A TAF4 coactivator function for E proteins that involves enhanced TFIID binding

Genes and Development

Volumn 27, Issue 14, 2013, Pages 1596-1609

  Chen, Wei Yi ^a   Zhang, Jinsong ^a   Geng, Huimin ^b   Du, Zhimei ^a   Nakadai, Tomoyoshi ^a   Roeder, Robert G ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

E proteins; E2A; HEB; TAF4; TAFH; TFIID; Transcription coactivator

Indexed keywords

E PROTEIN; PROTEIN TAF4; TATA BINDING PROTEIN ASSOCIATED FACTOR; TRANSCRIPTION FACTOR IID; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; GENE ACTIVATION; GENE TARGETING; HUMAN; HUMAN CELL; IN VIVO STUDY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN PROTEIN INTERACTION; RNA SEQUENCE; TRANSCRIPTION INITIATION;

E PROTEINS; E2A; HEB; TAF4; TAFH; TFIID; TRANSCRIPTION COACTIVATOR;

BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; GENE DELETION; GENE EXPRESSION REGULATION; HELA CELLS; HUMANS; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; TATA-BINDING PROTEIN ASSOCIATED FACTORS; TRANSCRIPTION FACTOR TFIID; TRANSCRIPTOME;

EID: 84880434462     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.216192.113     Document Type: Article

References (45)

1. Abmayr SM, Workman JL, Roeder RG. 1988. The pseudorabies immediate early protein stimulates in vitro transcription by facilitating TFIID: Promoter interactions. Genes Dev 2: 542-553.
2. Albright SR, Tjian R. 2000. TAFs revisited: More data reveal new twists and confirm old ideas. Gene 242: 1-13.
3. Aspland SE, Bendall HH, Murre C. 2001. The role of E2A-PBX1 in leukemogenesis. Oncogene 20: 5708-5717.
4. Bayly R, Chuen L, Currie RA, Hyndman BD, Casselman R, Blobel GA, LeBrun DP. 2004. E2A-PBX1 interacts directly with the KIX domain of CBP/p300 in the induction of proliferation in primary hematopoietic cells. J Biol Chem 279: 55362-55371.
5. Bhalla S, Spaulding C, Brumbaugh RL, Zagort DE, Massari ME, Murre C, Kee BL. 2008. differential roles for the E2A activation domains in B lymphocytes and macrophages. J Immunol 180: 1694-1703.
6. Black JC, Choi JE, Lombardo SR, Carey M. 2006. A mechanism for coordinating chromatin modification and preinitiation complex assembly. Mol Cell 23: 809-818.
7. Burley SK, Roeder RG. 1996. Biochemistry and structural biology of transcription factor IID (TFIID). Annu Rev Biochem 65: 769-799.
8. Chatterjee S, Struhl K. 1995. Connecting a promoter-bound protein to TBP bypasses the need for a transcriptional activation domain. Nature 374: 820-822.
9. Chi T, Carey M. 1996. Assembly of the isomerized TFIIA-TFIID-TATA ternary complex is necessary and sufficient for gene activation. Genes Dev 10: 2540-2550.
10. Chiang CM, Ge H, Wang Z, Hoffmann A, Roeder RG. 1993. Unique TATA-binding protein-containing complexes and cofactors involved in transcription by RNA polymerases II and III. EMBO J 12: 2749-2762.
11. Garbett KA, Tripathi MK, Cencki B, Layer JH, Weil PA. 2007. Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol Cell Biol 27: 297-311.
12. Goodrich JA, Tjian R. 2010. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nat Rev Genet 11: 549-558.
13. Green MR. 2000. TBP-associated factors (TAFIIs): Multiple, selective transcriptional mediators in common complexes. Trends Biochem Sci 25: 59-63.
14. Guermah M, Tao Y, Roeder RG. 2001. Positive and negative TAF(II) functions that suggest a dynamic TFIID structure and elicit synergy with traps in activator-induced transcription. Mol Cell Biol 21: 6882-6894.
15. Hoey T, Dynlacht BD, Peterson MG, Pugh BF, Tjian R. 1990. Isolation and characterization of the Drosophila gene encoding the TATA box binding protein, TFIID. Cell 61: 1179-1186.
16. Hoffmann A, Sinn E, Yamamoto T, Wang J, Roy A, Horikoshi M, Roeder RG. 1990. Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID). Nature 346: 387-390.
17. Horikoshi M, Hai T, Lin YS, Green MR, Roeder RG. 1988. Transcription factor ATF interacts with the TATA factor to facilitate establishment of a preinitiation complex. Cell 54: 1033-1042.
18. Juven-Gershon T, Hsu JY, Theisen JW, Kadonaga JT. 2008. The RNA polymerase II core promoter-the gateway to transcription. Curr Opin Cell Biol 20: 253-259.
19. Kee BL. 2009. E and ID proteins branch out. Nat Rev Immunol 9: 175-184.
20. Kobayashi N, Boyer TG, Berk AJ. 1995. A class of activation domains interacts directly with TFIIA and stimulates TFIIA-TFIID-promoter complex assembly. Mol Cell Biol 15: 6465-6473.
21. Layer JH, Miller SG, Weil PA. 2010. Direct transactivatortranscription factor IID (TFIID) contacts drive yeast ribosomal protein gene transcription. J Biol Chem 285: 15489-15499.
22. Li B, Carey M, Workman JL. 2007. The role of chromatin during transcription. Cell 128: 707-719.
23. Lieberman PM, Berk AJ. 1994. A mechanism for TAFs in transcriptional activation: Activation domain enhancement of TFIID-TFIIA-promoter DNA complex formation. Genes Dev 8: 995-1006.
24. Liu WL, Coleman RA, Ma E, Grob P, Yang JL, Zhang Y, Dailey G, Nogales E, Tjian R. 2009. Structures of three distinct activator-TFIID complexes. Genes Dev 23: 1510-1521.
25. Massari ME, Grant PA, Pray-Grant MG, Berger SL, Workman JL, Murre C. 1999. A conserved motif present in a class of helix-loop-helix proteins activates transcription by direct recruitment of the SAGA complex. Mol Cell 4: 63-73.
26. Mengus G, Fadloun A, Kobi D, Thibault C, Perletti L, Michel I, Davidson I. 2005. TAF4 inactivation in embryonic fibroblasts activates TGF b signalling and autocrine growth. EMBO J 24: 2753-2767.
27. Mizzen CA, Yang XJ, Kokubo T, Brownell JE, Bannister AJ, Owen-Hughes T, Workman J, Wang L, Berger SL, Kouzarides T, et al. 1996. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity. Cell 87: 1261-1270.
28. Naar AM, Lemon BD, Tjian R. 2001. Transcriptional coactivator complexes. Annu Rev Biochem 70: 475-501.
29. Oelgeschlager T, Tao Y, Kang YK, Roeder RG. 1998. Transcription activation via enhanced preinitiation complex assembly in a human cell-free system lacking TAFIIs. Mol Cell 1: 925-931.
30. Plevin MJ, Zhang J, Guo C, Roeder RG, Ikura M. 2006. The acute myeloid leukemia fusion protein AML1-ETO targets E proteins via a paired amphipathic helix-like TBP-associated factor homology domain. Proc Natl Acad Sci 103: 10242-10247.
31. Prabhu S, Ignatova A, Park ST, Sun XH. 1997. Regulation of the expression of cyclin-dependent kinase inhibitor p21 by E2A and Id proteins. Mol Cell Biol 17: 5888-5896.
32. Pugh BF, Tjian R. 1990. Mechanism of transcriptional activation by Sp1: Evidence for coactivators. Cell 61: 1187-1197.
33. Quong MW, Romanow WJ, Murre C. 2002. E protein function in lymphocyte development. Annu Rev Immunol 20: 301-322.
34. Roeder RG. 1996. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem Sci 21: 327-335.
35. Roeder RG. 2005. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett 579: 909-915.
36. Saluja D, Vassallo MF, Tanese N. 1998. Distinct subdomains of human TAFII130 are required for interactions with glutaminerich transcriptional activators. Mol Cell Biol 18: 5734-5743.
37. Sawadogo M, Roeder RG. 1985. Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region. Cell 43: 165-175.
38. Seidel MG, Look AT. 2001. E2A-HLF usurps control of evolutionarily conserved survival pathways. Oncogene 20: 5718-5725.
39. Thomas MC, Chiang CM. 2006. The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol 41: 105-178.
40. Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
41. Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
42. Wang X, Truckses DM, Takada S, Matsumura T, Tanese N, Jacobson RH. 2007. Conserved region I of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators. Proc Natl Acad Sci 104: 7839-7844.
43. Wright KJ, Tjian R. 2009. Wnt signaling targets ETO coactivation domain of TAF4/TFIID in vivo. Proc Natl Acad Sci 106: 55-60.
44. Wright KJ, Marr MT 2nd, Tjian R. 2006. TAF4 nucleates a core subcomplex of TFIID and mediates activated transcription from a TATA-less promoter. Proc Natl Acad Sci 103: 12347-12352.
45. Zhang J, Kalkum M, Yamamura S, Chait BT, Roeder RG. 2004. E protein silencing by the leukemogenic AML1-ETO fusion protein. Science 305: 1286-1289.