-
1
-
-
81555204763
-
Matched molecular pairs as a medicinal chemistry tool
-
Griffen, E.; Leach, A. G.; Robb, G. R.; Warner, D. J. Matched molecular pairs as a medicinal chemistry tool J. Med. Chem. 2011, 54 (22) 7739-7750
-
(2011)
J. Med. Chem.
, vol.54
, Issue.22
, pp. 7739-7750
-
-
Griffen, E.1
Leach, A.G.2
Robb, G.R.3
Warner, D.J.4
-
2
-
-
85016377807
-
Structure Modification in Chemical Databases
-
Oprea, T. I. Wiley-VCH Verlag GmbH & Co. Weinheim, Germany
-
Kenny, P. W.; Sadowski, J. Structure Modification in Chemical Databases. In Cheminformatics in Drug Discovery; Oprea, T. I., Ed.; Wiley-VCH Verlag GmbH & Co.: Weinheim, Germany, 2005.
-
(2005)
Cheminformatics in Drug Discovery
-
-
Kenny, P.W.1
Sadowski, J.2
-
3
-
-
84875459673
-
SwissBioisostere: A database of molecular replacements for ligand design
-
Wirth, M.; Zoete, V.; Michielin, O.; Sauer, W. H. SwissBioisostere: a database of molecular replacements for ligand design Nucleic Acids Res. 2013, 41 (D1) D1137-1143
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.D1
, pp. 1137-1143
-
-
Wirth, M.1
Zoete, V.2
Michielin, O.3
Sauer, W.H.4
-
4
-
-
0036025428
-
The most common chemical replacements in drug-like compounds
-
Sheridan, R. P. The most common chemical replacements in drug-like compounds J. Chem. Inf. Comput. Sci. 2002, 42 (1) 103-108
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, Issue.1
, pp. 103-108
-
-
Sheridan, R.P.1
-
5
-
-
80052925631
-
Deep understanding of structure-solubility relationship for a diverse set of organic compounds using matched molecular pairs
-
Zhang, L.; Zhu, H.; Mathiowetz, A.; Gao, H. Deep understanding of structure-solubility relationship for a diverse set of organic compounds using matched molecular pairs Bioorg. Med. Chem. 2011, 19 (19) 5763-5770
-
(2011)
Bioorg. Med. Chem.
, vol.19
, Issue.19
, pp. 5763-5770
-
-
Zhang, L.1
Zhu, H.2
Mathiowetz, A.3
Gao, H.4
-
6
-
-
33750976700
-
Matched molecular pairs as a guide in the optimization of pharmaceutical properties; A study of aqueous solubility, plasma protein binding and oral exposure
-
Leach, A. G.; Jones, H. D.; Cosgrove, D. A.; Kenny, P. W.; Ruston, L.; MacFaul, P.; Wood, J. M.; Colclough, N.; Law, B. Matched molecular pairs as a guide in the optimization of pharmaceutical properties; a study of aqueous solubility, plasma protein binding and oral exposure J. Med. Chem. 2006, 49 (23) 6672-6682
-
(2006)
J. Med. Chem.
, vol.49
, Issue.23
, pp. 6672-6682
-
-
Leach, A.G.1
Jones, H.D.2
Cosgrove, D.A.3
Kenny, P.W.4
Ruston, L.5
Macfaul, P.6
Wood, J.M.7
Colclough, N.8
Law, B.9
-
7
-
-
77958518144
-
Lead optimization using matched molecular pairs: Inclusion of contextual information for enhanced prediction of HERG inhibition, solubility, and lipophilicity
-
Papadatos, G.; Alkarouri, M.; Gillet, V. J.; Willett, P.; Kadirkamanathan, V.; Luscombe, C. N.; Bravi, G.; Richmond, N. J.; Pickett, S. D.; Hussain, J.; Pritchard, J. M.; Cooper, A. W.; Macdonald, S. J. Lead optimization using matched molecular pairs: inclusion of contextual information for enhanced prediction of HERG inhibition, solubility, and lipophilicity J. Chem. Inf. Model. 2010, 50 (10) 1872-1886
-
(2010)
J. Chem. Inf. Model.
, vol.50
, Issue.10
, pp. 1872-1886
-
-
Papadatos, G.1
Alkarouri, M.2
Gillet, V.J.3
Willett, P.4
Kadirkamanathan, V.5
Luscombe, C.N.6
Bravi, G.7
Richmond, N.J.8
Pickett, S.D.9
Hussain, J.10
Pritchard, J.M.11
Cooper, A.W.12
Macdonald, S.J.13
-
8
-
-
84870012905
-
Matched molecular pair analysis of small molecule microarray data identifies promiscuity cliffs and reveals molecular origins of extreme compound promiscuity
-
Dimova, D.; Hu, Y.; Bajorath, J. Matched molecular pair analysis of small molecule microarray data identifies promiscuity cliffs and reveals molecular origins of extreme compound promiscuity J. Med. Chem. 2012, 55 (22) 10220-10228
-
(2012)
J. Med. Chem.
, vol.55
, Issue.22
, pp. 10220-10228
-
-
Dimova, D.1
Hu, Y.2
Bajorath, J.3
-
9
-
-
84861033562
-
Prospective Prediction of Antitarget Activity by Matched Molecular Pairs Analysis
-
Warner, D. J.; Bridgland-Taylor, M. H.; Sefton, C. E.; Wood, D. J. Prospective Prediction of Antitarget Activity by Matched Molecular Pairs Analysis Mol. Inf. 2012, 31 (5) 365-368
-
(2012)
Mol. Inf.
, vol.31
, Issue.5
, pp. 365-368
-
-
Warner, D.J.1
Bridgland-Taylor, M.H.2
Sefton, C.E.3
Wood, D.J.4
-
10
-
-
84861031267
-
Targeted Kinase Selectivity from Kinase Profiling Data
-
Milletti, F.; Hermann, J. C. Targeted Kinase Selectivity from Kinase Profiling Data ACS Med. Chem. Lett. 2012, 3 (5) 383-386
-
(2012)
ACS Med. Chem. Lett.
, vol.3
, Issue.5
, pp. 383-386
-
-
Milletti, F.1
Hermann, J.C.2
-
11
-
-
84871587383
-
Systematic Assessment of Compound Series with SAR Transfer Potential
-
Zhang, B.; Wassermann, A. M.; Vogt, M.; Bajorath, J. Systematic Assessment of Compound Series with SAR Transfer Potential J. Chem. Inf. Model. 2012, 52 (12) 3138-3143
-
(2012)
J. Chem. Inf. Model.
, vol.52
, Issue.12
, pp. 3138-3143
-
-
Zhang, B.1
Wassermann, A.M.2
Vogt, M.3
Bajorath, J.4
-
12
-
-
80051978443
-
A data mining method to facilitate SAR transfer
-
Wassermann, A. M.; Bajorath, J. A data mining method to facilitate SAR transfer J. Chem. Inf. Model. 2011, 51 (8) 1857-1866
-
(2011)
J. Chem. Inf. Model.
, vol.51
, Issue.8
, pp. 1857-1866
-
-
Wassermann, A.M.1
Bajorath, J.2
-
13
-
-
84862192766
-
ChEMBL: A large-scale bioactivity database for drug discovery
-
Gaulton, A.; Bellis, L. J.; Bento, A. P.; Chambers, J.; Davies, M.; Hersey, A.; Light, Y.; McGlinchey, S.; Michalovich, D.; Al-Lazikani, B.; Overington, J. P. ChEMBL: a large-scale bioactivity database for drug discovery Nucleic Acids Res. 2012, 40 (Database issue) D1100-1107
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
, pp. 1100-1107
-
-
Gaulton, A.1
Bellis, L.J.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
Hersey, A.6
Light, Y.7
McGlinchey, S.8
Michalovich, D.9
Al-Lazikani, B.10
Overington, J.P.11
-
14
-
-
80051956026
-
Conserved core substructures in the overlay of protein-ligand complexes
-
Finzel, B. C.; Akavaram, R.; Ragipindi, A.; Van Voorst, J. R.; Cahn, M.; Davis, M. E.; Pokross, M. E.; Sheriff, S.; Baldwin, E. T. Conserved core substructures in the overlay of protein-ligand complexes J. Chem. Inf. Model. 2011, 51 (8) 1931-1941
-
(2011)
J. Chem. Inf. Model.
, vol.51
, Issue.8
, pp. 1931-1941
-
-
Finzel, B.C.1
Akavaram, R.2
Ragipindi, A.3
Van Voorst, J.R.4
Cahn, M.5
Davis, M.E.6
Pokross, M.E.7
Sheriff, S.8
Baldwin, E.T.9
-
15
-
-
84880549746
-
-
OpenEye Scientific Software, Inc. Santa Fe, NM
-
Shape Toolkit; OpenEye Scientific Software, Inc.: Santa Fe, NM, 2012.
-
(2012)
Shape Toolkit
-
-
-
16
-
-
0001109246
-
A fast method of molecular shape comparison: A simple application of a Gaussian description of molecular shape
-
Grant, J. A.; Gallardo, M. A.; Pickup, B. T. A fast method of molecular shape comparison: A simple application of a Gaussian description of molecular shape J. Comput. Chem. 1996, 17 (14) 1653-1666
-
(1996)
J. Comput. Chem.
, vol.17
, Issue.14
, pp. 1653-1666
-
-
Grant, J.A.1
Gallardo, M.A.2
Pickup, B.T.3
-
17
-
-
84880535454
-
-
version 2.4.6; OpenEye Scientific Software, Inc. Santa Fe, NM
-
Omega, version 2.4.6; OpenEye Scientific Software, Inc.: Santa Fe, NM, 2012.
-
(2012)
Omega
-
-
-
18
-
-
21244468757
-
Searching techniques for databases of two- and three-dimensional chemical structures
-
Willett, P. Searching techniques for databases of two- and three-dimensional chemical structures J. Med. Chem. 2005, 48 (13) 4183-4199
-
(2005)
J. Med. Chem.
, vol.48
, Issue.13
, pp. 4183-4199
-
-
Willett, P.1
-
19
-
-
0032058905
-
RECAP - Retrosynthetic Combinatorial Analysis Procedure: A Powerful New Technique for Identifying Privileged Molecular Fragments with Useful Applications in Combinatorial Chemistry
-
Lewell, X. Q.; Judd, D. B.; Watson, S. P.; Hann, M. M. RECAP-Retrosynthetic Combinatorial Analysis Procedure: A Powerful New Technique for Identifying Privileged Molecular Fragments with Useful Applications in Combinatorial Chemistry J. Chem. Inf. Comput. Sci. 1998, 38 (3) 511-522
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, Issue.3
, pp. 511-522
-
-
Lewell, X.Q.1
Judd, D.B.2
Watson, S.P.3
Hann, M.M.4
-
20
-
-
0015861774
-
Relationship between the inhibition constant (KI) and the concentration of inhibitor which causes 50% inhibition (I50) of an enzymatic reaction
-
Yung-Chi, C.; Prusoff, W. H. Relationship between the inhibition constant (KI) and the concentration of inhibitor which causes 50% inhibition (I50) of an enzymatic reaction Biochem. Pharmacol. (Amsterdam, Neth.) 1973, 22 (23) 3099-3108
-
(1973)
Biochem. Pharmacol. (Amsterdam, Neth.)
, vol.22
, Issue.23
, pp. 3099-3108
-
-
Yung-Chi, C.1
Prusoff, W.H.2
-
22
-
-
41849106872
-
Synthesis and SAR of new pyrrolo[2,1-f][1,2,4]triazines as potent p38 alpha MAP kinase inhibitors
-
Wrobleski, S. T.; Lin, S.; Hynes, J., Jr.; Wu, H.; Pitt, S.; Shen, D. R.; Zhang, R.; Gillooly, K. M.; Shuster, D. J.; McIntyre, K. W.; Doweyko, A. M.; Kish, K. F.; Tredup, J. A.; Duke, G. J.; Sack, J. S.; McKinnon, M.; Dodd, J.; Barrish, J. C.; Schieven, G. L.; Leftheris, K. Synthesis and SAR of new pyrrolo[2,1-f][1,2,4]triazines as potent p38 alpha MAP kinase inhibitors Bioorg. Med. Chem. Lett. 2008, 18 (8) 2739-2744
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, Issue.8
, pp. 2739-2744
-
-
Wrobleski, S.T.1
Lin, S.2
Hynes Jr., J.3
Wu, H.4
Pitt, S.5
Shen, D.R.6
Zhang, R.7
Gillooly, K.M.8
Shuster, D.J.9
McIntyre, K.W.10
Doweyko, A.M.11
Kish, K.F.12
Tredup, J.A.13
Duke, G.J.14
Sack, J.S.15
McKinnon, M.16
Dodd, J.17
Barrish, J.C.18
Schieven, G.L.19
Leftheris, K.20
more..
-
23
-
-
42149187593
-
Structure-guided discovery of cyclin-dependent kinase inhibitors
-
Fischmann, T. O.; Hruza, A.; Duca, J. S.; Ramanathan, L.; Mayhood, T.; Windsor, W. T.; Le, H. V.; Guzi, T. J.; Dwyer, M. P.; Paruch, K.; Doll, R. J.; Lees, E.; Parry, D.; Seghezzi, W.; Madison, V. Structure-guided discovery of cyclin-dependent kinase inhibitors Biopolymers 2008, 89 (5) 372-379
-
(2008)
Biopolymers
, vol.89
, Issue.5
, pp. 372-379
-
-
Fischmann, T.O.1
Hruza, A.2
Duca, J.S.3
Ramanathan, L.4
Mayhood, T.5
Windsor, W.T.6
Le, H.V.7
Guzi, T.J.8
Dwyer, M.P.9
Paruch, K.10
Doll, R.J.11
Lees, E.12
Parry, D.13
Seghezzi, W.14
Madison, V.15
-
24
-
-
14944348527
-
A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
-
Rush, T. S., 3rd; Grant, J. A.; Mosyak, L.; Nicholls, A. A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction J. Med. Chem. 2005, 48 (5) 1489-1495
-
(2005)
J. Med. Chem.
, vol.48
, Issue.5
, pp. 1489-1495
-
-
Grant, J.A.1
Mosyak, L.2
Nicholls, A.3
-
25
-
-
78651107624
-
Trends in kinase selectivity: Insights for target class-focused library screening
-
Posy, S. L.; Hermsmeier, M. A.; Vaccaro, W.; Ott, K. H.; Todderud, G.; Lippy, J. S.; Trainor, G. L.; Loughney, D. A.; Johnson, S. R. Trends in kinase selectivity: insights for target class-focused library screening J. Med. Chem. 2011, 54 (1) 54-66
-
(2011)
J. Med. Chem.
, vol.54
, Issue.1
, pp. 54-66
-
-
Posy, S.L.1
Hermsmeier, M.A.2
Vaccaro, W.3
Ott, K.H.4
Todderud, G.5
Lippy, J.S.6
Trainor, G.L.7
Loughney, D.A.8
Johnson, S.R.9
-
26
-
-
0037068532
-
Do structurally similar molecules have similar biological activity?
-
Martin, Y. C.; Kofron, J. L.; Traphagen, L. M. Do structurally similar molecules have similar biological activity? J. Med. Chem. 2002, 45 (19) 4350-4358
-
(2002)
J. Med. Chem.
, vol.45
, Issue.19
, pp. 4350-4358
-
-
Martin, Y.C.1
Kofron, J.L.2
Traphagen, L.M.3
-
27
-
-
4444377864
-
CORES: An automated method for generating three-dimensional models of protein/ligand complexes
-
Hare, B. J.; Walters, W. P.; Caron, P. R.; Bemis, G. W. CORES: an automated method for generating three-dimensional models of protein/ligand complexes J. Med. Chem. 2004, 47 (19) 4731-4740
-
(2004)
J. Med. Chem.
, vol.47
, Issue.19
, pp. 4731-4740
-
-
Hare, B.J.1
Walters, W.P.2
Caron, P.R.3
Bemis, G.W.4
-
28
-
-
33750981540
-
Do structurally similar ligands bind in a similar fashion?
-
Boström, J.; Hogner, A.; Schmitt, S. Do structurally similar ligands bind in a similar fashion? J. Med. Chem. 2006, 49 (23) 6716-6725
-
(2006)
J. Med. Chem.
, vol.49
, Issue.23
, pp. 6716-6725
-
-
Boström, J.1
Hogner, A.2
Schmitt, S.3
-
29
-
-
77952716960
-
Molecular shape and medicinal chemistry: A perspective
-
Nicholls, A.; McGaughey, G. B.; Sheridan, R. P.; Good, A. C.; Warren, G.; Mathieu, M.; Muchmore, S. W.; Brown, S. P.; Grant, J. A.; Haigh, J. A.; Nevins, N.; Jain, A. N.; Kelley, B. Molecular shape and medicinal chemistry: a perspective J. Med. Chem. 2010, 53 (10) 3862-3886
-
(2010)
J. Med. Chem.
, vol.53
, Issue.10
, pp. 3862-3886
-
-
Nicholls, A.1
McGaughey, G.B.2
Sheridan, R.P.3
Good, A.C.4
Warren, G.5
Mathieu, M.6
Muchmore, S.W.7
Brown, S.P.8
Grant, J.A.9
Haigh, J.A.10
Nevins, N.11
Jain, A.N.12
Kelley, B.13
-
30
-
-
77956016083
-
WizePairZ: A novel algorithm to identify, encode, and exploit matched molecular pairs with unspecified cores in medicinal chemistry
-
Warner, D. J.; Griffen, E. J.; St-Gallay, S. A. WizePairZ: a novel algorithm to identify, encode, and exploit matched molecular pairs with unspecified cores in medicinal chemistry J. Chem. Inf. Model. 2010, 50 (8) 1350-1357
-
(2010)
J. Chem. Inf. Model.
, vol.50
, Issue.8
, pp. 1350-1357
-
-
Warner, D.J.1
Griffen, E.J.2
St-Gallay, S.A.3
-
31
-
-
84863155378
-
SAR mining and its application to the design of TRPA1 antagonists
-
Mills, J. E. J.; Brown, A. D.; Ryckmans, T.; Miller, D. C.; Skerratt, S. E.; Barker, C. M.; Bunnage, M. E. SAR mining and its application to the design of TRPA1 antagonists MedChemComm 2012, 3 (2) 174-178
-
(2012)
MedChemComm
, vol.3
, Issue.2
, pp. 174-178
-
-
Mills, J.E.J.1
Brown, A.D.2
Ryckmans, T.3
Miller, D.C.4
Skerratt, S.E.5
Barker, C.M.6
Bunnage, M.E.7
-
32
-
-
84879566401
-
AMMPIRE: A Matched Molecular Pairs Database for Structure-Based Drug Design and Optimization
-
in press
-
Weber, J.; Achenbach, J.; Moser, D.; Proschak, E. AMMPIRE: A Matched Molecular Pairs Database for Structure-Based Drug Design and Optimization. J. Med. Chem. 2013, in press
-
(2013)
J. Med. Chem.
-
-
Weber, J.1
Achenbach, J.2
Moser, D.3
Proschak, E.4
-
33
-
-
83455179421
-
Identification and Application of Antitarget Activity Hotspots to Guide Compound Optimization
-
Hessler, G.; Matter, H.; Schmidt, F.; Giegerich, C.; Wang, L.-h.; Güssregen, S.; Baringhaus, K.-H. Identification and Application of Antitarget Activity Hotspots to Guide Compound Optimization Mol. Inf. 2011, 30 (11-12) 996-1008
-
(2011)
Mol. Inf.
, vol.30
, Issue.1112
, pp. 996-1008
-
-
Hessler, G.1
Matter, H.2
Schmidt, F.3
Giegerich, C.4
Güssregen, S.5
Baringhaus, K.-H.6
-
34
-
-
2442647742
-
BREED: Generating Novel Inhibitors through Hybridization of Known Ligands. Application to CDK2, P38, and HIV Protease
-
Pierce, A. C.; Rao, G.; Bemis, G. W. BREED: Generating Novel Inhibitors through Hybridization of Known Ligands. Application to CDK2, P38, and HIV Protease J. Med. Chem. 2004, 47 (11) 2768-2775
-
(2004)
J. Med. Chem.
, vol.47
, Issue.11
, pp. 2768-2775
-
-
Pierce, A.C.1
Rao, G.2
Bemis, G.W.3
-
35
-
-
84871565042
-
Novel kinase inhibitors by reshuffling ligand functionalities across the human kinome
-
Vidovic, D.; Muskal, S. M.; Schurer, S. C. Novel kinase inhibitors by reshuffling ligand functionalities across the human kinome J. Chem. Inf. Model. 2012, 52 (12) 3107-3115
-
(2012)
J. Chem. Inf. Model.
, vol.52
, Issue.12
, pp. 3107-3115
-
-
Vidovic, D.1
Muskal, S.M.2
Schurer, S.C.3
-
36
-
-
17144419244
-
EA3D: A Computer-Aided Ligand Design for Structure-Based Drug Design
-
Douguet, D.; Munier-Lehmann, H.; Labesse, G.; Pochet, S. EA3D: A Computer-Aided Ligand Design for Structure-Based Drug Design J. Med. Chem. 2005, 48 (7) 2457-2468
-
(2005)
J. Med. Chem.
, vol.48
, Issue.7
, pp. 2457-2468
-
-
Douguet, D.1
Munier-Lehmann, H.2
Labesse, G.3
Pochet, S.4
-
37
-
-
0028380643
-
CAVEAT: A program to facilitate the design of organic molecules
-
Lauri, G.; Bartlett, P. A. CAVEAT: a program to facilitate the design of organic molecules J. Comput.-Aided Mol. Des. 1994, 8 (1) 51-66
-
(1994)
J. Comput.-Aided Mol. Des.
, vol.8
, Issue.1
, pp. 51-66
-
-
Lauri, G.1
Bartlett, P.A.2
-
38
-
-
84870945499
-
Advances in computational medicinal chemistry: Matched molecular pair analysis
-
Wassermann, A. M.; Dimova, D.; Iyer, P.; Bajorath, J. Advances in computational medicinal chemistry: Matched molecular pair analysis Drug Dev. Res. 2012, 73 (8) 518-527
-
(2012)
Drug Dev. Res.
, vol.73
, Issue.8
, pp. 518-527
-
-
Wassermann, A.M.1
Dimova, D.2
Iyer, P.3
Bajorath, J.4
-
39
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig, B.; Nicholls, A. Classical electrostatics in biology and chemistry Science 1995, 268 (5214) 1144-1149
-
(1995)
Science
, vol.268
, Issue.5214
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
40
-
-
0028332007
-
A role for surface hydrophobicity in protein-protein recognition
-
Young, L.; Jernigan, R. L.; Covell, D. G. A role for surface hydrophobicity in protein-protein recognition Protein Sci. 1994, 3 (5) 717-729
-
(1994)
Protein Sci.
, vol.3
, Issue.5
, pp. 717-729
-
-
Young, L.1
Jernigan, R.L.2
Covell, D.G.3
-
41
-
-
79959937283
-
DEPTH: A web server to compute depth and predict small-molecule binding cavities in proteins
-
Tan, K. P.; Varadarajan, R.; Madhusudhan, M. S. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins Nucleic Acids Res. 2011, 39 (Web Server issue) W242-248
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.WEB SERVER ISSUE
, pp. 242-248
-
-
Tan, K.P.1
Varadarajan, R.2
Madhusudhan, M.S.3
-
42
-
-
0024685703
-
Identifying targets for bioreductive agents: Using GRID to predict selective binding regions of proteins
-
Reynolds, C. A.; Wade, R. C.; Goodford, P. J. Identifying targets for bioreductive agents: using GRID to predict selective binding regions of proteins J. Mol. Graphics 1989, 7 (2) 100
-
(1989)
J. Mol. Graphics
, vol.7
, Issue.2
, pp. 100
-
-
Reynolds, C.A.1
Wade, R.C.2
Goodford, P.J.3
-
43
-
-
0035823226
-
Superstar: Comparison of CSD and PDB-based interaction fields as a basis for the prediction of protein-ligand interactions
-
Boer, D. R.; Kroon, J.; Cole, J. C.; Smith, B.; Verdonk, M. L. Superstar: comparison of CSD and PDB-based interaction fields as a basis for the prediction of protein-ligand interactions J. Mol. Biol. 2001, 312 (1) 275-287
-
(2001)
J. Mol. Biol.
, vol.312
, Issue.1
, pp. 275-287
-
-
Boer, D.R.1
Kroon, J.2
Cole, J.C.3
Smith, B.4
Verdonk, M.L.5
-
44
-
-
79952161696
-
Ligand binding to protein-binding pockets with wet and dry regions
-
Wang, L.; Berne, B. J.; Friesner, R. A. Ligand binding to protein-binding pockets with wet and dry regions Proc. Natl. Acad. Sci. U. S. A. 2011, 108 (4) 1326-1330
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, Issue.4
, pp. 1326-1330
-
-
Wang, L.1
Berne, B.J.2
Friesner, R.A.3
-
45
-
-
84880552658
-
-
OpenEye Scientific Software, Inc. Santa Fe, NM
-
SZMAP; OpenEye Scientific Software, Inc.: Santa Fe, NM, 2011.
-
(2011)
SZMAP
-
-
-
46
-
-
63849218455
-
Roles of water in protein structure and function studied by molecular liquid theory
-
Imai, T. Roles of water in protein structure and function studied by molecular liquid theory Front. Biosci. 2009, 14, 1387-1402
-
(2009)
Front. Biosci.
, vol.14
, pp. 1387-1402
-
-
Imai, T.1
-
47
-
-
84880527464
-
-
OpenEye Scientific Software, Inc. Santa Fe, NM
-
BROOD, OpenEye Scientific Software, Inc.: Santa Fe, NM, 2005.
-
(2005)
BROOD
-
-
|