고    scopus 로고
    • Cancer proliferation gene discovery through functional genomics
    • Schlabach MR, et al. (2008) Cancer proliferation gene discovery through functional genomics. Science 319(5863):620-624.
    • (2008) Science , vol.319 , Issue.5863 , pp. 620-624
    • Schlabach, M.R.1
  • 9
    • 12144288006 scopus 로고    scopus 로고
    • A resource for large-scale RNA-interference-based screens in mammals
    • Paddison PJ, et al. (2004) A resource for large-scale RNA-interference-based screens in mammals. Nature 428(6981):427-431.
    • (2004) Nature , vol.428 , Issue.6981 , pp. 427-431
    • Paddison, P.J.1
  • 10
    • 20444376939 scopus 로고    scopus 로고
    • A genetic screen for candidate tumor suppressors identifies REST
    • Westbrook TF, et al. (2005) A genetic screen for candidate tumor suppressors identifies REST. Cell 121(6):837-848.
    • (2005) Cell , vol.121 , Issue.6 , pp. 837-848
    • Westbrook, T.F.1
  • 11
    • 67349251607 scopus 로고    scopus 로고
    • Rapid creation and quantitative monitoring of high coverage shRNA libraries
    • Bassik MC, et al. (2009) Rapid creation and quantitative monitoring of high coverage shRNA libraries. Nat Methods 6(6):443-445.
    • (2009) Nat Methods , vol.6 , Issue.6 , pp. 443-445
    • Bassik, M.C.1
  • 12
    • 84864326893 scopus 로고    scopus 로고
    • Molecular biology. Use and abuse of RNAi to study mammalian gene function
    • Kaelin WG, Jr. (2012) Molecular biology. Use and abuse of RNAi to study mammalian gene function. Science 337(6093):421-422.
    • (2012) Science , vol.337 , Issue.6093 , pp. 421-422
    • Kaelin Jr., W.G.1
  • 13
    • 34648874629 scopus 로고    scopus 로고
    • Integrative genomic and functional analyses reveal neuronal subtype differentiation bias in human embryonic stem cell lines
    • Wu H, et al. (2007) Integrative genomic and functional analyses reveal neuronal subtype differentiation bias in human embryonic stem cell lines. Proc Natl Acad Sci USA 104(34):13821-13826.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.34 , pp. 13821-13826
    • Wu, H.1
  • 14
    • 36049013008 scopus 로고    scopus 로고
    • Polysialic acid-neural cell adhesion molecule in brain plasticity: From synapses to integration of new neurons
    • Gascon E, Vutskits L, Kiss JZ (2007) Polysialic acid-neural cell adhesion molecule in brain plasticity: From synapses to integration of new neurons. Brain Res Brain Res Rev 56(1):101-118.
    • (2007) Brain Res Brain Res Rev , vol.56 , Issue.1 , pp. 101-118
    • Gascon, E.1    Vutskits, L.2    Kiss, J.Z.3
  • 15
    • 34748888919 scopus 로고    scopus 로고
    • Markers and methods for cell sorting of human embryonic stem cell-derived neural cell populations
    • Pruszak J, Sonntag KC, Aung MH, Sanchez-Pernaute R, Isacson O (2007) Markers and methods for cell sorting of human embryonic stem cell-derived neural cell populations. Stem Cells 25(9):2257-2268.
    • (2007) Stem Cells , vol.25 , Issue.9 , pp. 2257-2268
    • Pruszak, J.1    Sonntag, K.C.2    Aung, M.H.3    Sanchez-Pernaute, R.4    Isacson, O.5
  • 16
    • 66249103703 scopus 로고    scopus 로고
    • RNA granules: Post-transcriptional and epigenetic modulators of gene expression
    • Anderson P, Kedersha N (2009) RNA granules: Post-transcriptional and epigenetic modulators of gene expression. Nat Rev Mol Cell Biol 10(6):430-436.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , Issue.6 , pp. 430-436
    • Anderson, P.1    Kedersha, N.2
  • 18
    • 77649162059 scopus 로고    scopus 로고
    • Direct conversion of fibroblasts to functional neurons by defined factors
    • Vierbuchen T, et al. (2010) Direct conversion of fibroblasts to functional neurons by defined factors. Nature 463(7284):1035-1041.
    • (2010) Nature , vol.463 , Issue.7284 , pp. 1035-1041
    • Vierbuchen, T.1
  • 19
    • 84884903165 scopus 로고    scopus 로고
    • ING1 and ING2: Multifaceted tumor suppressor genes
    • 10.1007/s00018-013-1270-z
    • Guerillon C, Larrieu D, Pedeux R (2013) ING1 and ING2: Multifaceted tumor suppressor genes. Cell Mol Life Sci, 10.1007/s00018-013-1270-z.
    • (2013) Cell Mol Life Sci
    • Guerillon, C.1    Larrieu, D.2    Pedeux, R.3
  • 20
    • 84860508493 scopus 로고    scopus 로고
    • An RNA interference screen uncovers a new molecule in stem cell self-renewal and long-term regeneration
    • Chen T, et al. (2012) An RNA interference screen uncovers a new molecule in stem cell self-renewal and long-term regeneration. Nature 485(7396):104-108.
    • (2012) Nature , vol.485 , Issue.7396 , pp. 104-108
    • Chen, T.1
  • 21
    • 58149521944 scopus 로고    scopus 로고
    • Highly parallel identification of essential genes in cancer cells
    • Luo B, et al. (2008) Highly parallel identification of essential genes in cancer cells. Proc Natl Acad Sci USA 105(51):20380-20385.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.51 , pp. 20380-20385
    • Luo, B.1
  • 22
    • 70449091786 scopus 로고    scopus 로고
    • Systematic RNA interference reveals that oncogenic KRASdriven cancers require TBK1
    • Barbie DA, et al. (2009) Systematic RNA interference reveals that oncogenic KRASdriven cancers require TBK1. Nature 462(7269):108-112.
    • (2009) Nature , vol.462 , Issue.7269 , pp. 108-112
    • Barbie, D.A.1
  • 24
    • 79851502150 scopus 로고    scopus 로고
    • Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology
    • International Inflammatory Bowel Disease Genetics Constortium
    • Rossin EJ, et al.; International Inflammatory Bowel Disease Genetics Constortium (2011) Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology. PLoS Genet 7(1):e1001273.
    • (2011) PLoS Genet , vol.7 , Issue.1
    • Rossin, E.J.1
  • 25
    • 84862128438 scopus 로고    scopus 로고
    • TDP-43 aggregation in neurodegeneration: Are stress granules the key?
    • Dewey CM, et al. (2012) TDP-43 aggregation in neurodegeneration: Are stress granules the key? Brain Res 1462:16-25.
    • (2012) Brain Res , vol.1462 , pp. 16-25
    • Dewey, C.M.1
  • 26
    • 84857768992 scopus 로고    scopus 로고
    • Cellular model of TAR DNA-binding protein 43 (TDP-43) aggregation based on its C-terminal Gln/Asn-rich region
    • Budini M, et al. (2012) Cellular model of TAR DNA-binding protein 43 (TDP-43) aggregation based on its C-terminal Gln/Asn-rich region. J Biol Chem 287(10):7512-7525.
    • (2012) J Biol Chem , vol.287 , Issue.10 , pp. 7512-7525
    • Budini, M.1
  • 27
    • 79952589652 scopus 로고    scopus 로고
    • TAR DNA-binding protein 43 (TDP-43) regulates stress granule dynamics via differential regulation of G3BP and TIA-1
    • McDonald KK, et al. (2011) TAR DNA-binding protein 43 (TDP-43) regulates stress granule dynamics via differential regulation of G3BP and TIA-1. Hum Mol Genet 20(7):1400-1410.
    • (2011) Hum Mol Genet , vol.20 , Issue.7 , pp. 1400-1410
    • McDonald, K.K.1
  • 28
    • 84872194966 scopus 로고    scopus 로고
    • Two methods for full-length RNA-seq for low quantities of cells and single cells
    • Pan X, et al. (2012) Two methods for full-length RNA-seq for low quantities of cells and single cells. Proc Natl Acad Sci USA 110(2):594-599.
    • (2012) Proc Natl Acad Sci USA , vol.110 , Issue.2 , pp. 594-599
    • Pan, X.1
  • 29
    • 84862151933 scopus 로고    scopus 로고
    • The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease
    • King OD, Gitler AD, Shorter J (2012) The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease. Brain Res 1462:61-80.
    • (2012) Brain Res , vol.1462 , pp. 61-80
    • King, O.D.1    Gitler, A.D.2    Shorter, J.3
  • 30
    • 84867686875 scopus 로고    scopus 로고
    • Endogenous TDP-43, but not FUS, contributes to stress granule assembly via G3BP
    • Aulas A, Stabile S, Vande Velde C (2012) Endogenous TDP-43, but not FUS, contributes to stress granule assembly via G3BP. Mol Neurodegener 7:54.
    • (2012) Mol Neurodegener , vol.7 , pp. 54
    • Aulas, A.1    Stabile, S.2    Vande Velde, C.3
  • 31
    • 81855172508 scopus 로고    scopus 로고
    • The X-chromosome-linked intellectual disability protein PQBP1 is a component of neuronal RNA granules and regulates the appearance of stress granules
    • Kunde SA, et al. (2011) The X-chromosome-linked intellectual disability protein PQBP1 is a component of neuronal RNA granules and regulates the appearance of stress granules. Hum Mol Genet 20(24):4916-4931.
    • (2011) Hum Mol Genet , vol.20 , Issue.24 , pp. 4916-4931
    • Kunde, S.A.1
  • 32
    • 84874113985 scopus 로고    scopus 로고
    • A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility
    • Bassik MC, et al. (2013) A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility. Cell 152(4):909-922.
    • (2013) Cell , vol.152 , Issue.4 , pp. 909-922
    • Bassik, M.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.