메뉴 건너뛰기




Volumn 55, Issue 7, 2013, Pages 576-585

Using genome-referenced expressed sequence tag assembly to analyze the origin and expression patterns of gossypium hirsutum transcripts

Author keywords

Cotton fiber; Deep sequencing; Expressed sequence tag assembly; Functional genomics; Gossypium

Indexed keywords

CELLULOSE; ETHYLENE; ETHYLENE DERIVATIVE; MESSENGER RNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84880428303     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/jipb.12066     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 84874004458 scopus 로고    scopus 로고
    • Cotton fiber cell walls of Gossypium hirsutum and Gossypium barbadense have differences related to loosely-bound xyloglucan
    • Avci U, Pattathil S, Singh B, Brown VL, Hahn MG, Haigler CH (2013) Cotton fiber cell walls of Gossypium hirsutum and Gossypium barbadense have differences related to loosely-bound xyloglucan. PLoS ONE 8, e56315.
    • (2013) PLoS ONE , vol.8
    • Avci, U.1    Pattathil, S.2    Singh, B.3    Brown, V.L.4    Hahn, M.G.5    Haigler, C.H.6
  • 2
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gütz S, García-Gómez JM, Terol J, Talón M, Robles M (2005) Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gütz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 4
    • 8644248861 scopus 로고    scopus 로고
    • Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton
    • Han Z, Guo W, Song X, Zhang T (2004) Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton. Mol. Genet. Genomics 272, 308-327.
    • (2004) Mol. Genet. Genomics , vol.272 , pp. 308-327
    • Han, Z.1    Guo, W.2    Song, X.3    Zhang, T.4
  • 5
    • 30544440501 scopus 로고    scopus 로고
    • Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton
    • Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T (2006) Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor. Appl. Genet. 112, 430-439.
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 430-439
    • Han, Z.1    Wang, C.2    Song, X.3    Guo, W.4    Gou, J.5    Li, C.6    Chen, X.7    Zhang, T.8
  • 6
    • 84861783117 scopus 로고    scopus 로고
    • Cloning and expression analysis of novel Aux/IAA family genes in Gossypium hirsutum
    • Han X, Xu X, Fang DD, Zhang T, Guo W (2012) Cloning and expression analysis of novel Aux/IAA family genes in Gossypium hirsutum. Gene 503, 83-91.
    • (2012) Gene , vol.503 , pp. 83-91
    • Han, X.1    Xu, X.2    Fang, D.D.3    Zhang, T.4    Guo, W.5
  • 7
    • 0038381561 scopus 로고    scopus 로고
    • Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array
    • Ji SJ, Lu YC, Feng JX, Wei G, Li J, Shi YH, Fu Q, Liu D, Luo JC, Zhu YX (2003) Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array. Nucleic Acids Res. 31, 2534-2543.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2534-2543
    • Ji, S.J.1    Lu, Y.C.2    Feng, J.X.3    Wei, G.4    Li, J.5    Shi, Y.H.6    Fu, Q.7    Liu, D.8    Luo, J.C.9    Zhu, Y.X.10
  • 8
    • 0032516002 scopus 로고    scopus 로고
    • Polyploid formation created unique avenues for response to selection in Gossypium (cotton)
    • Jiang C, Wright RJ, El-Zik KM, Paterson AH (1998) Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proc. Natl. Acad. Sci. USA. 95, 4419-4424.
    • (1998) Proc. Natl. Acad. Sci. USA. , vol.95 , pp. 4419-4424
    • Jiang, C.1    Wright, R.J.2    El-Zik, K.M.3    Paterson, A.H.4
  • 9
    • 34447527510 scopus 로고    scopus 로고
    • A cotton ascorbate peroxidase is involved in hydrogen peroxide homeostasis during fibre cell development
    • Li HB, Qin YM, Pang Y, Song WQ, Mei WQ, Zhu YX (2007) A cotton ascorbate peroxidase is involved in hydrogen peroxide homeostasis during fibre cell development. New Phytol. 175, 462-471.
    • (2007) New Phytol. , vol.175 , pp. 462-471
    • Li, H.B.1    Qin, Y.M.2    Pang, Y.3    Song, W.Q.4    Mei, W.Q.5    Zhu, Y.X.6
  • 10
    • 84864310760 scopus 로고    scopus 로고
    • Identification and analyses of miRNA genes in allotetraploid Gossypium hirsutum fiber cells based on the sequenced diploid G. raimondii genome
    • Li Q, Jin X, Zhu YX (2012) Identification and analyses of miRNA genes in allotetraploid Gossypium hirsutum fiber cells based on the sequenced diploid G. raimondii genome. J. Genet. Genomics 39, 351-360.
    • (2012) J. Genet. Genomics , vol.39 , pp. 351-360
    • Li, Q.1    Jin, X.2    Zhu, Y.X.3
  • 11
    • 0033065337 scopus 로고    scopus 로고
    • Differential regulation of six novel MYB-domain genes defines two distinct expression patterns in allotetraploid cotton (Gossypium hirsutum L.)
    • Loguerico LL, Zhang JQ, Wilkins TA (1999) Differential regulation of six novel MYB-domain genes defines two distinct expression patterns in allotetraploid cotton (Gossypium hirsutum L.). Mol. Gen. Genet. 261, 660-671.
    • (1999) Mol. Gen. Genet. , vol.261 , pp. 660-671
    • Loguerico, L.L.1    Zhang, J.Q.2    Wilkins, T.A.3
  • 13
    • 76249125348 scopus 로고    scopus 로고
    • Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    • Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ (2009) Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biol. 10, R122.
    • (2009) Genome Biol. , vol.10
    • Pang, M.1    Woodward, A.W.2    Agarwal, V.3    Guan, X.4    Ha, M.5    Ramachandran, V.6    Chen, X.7    Triplett, B.A.8    Stelly, D.M.9    Chen, Z.J.10
  • 14
    • 77956554550 scopus 로고    scopus 로고
    • Comparative proteomics indicates that biosynthesis of pectic precursors is important for cotton fiber and Arabidopsis root hair elongation
    • Pang CY, Wang H, Pang Y, Xu C, Jiao Y, Qin YM, Western TL, Yu SX, Zhu YX (2010) Comparative proteomics indicates that biosynthesis of pectic precursors is important for cotton fiber and Arabidopsis root hair elongation. Mol. Cell Proteomics 9, 2019-2033.
    • (2010) Mol. Cell Proteomics , vol.9 , pp. 2019-2033
    • Pang, C.Y.1    Wang, H.2    Pang, Y.3    Xu, C.4    Jiao, Y.5    Qin, Y.M.6    Western, T.L.7    Yu, S.X.8    Zhu, Y.X.9
  • 16
    • 79959812762 scopus 로고    scopus 로고
    • The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana
    • Qi T, Song S, Ren Q, Wu D, Huang H, Chen Y, Fan M, Peng W, Ren C, Xie DX (2011) The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. Plant Cell 23, 1795-1814.
    • (2011) Plant Cell , vol.23 , pp. 1795-1814
    • Qi, T.1    Song, S.2    Ren, Q.3    Wu, D.4    Huang, H.5    Chen, Y.6    Fan, M.7    Peng, W.8    Ren, C.9    Xie, D.X.10
  • 17
    • 37849028984 scopus 로고    scopus 로고
    • Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis
    • Qin YM, Hu CY, Pang Y, Kastaniotis AJ, Hiltunen JK, Zhu YX (2007) Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. Plant Cell 19, 3692-3704.
    • (2007) Plant Cell , vol.19 , pp. 3692-3704
    • Qin, Y.M.1    Hu, C.Y.2    Pang, Y.3    Kastaniotis, A.J.4    Hiltunen, J.K.5    Zhu, Y.X.6
  • 19
    • 0037394417 scopus 로고    scopus 로고
    • Suppression of sucrose synthase gene expression represses cotton fiber cell initiation, elongation, and seed development
    • Ruan YL, Llewellyn DJ, Furbank RT (2003) Suppression of sucrose synthase gene expression represses cotton fiber cell initiation, elongation, and seed development. Plant Cell 15, 952-964.
    • (2003) Plant Cell , vol.15 , pp. 952-964
    • Ruan, Y.L.1    Llewellyn, D.J.2    Furbank, R.T.3
  • 20
    • 33747037492 scopus 로고    scopus 로고
    • Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton
    • Samuel Yang S, Cheung F, Lee JJ, Ha M, Wei NE, Sze SH, Stelly DM, Thaxton P, Triplett B, Town CD, Jeffrey Chen Z (2006) Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton. Plant J. 47, 761-775.
    • (2006) Plant J. , vol.47 , pp. 761-775
    • Samuel Yang, S.1    Cheung, F.2    Lee, J.J.3    Ha, M.4    Wei, N.E.5    Sze, S.H.6    Stelly, D.M.7    Thaxton, P.8    Triplett, B.9    Town, C.D.10    Jeffrey Chen, Z.11
  • 21
    • 33745462176 scopus 로고    scopus 로고
    • Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation
    • Shi YH, Zhu SW, Mao XZ, Feng JX, Qin YM, Zhang L, Cheng J, Wei LP, Wang ZY, Zhu YX (2006) Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation. Plant Cell 18, 651-664.
    • (2006) Plant Cell , vol.18 , pp. 651-664
    • Shi, Y.H.1    Zhu, S.W.2    Mao, X.Z.3    Feng, J.X.4    Qin, Y.M.5    Zhang, L.6    Cheng, J.7    Wei, L.P.8    Wang, Z.Y.9    Zhu, Y.X.10
  • 23
    • 79952033072 scopus 로고    scopus 로고
    • GhMYB25-like: A key factor in early cotton fibre development
    • Walford SA, Wu Y, Llewellyn DJ, Dennis ES (2011) GhMYB25-like: A key factor in early cotton fibre development. Plant J. 65, 785-797.
    • (2011) Plant J. , vol.65 , pp. 785-797
    • Walford, S.A.1    Wu, Y.2    Llewellyn, D.J.3    Dennis, E.S.4
  • 26
    • 84866405189 scopus 로고    scopus 로고
    • A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
    • Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY (2012b) A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules. Mol. Plant 5, 889-900.
    • (2012) Mol. Plant , vol.5 , pp. 889-900
    • Wang, Z.M.1    Xue, W.2    Dong, C.J.3    Jin, L.G.4    Bian, S.M.5    Wang, C.6    Wu, X.Y.7    Liu, J.Y.8
  • 27
    • 0001632947 scopus 로고
    • New World tetraploid cottons contain Old World cytoplasm
    • Wendel JF (1989) New World tetraploid cottons contain Old World cytoplasm. Proc. Natl. Acad. Sci. USA 86, 4132-4136.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 4132-4136
    • Wendel, J.F.1
  • 28
    • 0028917850 scopus 로고
    • Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
    • Wendel JF, Schnabel A, Seelanan T (1995) Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA 92, 280-284.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 280-284
    • Wendel, J.F.1    Schnabel, A.2    Seelanan, T.3
  • 30
    • 33846089285 scopus 로고    scopus 로고
    • Molecular biological and biochemical studies reveal new pathways important for cotton fiber development
    • Xu Y, Li HB, Zhu YX (2007) Molecular biological and biochemical studies reveal new pathways important for cotton fiber development. J. Integr. Plant Biol. 49, 69-74.
    • (2007) J. Integr. Plant Biol. , vol.49 , pp. 69-74
    • Xu, Y.1    Li, H.B.2    Zhu, Y.X.3
  • 31
    • 78650742970 scopus 로고    scopus 로고
    • Polyploidization altered gene functions in cotton (Gossypium spp.)
    • Xu Z, Yu JZ, Cho J, Yu J, Kohel RJ, Percy RG (2010) Polyploidization altered gene functions in cotton (Gossypium spp.). PLoS ONE 5, e14351.
    • (2010) PLoS ONE , vol.5
    • Xu, Z.1    Yu, J.Z.2    Cho, J.3    Yu, J.4    Kohel, R.J.5    Percy, R.G.6
  • 32
    • 84859122020 scopus 로고    scopus 로고
    • Overexpression of a potato sucrose synthase gene in cotton accelerates leaf expansion, reduces seed abortion, and enhances fiber production
    • Xu SM, Brill E, Llewellyn DJ, Furbank RT, Ruan YL (2012) Overexpression of a potato sucrose synthase gene in cotton accelerates leaf expansion, reduces seed abortion, and enhances fiber production. Mol. Plant 5, 430-441.
    • (2012) Mol. Plant , vol.5 , pp. 430-441
    • Xu, S.M.1    Brill, E.2    Llewellyn, D.J.3    Furbank, R.T.4    Ruan, Y.L.5
  • 35
    • 79955445809 scopus 로고    scopus 로고
    • Characterization of a novel annexin gene from cotton (Gossypium hirsutum cv CRI 35) and antioxidative role of its recombinant protein
    • Zhou L, Duan J, Wang XM, Zhang HM, Duan MX, Liu JY (2011) Characterization of a novel annexin gene from cotton (Gossypium hirsutum cv CRI 35) and antioxidative role of its recombinant protein. J. Integr. Plant Biol. 53, 347-357.
    • (2011) J. Integr. Plant Biol. , vol.53 , pp. 347-357
    • Zhou, L.1    Duan, J.2    Wang, X.M.3    Zhang, H.M.4    Duan, M.X.5    Liu, J.Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.