Surveillance for enteric pathogens in a case-control study of acute diarrhea in Western Kenya

Transactions of the Royal Society of Tropical Medicine and Hygiene

Volumn 107, Issue 2, 2013, Pages 83-90

  Swierczewski, Brett E ^a   Odundo, Elizabeth A ^a   Koech, Margaret C ^a   Ndonye, Janet N ^a   Kirera, Ronald K ^a   Kirera, CliffP ^a   Cheruiyot, Erick K ^a   Wu, Max T ^b   Lee, James E ^b   Zhang, Chunlin ^b   Oaks, Edwin V ^b  

^a U S ARMY   (United States)

^b WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

Author keywords

Antimicrobial resistance; Escherichia coli; Gastroenteritis; Protozoa; Rotavirus; Shigella

Indexed keywords

AMPICILLIN; COTRIMOXAZOLE; TETRACYCLINE; ANTIINFECTIVE AGENT;

ACUTE DIARRHEA; ADOLESCENT; ADULT; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; BIOSURVEILLANCE; CAMPYLOBACTER JEJUNI; CHILD; CONTROLLED STUDY; ENTAMOEBA HISTOLYTICA; ESCHERICHIA COLI; FECES ANALYSIS; GIARDIA LAMBLIA; HUMAN; INFANT; KENYA; MAJOR CLINICAL STUDY; MULTIDRUG RESISTANCE; NEWBORN; NONHUMAN; PARASITE EXAMINATION; PATHOGENICITY; PRESCHOOL CHILD; ROTAVIRUS; SALMONELLA; SCHOOL CHILD; SHIGELLA; VIRUS DETECTION; ACUTE DISEASE; CASE CONTROL STUDY; DIARRHEA; DRUG EFFECT; ENTEROBACTERIACEAE; ENTEROBACTERIACEAE INFECTION; FECES; FEMALE; HEALTH SURVEY; ISOLATION AND PURIFICATION; MALE; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; PARASITOLOGY; VIROLOGY;

ACUTE DISEASE; ADOLESCENT; ADULT; ANTI-BACTERIAL AGENTS; CASE-CONTROL STUDIES; CHILD; CHILD, PRESCHOOL; DIARRHEA; ENTEROBACTERIACEAE; ENTEROBACTERIACEAE INFECTIONS; FECES; FEMALE; GIARDIA LAMBLIA; HUMANS; KENYA; MALE; MICROBIAL SENSITIVITY TESTS; POPULATION SURVEILLANCE; ROTAVIRUS; YOUNG ADULT;

MLCS; MLOWN;

EID: 84880478967     PISSN: 00359203     EISSN: 18783503     Source Type: Journal    
DOI: 10.1093/trstmh/trs022     Document Type: Article

References (54)

1. Murray CJ, Lopez AD. Mortality by cause for eight regions of the world: Global Burden of Disease Study. Lancet 1997;349:1269-76.
2. Boschi-Pinto C, Velebit L, Shibuya K. Estimating child mortality due to diarrhoea in developing countries. Bull World Health Organ 2008; 86:710-7.
3. Ramani S, Kang G. Viruses causing childhood diarrhoea in the developing world. Curr Opin Infect Dis 2009;22:477-82.
4. Karanis P, Kourenti C, Smith H. Waterborne transmission of protozoan parasites: a worldwide review of outbreaks and lessons learnt. J Water Health 2007;5:1-38.
5. Guerrant RL, Hughes JM, Lima NL, Crane J. Diarrhea in developed and developing countries: magnitude, special settings, and etiologies. Rev Infect Dis 1990;12(Suppl 1):S41-50.
6. Jiang ZD, Lowe B, Verenkar MP et al. Prevalence of enteric pathogens among international travelers with diarrhea acquired in Kenya (Mombasa), India (Goa), or Jamaica (Montego Bay). J Infect Dis 2002;185:497-502.
7. Mugoya I, Kariuki S, Galgalo T et al. Rapid spread of Vibrio cholerae O1 throughout Kenya, 2005. Am J Trop Med Hyg 2008;78:527-33.
8. Brooks JT, Ochieng JB, Kumar L et al. Surveillance for bacterial diarrhea and antimicrobial resistance in rural western Kenya, 1997-2003. Clin Infect Dis 2006;43:393-401.
9. Chunge RN, Nagelkerke N, Karumba PN et al. Longitudinal study of young children in Kenya: intestinal parasitic infection with special reference to Giardia lamblia, its prevalence, incidence and duration, and its association with diarrhoea and with other parasites. Acta Trop 1991;50:39-49.
10. Nyarango RM, Aloo PA, Kabiru EW, Nyanchongi BO. The risk of pathogenic intestinal parasite infections in Kisii Municipality, Kenya. BMC Public Health 2008;8:237.
11. Gatei W, Ashford RW, Beeching NJ et al. Cryptosporidium muris infection in an HIV-infected adult, Kenya. Emerg Infect Dis 2002; 8:204-6.
12. Saidi SM, Iijima Y, Sang WK et al. Epidemiological study on infectious diarrheal diseases in children in a coastal rural area of Kenya. Microbiol Immunol 1997;41:773-8.
13. Joyce T, McGuigan KG, Elmore-Meegan M, Conroy RM. Prevalence of enteropathogens in stools of rural Maasai children under five years of age in the Maasailand region of the Kenyan Rift Valley. East Afr Med J 1996;73:59-62.
14. Davis L, DiRita V. Growth and laboratory maintenance of Campylobacter jejuni. Curr Protoc Microbiol 2008; Chapter 8: Unit 8A.1.1-8A.1.7.
15. Grimes KA, Mohamed JA, Dupont HL et al. PCR-based assay using occult blood detection cards for detection of diarrheagenic Escherichia coli in specimens from U.S. travelers to Mexico with acute diarrhea. J Clin Microbiol 2008;46:2227-30.
16. Swierczewski B, Odundo E, Ndonye J et al. Comparison of the triage micro parasite panel and microscopy for the detection of Entamoeba histolytica/Entamoeba dispar, Giardia lamblia, and Cryptosporidium parvum in stool samples collected in Kenya. J Trop Med 2012; doi: 10.1155/2012/564721.
17. Garcia LS. Diagnostic medical parasitology. 4th ed. Washington, DC: American Society for Microbiology; 2001.
18. Ali MB, Ghenghesh KS, Aissa RB et al. Etiology of childhood diarrhea in Zliten, Libya. Saudi Med J 2005;26:1759-65.
19. Baqui AH, Sack RB, Black RE et al. Enteropathogens associated with acute and persistent diarrhea in Bangladeshi children less than 5 years of age. J Infect Dis 1992;166:792-6.
20. El-Mohamady H, Abdel-Messih IA, Youssef FG et al. Enteric pathogens associated with diarrhea in children in Fayoum, Egypt. Diagn Microbiol Infect Dis 2006;56:1-5.
21. Schorling JB, Wanke CA, Schorling SK. A prospective study of persistent diarrhea among children in an urban Brazilian slum. Patterns of occurrence and etiologic agents. Am J Epidemiol 1990;132:144-56.
22. Brooks JT, Shapiro RL, Kumar L et al. Epidemiology of sporadic bloody diarrhea in rural Western Kenya. Am J Trop Med Hyg 2003;68:671-7.
23. Malakooti MA, Alaii J, Shanks GD, Phillips-Howard PA. Epidemic dysentery in western Kenya. Trans R Soc Trop Med Hyg 1997; 91:541-3.
24. Bodhidatta L, McDaniel P, Sornsakrin S, Srijan A, Serichantalergs O, Mason CJ. Case-control study of diarrheal disease etiology in a remote rural area in Western Thailand. Am J Trop Med Hyg 2010; 83:1106-9.
25. Albert MJ, Faruque AS, Faruque SM, Sack RB, Mahalanabis D. Case-control study of enteropathogens associated with childhood diarrhea in Dhaka, Bangladesh. J Clin Microbiol 1999;37:3458-64.
26. Vu Nguyen T, Le Van P, Le Huy C et al. Etiology and epidemiology of diarrhea in children in Hanoi, Vietnam. Int J Infect Dis 2006;10:298-308.
27. Hien BT, Trang do T, Scheutz F et al. Diarrhoeagenic Escherichia coli and other causes of childhood diarrhoea: a case-control study in children living in a wastewater-use area in Hanoi, Vietnam. J Med Microbiol 2007;56(Pt. 8):1086-96.
28. Gilman RH, Marquis GS, Miranda E et al. Rapid reinfection by Giardia lamblia after treatment in a hyperendemic Third World community. Lancet 1988;1:343-5.
29. Diamond LS, Clark CG. A redescription of Entamoeba histolytica Schaudinn, 1903 (Emended Walker, 1911) separating it from Entamoeba dispar Brumpt, 1925. J Eukaryot Microbiol 1993;40: 340-4.
30. Garcia LS, Shimizu RY, Bernard CN. Detection of Giardia lamblia, Entamoeba histolytica/Entamoeba dispar, and Cryptosporidium parvum antigens in human fecal specimens using the triage parasite panel enzyme immunoassay. J Clin Microbiol 2000;38: 3337-40.
31. Kiulia NM, Kamenwa R, Irimu G et al. The epidemiology of human rotavirus associated with diarrhoea in Kenyan children: a review. J Trop Pediatr 2008;54:401-5.
32. Nyangao J, Page N, Esona M et al. Characterization of human rotavirus strains from children with diarrhea in Nairobi and Kisumu, Kenya, between 2000 and 2002. J Infect Dis 2010;202(Suppl): S187-92.
33. Kiulia NM, Netshikweta R, Page NA et al. The detection of enteric viruses in selected urban and rural river water and sewage in Kenya, with special reference to rotaviruses. J Appl Microbiol 2010;109:818-28.
34. Onyango-Ouma W, Gerba CP. Away-from-home drinking water consumption practices and the microbiological quality of water consumed in rural western Kenya. J Water Health 2011;9:628-36.
35. Kimani-Murage EW, Ngindu AM. Quality of water the slum dwellers use: the case of a Kenyan slum. J Urban Health 2007;84:829-38.
36. O'Brien TF. The global epidemic nature of antimicrobial resistance and the need to monitor and manage it locally. Clin Infect Dis 1997;24(Suppl 1):S2-8.
37. Finch MJ, Morris JG Jr, Kaviti J et al. Epidemiology of antimicrobial resistant cholera in Kenya and East Africa. Am J Trop Med Hyg 1988;39:484-90.
38. WHO. The treatment of diarrhoea: A manual for physicians and other senior health workers. Geneva: World Health Organization; 2005. http://www.who.int/maternal_child_adolescent/documents/9241593180/en/[accessed 27 August 2012].
39. Oundo JO, Kariuki S, Maghenda JK, Lowe BS. Antibiotic susceptibility and genotypes of non-typhi Salmonella isolates from children in Kilifion the Kenya coast. Trans R Soc Trop Med Hyg 2000;94:212-5.
40. Shapiro RL, Kumar L, Phillips-Howard P et al. Antimicrobial-resistant bacterial diarrhea in rural western Kenya. J Infect Dis 2001;183: 1701-4.
41. Oundo JO, Kariuki SM, Boga HI et al. High incidence of enteroaggregative Escherichia coli among food handlers in three areas of Kenya: a possible transmission route of travelers' diarrhea. J Travel Med 2008;15:31-8.
42. Kariuki S, Revathi G, Corkill J et al. Escherichia coli from communityacquired urinary tract infections resistant to fluoroquinolones and extended-spectrum beta-lactams. J Infect Dev Ctries 2007; 1:257-62.
43. Zahar JR, Lortholary O, Martin C et al. Addressing the challenge of extended-spectrum beta-lactamases. Curr Opin Investig Drugs 2009;10:172-80.
44. Kiiru J, Kariuki S, Goddeeris BM et al. Escherichia coli strains from Kenyan patients carrying conjugatively transferable broad-spectrum beta-lactamase, qnr, aac(6')-Ib-cr and 16S rRNA methyltransferase genes. J Antimicrob Chemother 2011;66:1639-42.
45. Boyle F, Healy G, Hale J et al. Characterization of a novel extendedspectrum beta-lactamase phenotype from OXA-1 expression in Salmonella typhimurium strains from Africa and Ireland. Diagn Microbiol Infect Dis 2011;70:549-53.
46. Poirel L, Revathi G, Bernabeu S, Nordmann P. Detection of NDM-1-producing Klebsiella pneumoniae in Kenya. Antimicrob Agents Chemother 2011; 55:934-6.
47. Nakata S, Honma S, Numata K et al. Prevalence of human calicivirus infections in Kenya as determined by enzyme immunoassays for three genogroups of the virus. J Clin Microbiol 1998;36:3160-3.
48. Magwalivha M, Wolfaardt M, Kiulia NM et al. High prevalence of species D human adenoviruses in fecal specimens from Urban Kenyan children with diarrhea. J Med Virol 2010;82:77-84.
49. Kiulia NM, Mwenda JM, Nyachieo A et al. Astrovirus infection in young Kenyan children with diarrhoea. J Trop Pediatr 2007;53:206-9. 50 Sang WK, Boga HI, Waiyaki PG et al. Prevalence and genetic characteristics of Shigatoxigenic Escherichia coli from patients with diarrhoea in Maasailand, Kenya. J Infect Dev Ctries 2012;6:102-8.
50. Sang WK, Boga HI, Waiyaki PG et al. Prevalence and genetic characteristics of Shigatoxigenic Escherichia coli from patients with diarrhoea in Maasailand, Kenya. J Infect Dev Ctries 2012;6:102-8.
51. O'Reilly CE, Jaron P, Ochieng B, Nyaguara A, Tate JE, Parsons MB et al. Risk factors for death among children less than 5 years old hospitalized with diarrhea in rural western Kenya, 2005-2007: A Cohort Study. PLoS Med 2012;9:pe1001256.
52. van Eijk AM, Brooks JT, Adcock PM et al. Diarrhea in children less than two years of age with known HIV status in Kisumu, Kenya. Int J Infect Dis 2010;14:e220-5.
53. Davies NE, Karstaedt AS. Shigella bacteraemia over a decade in Soweto, South Africa. Trans R Soc Trop Med Hyg 2008;102:1269-73.
54. Foglia G, Sateren WB, Renzullo PO et al. High prevalence of HIV infection among rural tea plantation residents in Kericho, Kenya. Epidemiol Infect 2008;136:694-702.