Automated subcortical segmentation using FIRST: Test-retest reliability, interscanner reliability, and comparison to manual segmentation

Human Brain Mapping

Volumn 34, Issue 9, 2013, Pages 2313-2329

  Nugent, Allison C ^a   Luckenbaugh, David A ^a   Wood, Suzanne E ^b   Bogers, Wendy ^c   Zarate, Carlos A ^a   Drevets, Wayne C ^c  

^a NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

^b TEMPLE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c LAUREATE INSTITUTE FOR BRAIN RESEARCH   (United States)

Author keywords

Accumbens; Amygdale; Brain; Caudate; Hippocampus; Pallidum; Putamen; Thalamus; Volume

Indexed keywords

ADULT; AMYGDALOID NUCLEUS; ANXIETY DISORDER; ARTICLE; BIPOLAR DISORDER; BRAIN SIZE; CAUDATE NUCLEUS; CONTROLLED STUDY; DIAGNOSIS RELATED GROUP; FEMALE; GLOBUS PALLIDUS; HIPPOCAMPUS; HUMAN; IMAGE PROCESSING; LATERAL BRAIN VENTRICLE; MAGNETIC RESONANCE IMAGE AUTOMATED SUBCORTICAL SEGMENTATION; MAJOR CLINICAL STUDY; MAJOR DEPRESSION; MALE; MENTAL PATIENT; MOOD DISORDER; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; NUCLEUS ACCUMBENS; POSTTRAUMATIC STRESS DISORDER; PRIORITY JOURNAL; PUTAMEN; QUALITY CONTROL; RETROSPECTIVE STUDY; SIGNAL NOISE RATIO; TEST RETEST RELIABILITY; THALAMUS;

ACCUMBENS; AMYGDALE; BRAIN; CAUDATE; HIPPOCAMPUS; PALLIDUM; PUTAMEN; THALAMUS; VOLUME;

ADULT; BRAIN; BRAIN MAPPING; FEMALE; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; REPRODUCIBILITY OF RESULTS;

EID: 84880559618     PISSN: 10659471     EISSN: 10970193     Source Type: Journal    
DOI: 10.1002/hbm.22068     Document Type: Article

References (18)

1. Anastasi A (1998): Psychological Testing. New York, NY: Macmillan.
2. Bielau H, Trubner K, Krell D, Agelink MW, Bernstein HG, Stauch R, Mawrin C, Danos P, Gerhard L, Bogerts B, et al. (2005): Volume deficits of subcortical nuclei in mood disorders A postmortem study. Eur Arch Psychiatry Clin Neurosci 255:401-412.
3. Brouwer RM, Hulshoff Pol HE, Schnack HG. (2010): Segmentation of MRI brain scans using nonuniform partial volume densities. Neuroimage 49:467-477.
4. Dale AM, Fischl B, Sereno MI. (1999): Cortical surfacebased analysis. I. Segmentation and surface reconstruction. Neuroimage 9:179-194.
5. Duvernoy HM.1998. The Human Hippocampus: Functional Anatomy, Vascularization and Serial Sections with MRI. 2nd edition. Berlin Heidelberg New York: Springer-Verlag.
6. Emsell L, McDonald C. (2009): The structural neuroimaging of bipolar disorder. Int Rev Psychiatry 21:297-313.
7. Hibar D, Jahanshad N, Stein J, Winkler A, Toro R, Jenkinson M (2011): Enigma Consortium First Protocol. http://enigma.loni.ucla.edu/protocols/imagingprotocols/firstprotocol. Accessed on 4 January, 2011.
8. Jovicich J, Czanner S, Han X, Salat D, van der Kouwe A, Quinn B, Pacheco J, Albert M, Killiany R, Blacker D, et al. (2009): MRIderived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths. Neuroimage 46:177-192.
9. Konarski JZ, McIntyre RS, Kennedy SH, RafiTari S, Soczynska JK, Ketter TA. (2008): Volumetric neuroimaging investigations in mood disorders: bipolar disorder versus major depressive disorder. Bipolar Disord 10:1-37.
10. Makris N, Kennedy DN, Meyer J, Worth A, Caviness VS, Seidman L, Goldstein J, Goodman J, Hoge E, Macpherson C, Tourville J, Klaveness S, Hodge SM, Melrose R, Rauch S, Kim H, Harris G, Boehland A, Glode B, Koch J, Segal E, Sonricker A, Dieterich M, Papadimitriou G, Normandin JJ, Cullen N, Boeriel, D, Sanders H. (2004): General Brain Segmentation-Method and Utilization. http://www.cma.mgh.harvard.edu/manuals/segmentation. Accessed on 4 January, 2011.
11. Morey RA, Petty CM, Xu Y, Hayes JP, Wagner HR, 2nd, Lewis DV, LaBar KS, Styner M, McCarthy G. (2009): A comparison of automated segmentation and manual tracing for quantifying hippocampal and amygdala volumes. Neuroimage 45:855-866.
12. Morey RA, Selgrade ES, Wagner HR 2nd, Huettel SA, Wang L, McCarthy G. (2010): Scan-rescan reliability of subcortical brain volumes derived from automated segmentation. Hum Brain Mapp 31:1751--1762.
13. Nugent AC, Milham MP, Bain EE, Mah L, Cannon DM, Marrett S, Zarate CA, Pine DS, Price JL, Drevets WC. (2006): Cortical abnormalities in bipolar disorder investigated with MRI and voxelbased morphometry. Neuroimage 30:485-497.
14. Nunnally JC, Bernstein IH (1994): Psychometric Theory. New York, NY: McCrawHill.
15. Patenaude B, Smith SM, Kennedy DN, Jenkinson M (2011): A Bayesian model of shape and appearance for subcortical brain segmentation. Neuroimage 56:907-922.
16. Reig S, SanchezGonzalez J, Arango C, Castro J, GonzalezPinto A, Ortuno F, CrespoFacorro B, Bargallo N, Desco M (2009): Assessment of the increase in variability when combining volumetric data from different scanners. Hum Brain Mapp 30:355-368.
17. Schnack HG, van Haren NE, Hulshoff Pol HE, Picchioni M, Weisbrod M, Sauer H, Cannon T, Huttunen M, Murray R, Kahn RS (2004): Reliability of brain volumes from multicenter MRI acquisition: A calibration study. Hum Brain Mapp 22:312-320.
18. Shrout PE, Fleiss JL (1979): Intraclass Correlations-Uses in Assessing Rater Reliability. Psychol Bull 86:420-428.